Gene

KWMTBOMO02734  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003475

Annotation

PREDICTED:_elongation_factor_1_delta_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr5(+):9762981-9767417      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.485 Nuclear   Reliability : 1.278

CDS

ATGGATAGTGTAGCAACTTTGGCGGGTGTTCCTAATACAGAGCTCAGTACTAAAGTCATCAGCTTAGAAAACGAAAACAAGGATTTGAAAAAGGCTATAGATGATTTACGTAATTTAGTCATCAGCCTGCAAGTCCGTGTTGAAACCTTGGAATCATCCAGCAGTATCACCTCTGATTGTATTCAATCAGAAAAACCTGCAGCAGCTTCTACTGATAAGGATGACGAAGATGATGATGTTGATTTGTTTGGTTCAGATGATGAAGAGGAGAGTGCTGAAGCAGCTAAGATAAAGGAAGAGCGTCTTGCTGCATATAATGCAAAGAAAGCTAAAAAGCCAGTGCTAATTGCAAAGTCGAATATTATTCTGGATGTAAAGCCATGGGATGATGAGACTGATATGGCAGCCTTGGAACAAGCTGTAAGGTCAATCAGCACTGATGGCCTCTTGTGGGGTGCCGCTAAACTAGTGCCTTTGGCTTATGGTATCCATAAGCTGCAAATTTCCTGTGTTGTTGAAGATGATAAGGTTTCTATTGATTGGCTTACTGAGGAAATCGAGAAAAATGAAGACTATGTACAAAGTGTCGATATTGCTGCGTTCAACAAAGTCTAG

Protein

MDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDCIQSEKPAAASTDKDDEDDDVDLFGSDDEEESAEAAKIKEERLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEEIEKNEDYVQSVDIAAFNKV

Similarity

Belongs to the EF-1-beta/EF-1-delta family.

Uniprot

Q9BPS1   A0A212FIY9   A0A0L7LV85   I4DIY3   I4DMJ6   A0A2H1WYK3   + More
A0A2A4JYE9   A0A2A4JZU8   A0A1E1WTF4   A0A1E1W7W5   A0A1E1VZX5   S4NT30   A0A194RH23   A0A1B0CGT9   A0A1L8DH59   A0A1L8DGI4   A0A182Q2L1   A0A182PD75   E1ZUU8   A0A182Y5E1   A0A182JD47   A0A182MJK1   A0A182RV62   A0A348G620   A0A0K8TQ13   A0A1B6L2A8   Q1W2A4   A0A1B6MBD5   A0A1B6KQ50   A0A1B6MTR1   A0A151JY62   A0A158NB19   A0A182ND03   A0A151I7W1   A0A195DYN9   A0A0P8XGN7   B3MPN3   A0A2S2QDE6   U5EXR8   T1JB50   A0A1B6CX42   A0A0P6ES73   A0A0P5UXS2   A0A0P5A6D7   A0A0N8E5Y1   A0A0P5G0H4   A0A0P5L1D4   A0A0N8D0Z3   A0A0P5YHD9   A0A0P5I1K7   A0A0P5ERM8   A0A182SIU4  

Pubmed

19121390    22118469    26227816    22651552    26354079    23622113    + More
20798317    25244985    26369729    21347285    17994087   

EMBL

BABH01007991    AB046366    BAB21109.1    AGBW02008321    OWR53691.1    JTDY01000022    + More
KOB79372.1    AK401251    KQ459597    BAM17873.1    KPI94852.1    AK402514    BAM19136.1    ODYU01011613    SOQ57464.1    NWSH01000357    PCG77045.1    PCG77043.1    GDQN01000800    JAT90254.1    GDQN01008017    JAT83037.1    GDQN01010843    JAT80211.1    GAIX01012336    JAA80224.1    KQ460207    KPJ16739.1    AJWK01011585    AJWK01011586    AJWK01011587    GFDF01008359    JAV05725.1    GFDF01008640    JAV05444.1    AXCN02001566    GL434297    EFN75040.1    AXCM01001325    FX985559    BBF97893.1    GDAI01001372    JAI16231.1    GEBQ01022115    JAT17862.1    DQ445523    GEBQ01032049    ABD98761.1    JAT07928.1    GEBQ01006749    JAT33228.1    GEBQ01026633    JAT13344.1    GEBQ01000708    JAT39269.1    KQ981533    KYN40114.1    ADTU01010746    KQ978396    KYM94224.1    KQ980050    KYN18015.1    CH902620    KPU73879.1    EDV32281.1    GGMS01006546    MBY75749.1    GANO01000805    JAB59066.1    JH432008    GEDC01019307    JAS17991.1    GDIQ01058621    JAN36116.1    GDIP01110053    GDIP01110052    JAL93661.1    GDIP01207848    JAJ15554.1    GDIQ01058620    JAN36117.1    GDIQ01249261    JAK02464.1    GDIQ01177632    GDIQ01177574    JAK74151.1    GDIP01079503    JAM24212.1    GDIP01071570    JAM32145.1    GDIQ01221920    JAK29805.1    GDIQ01265994    JAJ85730.1   

Proteomes

UP000005204    UP000007151    UP000037510    UP000053268    UP000218220    UP000053240    + More
UP000092461    UP000075886    UP000075885    UP000000311    UP000076408    UP000075880    UP000075883    UP000075900    UP000078541    UP000005205    UP000075884    UP000078542    UP000078492    UP000007801    UP000075901   

PRIDE

Q9BPS1   

Pfam

PF00736   EF1_GNE        + More
PF10587   EF-1_beta_acid

Interpro

IPR014717   Transl_elong_EF1B/ribosomal_S6        + More
IPR001326   Transl_elong_EF1B_B/D_CS       
IPR014038   EF1B_bsu/dsu_GNE       
IPR036219   eEF-1beta-like_sf       
IPR018940   EF-1_beta_acid_region_euk       

SUPFAM

SSF54984   SSF54984       

Gene 3D

3.30.70.60    

CDD

cd00292  EF1B

ProteinModelPortal

Q9BPS1   A0A212FIY9   A0A0L7LV85   I4DIY3   I4DMJ6   A0A2H1WYK3   + More
A0A2A4JYE9   A0A2A4JZU8   A0A1E1WTF4   A0A1E1W7W5   A0A1E1VZX5   S4NT30   A0A194RH23   A0A1B0CGT9   A0A1L8DH59   A0A1L8DGI4   A0A182Q2L1   A0A182PD75   E1ZUU8   A0A182Y5E1   A0A182JD47   A0A182MJK1   A0A182RV62   A0A348G620   A0A0K8TQ13   A0A1B6L2A8   Q1W2A4   A0A1B6MBD5   A0A1B6KQ50   A0A1B6MTR1   A0A151JY62   A0A158NB19   A0A182ND03   A0A151I7W1   A0A195DYN9   A0A0P8XGN7   B3MPN3   A0A2S2QDE6   U5EXR8   T1JB50   A0A1B6CX42   A0A0P6ES73   A0A0P5UXS2   A0A0P5A6D7   A0A0N8E5Y1   A0A0P5G0H4   A0A0P5L1D4   A0A0N8D0Z3   A0A0P5YHD9   A0A0P5I1K7   A0A0P5ERM8   A0A182SIU4  

PDB

2N51     E-value=1.36779e-33,     Score=354

KEGG

692393    K15410 elongation factor 1-delta | (RefSeq) Ef-1d; elongation factor 1 delta

GO

GO:0003746   GO:0005853   GO:0006414   GO:0005634   GO:0005667   GO:0005737   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

Length:

204

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00808

Exp number, first 60 AAs:

0.00073

Total prob of N-in:

0.05285

outside

1  -  204

 

 

Pi

198.018744

Theta

154.95465

Tajima's D

0.302511

CLR

0.227714

CSRT

0.460076996150192

Interpretation

Uncertain