Silkworm Genome Informatics Database

Gene

KWMTBOMO02743

Pre Gene Modal

BGIBMGA002210

Annotation

PREDICTED:_uncharacterized_protein_LOC101737771_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr5(+):9977597-9979001 View in EpiBrowser

Transcription factor

THAP

Location in the cell

Nuclear Reliability : 4.244

CDS

ATGCCTGATACTCATCGTACTTGTGAAGTTTGTGGTATCAAAGAAAGACATCTTACTGAAAAACGGTTTTTCGCAAGGTTTCCTCTGGATGTCAATAGATGTAAACAATGGGTAAAGATGGTTGGCAAAGAAGATCTGGCTTATCTTCAAGTACATATGCTACATGATTTAAAACATGTTTGTGAAGCACATTTCTCAAGACGAGACTTTACAAAATCAAAGAAGCGCTTAAAAAAACGAGCTGTACCCAAACTGAACTTGACACTGCCACCATTGAGAGATGAAATTCTTCTTCAATTTTTGCAACTCAACTCGCAAGCGGATGTCACCCCACAAGGCCAGTTCGAGGTTCAGGCCGTTCCTAGTGCTTTGATGCCAGCATCCTCAAGTCAGCCTAGCGGTCTAGAGAAAACTGATGTCACCCCACAAGGCCAGTTTGAGGTTCAGGCTGTTCCTTGTACTTCAATGCCAACATCCTCAAGTCAGTCTAGCAGTCTAGAGAAAAGTAAGAATCGATTTCATGAAAGCAATTCTAAATTTTAG

Protein

MPDTHRTCEVCGIKERHLTEKRFFARFPLDVNRCKQWVKMVGKEDLAYLQVHMLHDLKHVCEAHFSRRDFTKSKKRLKKRAVPKLNLTLPPLRDEILLQFLQLNSQADVTPQGQFEVQAVPSALMPASSSQPSGLEKTDVTPQGQFEVQAVPCTSMPTSSSQSSSLEKSKNRFHESNSKF

Uniprot

H9IY77 A0A194Q062 A0A3L8D6Q9 X1XF69 A0A1B6MTU6 X1X0K7 + More

Pubmed

19121390 26354079 30249741

EMBL

BABH01038377 KQ459592 KPI96805.1 QOIP01000012 RLU15944.1 ABLF02035083 + More
GEBQ01000662 JAT39315.1 ABLF02007888 ABLF02010654 ABLF02010656 ABLF02025687 ABLF02031254 ABLF02066237

Proteomes

UP000005204 UP000053268 UP000279307 UP000007819

PRIDE

H9IY77

Pfam

PF05485 THAP + More
PF12017 Tnp_P_element

Interpro

IPR006612   THAP_Znf        + More
IPR021896   Transposase_37
IPR038441   THAP_Znf_sf

Gene 3D

3.30.40.180

ProteinModelPortal

H9IY77 A0A194Q062 A0A3L8D6Q9 X1XF69 A0A1B6MTU6 X1X0K7 + More

PDB

2D8R E-value=0.00954742, Score=87

KEGG

101737771 K23209 DNA transposase THAP9 [EC:2.7.7.-] | (RefSeq) uncharacterized LOC101737771

GO

GO:0003677 GO:0004803 GO:0006313 GO:0003676 GO:0005634 GO:0008270 GO:0046872 GO:0005667 GO:0005737 GO:0006631 GO:0006635 GO:0006281 GO:0048384

Length:

180

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00026

Exp number, first 60 AAs:

6e-05

Total prob of N-in:

0.24878

outside

1 - 180

Pi

223.771566

Theta

133.75699

Tajima's D

-1.677872

CLR

39.890701

CSRT

0.0367981600919954

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree