Gene

KWMTBOMO02742

Annotation

PREDICTED:_uncharacterized_protein_LOC106135477_[Amyelois_transitella]

Location

Bomo_Chr5(+):9971237-9975678      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.905

CDS

ATGCTGGACGAGAACAGTGGAAAATCAGTTTGTCGTATTCCAATTGATAGAGATGATCCTACTGGGTGCGGTGGACTCTGTACAATGGAATTAGAAGCTTGTCATTTGGTAGACAAGGAATTAGGTGTTCGTGTTTGTAGACTTTTAACACTAGCAACGTGTTCACCGGAAGAATGGCGTTGTCGTAATGGTTTATGTGTTCCTACAGAAAGCAGATGCAATGGTTCAGTAGAATGCTATGATCGATCAGACGAAGTACATTGCGACTGTGATCTTACAAAGCAGTTTCGCTGCGGGAATTTAATGTCTTGTTTTTCTAACATGAAGCTCTGCGATGGGATCGTCGACTGTTGGGATGGGTTCGACGAACGTAATTGCACTGAATGTCCGCAAAACCAATCACCGTGTAAAGATGGCCAATGTTTTTTATCATCAAGATTTTGTGATGGCTTCGTAGATTGCGAAGATCGCAGTGATGAACCAGATGGCTGTGGAGGATCGTGTAGGAAGCACGAACTGCGTTGCTTGAATCAACGTTGCGTACCTCTCACAGTAAAATGCGACGGTCAAGATAACTGCGGGGATGCTTCCGATGAATTAAATTGCTTTATGACCTAA

Protein

MLDENSGKSVCRIPIDRDDPTGCGGLCTMELEACHLVDKELGVRVCRLLTLATCSPEEWRCRNGLCVPTESRCNGSVECYDRSDEVHCDCDLTKQFRCGNLMSCFSNMKLCDGIVDCWDGFDERNCTECPQNQSPCKDGQCFLSSRFCDGFVDCEDRSDEPDGCGGSCRKHELRCLNQRCVPLTVKCDGQDNCGDASDELNCFMT

Similarity

Belongs to the ligand-gated ion channel (TC 1.A.9) family.

Uniprot

A0A2A4JFH0   A0A2H1WWB0   A0A212FIX6   A0A194PNG6   A0A194RGN8   A0A0L7KQG3   + More
A0A067R6L8   A0A2R7W8F0   A0A1V1FIX2   A0A1B6E7T3   A0A1B6IRG4   A0A1B6FME6   A0A0C9RJL0   A0A087ZWG5   E9J535   A0A0C9RMW1   A0A154PT49   A0A0M9A8B8   A0A0L7QVF9   A0A151X4U8   A0A131XLH1   A0A2R5L910   E2A7C9   A0A195D9E2   A0A195BPT4   A0A158NE10   A0A151IM54   A0A1E1X781   A0A195ESG9   A0A1E1XKP3   F4X1S2   A0A131YWU6   B7QKS7   K7JL11   T1IV70   A0A026W8D1   X1X7S3   J9K9N2   A0A2S2NZ55   A0A1Y1NCU5   A0A1V9XKA2   N6URR0   A0A1B6LW04   A0A2P8Y982   T1F504   A0A1B6F0K1   A0A1B6HQR8   A0A1B6K3W3   A0A0L8GZ95   A0A1W4WI19   A0A1B6CE74   A0A1S4ENM7   A0A1J1ISF7   A0A2J7PDY1   A0A0V1L9H1   A0A0V1L9P5   A0A0V0TQN3   A0A0V1P7W8   A0A0V0Y9I0   A0A0V0Y973   A0A0V1L9Q7   A0A0V1A039   A0A0V0S1Z7   A0A0V0TQK3   A0A0V1LAG3   A0A0V1H9H1   A0A0V0TQR2   A0A0V0YA48   A0A0V0S2A3   A0A0V0VJJ6   A0A0V1D5C2   A0A0V1D5B8   A0A1Y3ER74   A0A0V1D557   A0A0V0S2D0   A0A0V1D6H8   A0A0V1JSM3   A0A0V0Y9W0   A0A0V0TRW7   A0A0M3QYX2   A0A0P5C164   A0A2I4BNN1   A0A0P5CBY8   W5JU70   A0A182FBA2   A0A194Q149   A0A3B5QXR6   A7RXB7   A0A0V1L9K7   A0A023FEK7   A0A0V0S2W6   A0A0N1ID44   A0A1E1WWY3   A0A2C9LNM5   A0A2G8KY87   A0A3B5QWI6   A0A2P2HZD4   A0A3P7L8R5  

Pubmed

22118469    26354079    26227816    24845553    28410430    21282665    + More
28049606    20798317    21347285    28503490    29209593    21719571    26830274    20075255    24508170    28004739    28327890    23537049    29403074    23254933    20920257    23761445    23542700    17615350    15562597    29023486   

EMBL

NWSH01001776    PCG70180.1    ODYU01011505    SOQ57277.1    AGBW02008321    OWR53681.1    + More
KQ459597    KPI94862.1    KQ460207    KPJ16752.1    JTDY01007446    KOB65194.1    KK852854    KDR15023.1    KK854458    PTY16007.1    FX985388    BAX07401.1    GEDC01003297    JAS34001.1    GECU01018213    JAS89493.1    GECZ01028103    GECZ01018420    JAS41666.1    JAS51349.1    GBYB01008385    JAG78152.1    GL768123    EFZ12061.1    GBYB01008386    JAG78153.1    KQ435078    KZC14438.1    KQ435713    KOX79305.1    KQ414727    KOC62544.1    KQ982548    KYQ55324.1    GEFH01001184    JAP67397.1    GGLE01001833    MBY05959.1    GL437329    EFN70626.1    KQ981153    KYN09019.1    KQ976424    KYM88520.1    ADTU01013089    ADTU01013090    KQ977074    KYN05944.1    GFAC01004120    JAT95068.1    KQ981993    KYN30834.1    GFAA01003532    JAT99902.1    GL888551    EGI59579.1    GEDV01005582    JAP82975.1    ABJB010037934    DS961818    EEC19449.1    JH431575    KK107347    EZA52223.1    ABLF02024464    ABLF02010464    GGMR01009874    MBY22493.1    GEZM01010420    JAV94056.1    MNPL01009286    OQR73788.1    APGK01019082    KB740092    KB632429    ENN81422.1    ERL95472.1    GEBQ01012140    JAT27837.1    PYGN01000786    PSN40826.1    AMQM01004032    KB096411    ESO05065.1    GECZ01026042    GECZ01000340    JAS43727.1    JAS69429.1    GECU01030703    GECU01017883    JAS77003.1    JAS89823.1    GECU01001554    JAT06153.1    KQ419813    KOF82288.1    GEDC01025559    JAS11739.1    CVRI01000059    CRL03072.1    NEVH01026122    PNF14536.1    JYDW01000098    KRZ56207.1    KRZ56211.1    JYDJ01000176    KRX41248.1    JYDM01000035    KRZ92327.1    JYDU01000036    KRX97041.1    KRX97044.1    KRZ56209.1    JYDQ01000052    KRY18061.1    JYDL01000045    KRX20790.1    KRX41250.1    KRZ56210.1    JYDP01000102    KRZ07432.1    KRX41249.1    KRX97045.1    KRX20788.1    JYDN01000029    KRX63675.1    JYDI01000041    KRY56582.1    KRY56580.1    LVZM01003959    OUC47644.1    KRY56583.1    KRX20791.1    KRY56579.1    JYDV01000052    KRZ37912.1    KRX97043.1    KRX41251.1    CP012528    ALC48423.1    GDIP01177611    JAJ45791.1    GDIP01177610    JAJ45792.1    ADMH02000120    ETN67681.1    KQ459590    KPI97125.1    DS469549    EDO43937.1    KRZ56208.1    GBBK01005163    JAC19319.1    KRX20789.1    KQ459692    KPJ20448.1    GFAC01007892    JAT91296.1    MRZV01000307    PIK52967.1    IACF01001438    LAB67138.1    UYRU01057118    VDN13705.1   

Proteomes

UP000218220    UP000007151    UP000053268    UP000053240    UP000037510    UP000027135    + More
UP000005203    UP000076502    UP000053105    UP000053825    UP000075809    UP000000311    UP000078492    UP000078540    UP000005205    UP000078542    UP000078541    UP000007755    UP000001555    UP000002358    UP000053097    UP000007819    UP000192247    UP000019118    UP000030742    UP000245037    UP000015101    UP000053454    UP000192223    UP000079169    UP000183832    UP000235965    UP000054721    UP000055048    UP000054924    UP000054815    UP000054783    UP000054630    UP000055024    UP000054681    UP000054653    UP000243006    UP000054826    UP000092553    UP000192220    UP000000673    UP000069272    UP000002852    UP000001593    UP000076420    UP000230750   

Pfam

PF00057   Ldl_recept_a        + More
PF01390   SEA
PF07974   EGF_2
PF00008   EGF
PF00058   Ldl_recept_b
PF07679   I-set
PF00053   Laminin_EGF
PF00052   Laminin_B
PF02931   Neur_chan_LBD
PF02932   Neur_chan_memb
PF16472   DUF5050
PF12662   cEGF
PF07645   EGF_CA
PF00054   Laminin_G_1
PF02210   Laminin_G_2
PF00047   ig
PF13895   Ig_2
PF00092   VWA
PF00530   SRCR

Interpro

IPR036055   LDL_receptor-like_sf        + More
IPR002172   LDrepeatLR_classA_rpt       
IPR023415   LDLR_class-A_CS       
IPR036383   TSP1_rpt_sf       
IPR000082   SEA_dom       
IPR036364   SEA_dom_sf       
IPR040093   LRAD1       
IPR000884   TSP1_rpt       
IPR036179   Ig-like_dom_sf       
IPR007110   Ig-like_dom       
IPR013783   Ig-like_fold       
IPR000033   LDLR_classB_rpt       
IPR001881   EGF-like_Ca-bd_dom       
IPR000742   EGF-like_dom       
IPR011042   6-blade_b-propeller_TolB-like       
IPR018097   EGF_Ca-bd_CS       
IPR013032   EGF-like_CS       
IPR013111   EGF_extracell       
IPR000152   EGF-type_Asp/Asn_hydroxyl_site       
IPR009030   Growth_fac_rcpt_cys_sf       
IPR013098   Ig_I-set       
IPR000034   Laminin_IV       
IPR002049   Laminin_EGF       
IPR003599   Ig_sub       
IPR003598   Ig_sub2       
IPR036719   Neuro-gated_channel_TM_sf       
IPR032485   DUF5050       
IPR036734   Neur_chan_lig-bd_sf       
IPR006029   Neurotrans-gated_channel_TM       
IPR006202   Neur_chan_lig-bd       
IPR006201   Neur_channel       
IPR026823   cEGF       
IPR018000   Neurotransmitter_ion_chnl_CS       
IPR013106   Ig_V-set       
IPR001791   Laminin_G       
IPR013151   Immunoglobulin       
IPR013320   ConA-like_dom_sf       
IPR002035   VWF_A       
IPR036465   vWFA_dom_sf       
IPR017448   SRCR-like_dom       
IPR001190   SRCR       
IPR036772   SRCR-like_dom_sf       

SUPFAM

SSF57424   SSF57424        + More
SSF82895   SSF82895       
SSF82671   SSF82671       
SSF48726   SSF48726       
SSF57184   SSF57184       
SSF90112   SSF90112       
SSF63712   SSF63712       
SSF49899   SSF49899       
SSF53300   SSF53300       
SSF56487   SSF56487       

Gene 3D

4.10.400.10     3.30.70.960     2.20.100.10     2.60.40.10     2.120.10.30     2.70.170.10     3.40.50.410     3.10.250.10    

CDD

cd00112  LDLa

ProteinModelPortal

A0A2A4JFH0   A0A2H1WWB0   A0A212FIX6   A0A194PNG6   A0A194RGN8   A0A0L7KQG3   + More
A0A067R6L8   A0A2R7W8F0   A0A1V1FIX2   A0A1B6E7T3   A0A1B6IRG4   A0A1B6FME6   A0A0C9RJL0   A0A087ZWG5   E9J535   A0A0C9RMW1   A0A154PT49   A0A0M9A8B8   A0A0L7QVF9   A0A151X4U8   A0A131XLH1   A0A2R5L910   E2A7C9   A0A195D9E2   A0A195BPT4   A0A158NE10   A0A151IM54   A0A1E1X781   A0A195ESG9   A0A1E1XKP3   F4X1S2   A0A131YWU6   B7QKS7   K7JL11   T1IV70   A0A026W8D1   X1X7S3   J9K9N2   A0A2S2NZ55   A0A1Y1NCU5   A0A1V9XKA2   N6URR0   A0A1B6LW04   A0A2P8Y982   T1F504   A0A1B6F0K1   A0A1B6HQR8   A0A1B6K3W3   A0A0L8GZ95   A0A1W4WI19   A0A1B6CE74   A0A1S4ENM7   A0A1J1ISF7   A0A2J7PDY1   A0A0V1L9H1   A0A0V1L9P5   A0A0V0TQN3   A0A0V1P7W8   A0A0V0Y9I0   A0A0V0Y973   A0A0V1L9Q7   A0A0V1A039   A0A0V0S1Z7   A0A0V0TQK3   A0A0V1LAG3   A0A0V1H9H1   A0A0V0TQR2   A0A0V0YA48   A0A0V0S2A3   A0A0V0VJJ6   A0A0V1D5C2   A0A0V1D5B8   A0A1Y3ER74   A0A0V1D557   A0A0V0S2D0   A0A0V1D6H8   A0A0V1JSM3   A0A0V0Y9W0   A0A0V0TRW7   A0A0M3QYX2   A0A0P5C164   A0A2I4BNN1   A0A0P5CBY8   W5JU70   A0A182FBA2   A0A194Q149   A0A3B5QXR6   A7RXB7   A0A0V1L9K7   A0A023FEK7   A0A0V0S2W6   A0A0N1ID44   A0A1E1WWY3   A0A2C9LNM5   A0A2G8KY87   A0A3B5QWI6   A0A2P2HZD4   A0A3P7L8R5  

PDB

3M0C     E-value=5.63913e-16,     Score=202

KEGG

NA   

GO

GO:0016021   GO:0016787   GO:0060070   GO:0017147   GO:0042813   GO:0005509   GO:0005230   GO:0004888   GO:0016020   GO:0005044   GO:0005515   GO:0005634   GO:0008270   GO:0046872   GO:0005667   GO:0005737   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

PANTHER

PTHR22722:SF5  

Length:

205

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06704

outside

1  -  205

 

 

Pi

228.003365

Theta

175.529603

Tajima's D

1.22646

CLR

0

CSRT

0.72246387680616

Interpretation

Uncertain