Silkworm Genome Informatics Database

Gene

KWMTBOMO02735

Pre Gene Modal

BGIBMGA003476

Annotation

PREDICTED:_protein_grainyhead_isoform_X5_[Bombyx_mori]

Location

Bomo_Chr5(+):9770571-9773076 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.282

CDS

ATGTCCGCGTCGCCACAGCACGCGGGCGCTTGCGACGAGCGGGCACGCACGCCCAAAGCTTGCGGCTCGCCCGCGTCCGCCCCTCGCTCACCGGCCCCCGCACACGCTGTCCTAGCTACCATGACCCCGGTGCAACCCGCCCATGATTACTACCCTCATAAAGTAGAGATGGATTCCGATGATGGGTATCCTCCTGAGGCCCATTCGTATCGGCACTCGCCTCACGAACTAGCCGCCTATGCTACCGACAGTAAAGTGCCCGTTCAACCAGATGTTTACGAACAAGGCATGGAGTCAATAGATGAAAAAACTCCTATTGATCTGATTTATGAAGATGATAAGCAGACTGTAATATACACAACGACACCAGATCAAAAGCGCGTGGAGATGATCAGTGGGCAGCTTGAAGACGGTCAGCTGGTGAGCGGAGGAGGGCAACTGGTCGACGGTGGTGTCTCTGTTGTTGTGGGCGCTCCTGGACAACCACCAACGGTTCTGGTCTTAGCTGATCACATGGTCGATGAACTTGGTCAAGTTATCACCATTCCCAGGTAA

Protein

MSASPQHAGACDERARTPKACGSPASAPRSPAPAHAVLATMTPVQPAHDYYPHKVEMDSDDGYPPEAHSYRHSPHELAAYATDSKVPVQPDVYEQGMESIDEKTPIDLIYEDDKQTVIYTTTPDQKRVEMISGQLEDGQLVSGGGQLVDGGVSVVVGAPGQPPTVLVLADHMVDELGQVITIPR

Uniprot

H9J1T9 A0A0L7LW26 A0A2H1WWL9 A0A2A4JZC8 A0A2A4JZ32 A0A2A4JZ01 + More
A0A194PPF0 A0A194RHE1 A0A212FIZ2 A0A139WPR4 A0A139WPH2 A0A1Y1KSK1 A0A1Y1KQ91 A0A1Y1KKJ5 A0A1Y1KQY2

Pubmed

19121390 26227816 26354079 22118469 18362917 19820115 + More
28004739

EMBL

BABH01007991 JTDY01000022 KOB79376.1 ODYU01011613 SOQ57463.1 NWSH01000357 + More
PCG77038.1 PCG77036.1 PCG77039.1 KQ459597 KPI94853.1 KQ460207 KPJ16740.1 AGBW02008321 OWR53690.1 KQ971307 KYB29831.1 KYB29832.1 GEZM01081147 JAV61847.1 GEZM01081149 JAV61845.1 GEZM01081150 JAV61844.1 GEZM01081148 JAV61846.1

Proteomes

UP000005204 UP000037510 UP000218220 UP000053268 UP000053240 UP000007151 + More
UP000007266

PRIDE

H9J1T9

Pfam

PF04516 CP2

Interpro

IPR007604 CP2 + More
IPR040167 TF_CP2-like

ProteinModelPortal

H9J1T9 A0A0L7LW26 A0A2H1WWL9 A0A2A4JZC8 A0A2A4JZ32 A0A2A4JZ01 + More
A0A194PPF0 A0A194RHE1 A0A212FIZ2 A0A139WPR4 A0A139WPH2 A0A1Y1KSK1 A0A1Y1KQ91 A0A1Y1KKJ5 A0A1Y1KQY2

KEGG

101740332 K09275 transcription factor CP2 and related proteins | (RefSeq) protein grainyhead

GO

GO:0006357 GO:0003700 GO:0043565 GO:0005634

PANTHER

PTHR11037

Length:

184

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00573

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.07272

outside

1 - 184

Pi

8.832249

Theta

11.028663

Tajima's D

-0.451661

CLR

0.175623

CSRT

0.260186990650467

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics