SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02729
Pre Gene Modal
BGIBMGA003724
Annotation
Acetylcholinesterase_[Papilio_xuthus]
Location
Bomo_Chr5(-):9681977-9700290      View in EpiBrowser
Full name
Poly [ADP-ribose] polymerase      
Location in the cell
PlasmaMembrane   Reliability : 3.087
 

Sequence

CDS
ATGGAGAGAGAGCACGAGGTGTTATCAGAAACGGGTACCAATTGTAATATAGCCTCGGTATCAGAGACAATGTCGGATATCAATCAAACCAAATTGGACACTTTGGAAAAAAAGGCTGTTCATCTGAGACTTGTTTTGGAAAAAGACTTCAAAGCCGCTGATTTGAAATGGAGTTTATTCGTAGCAGCCGCTTTTAGTTTTCGTTATGAAAGTTGTCTACGACCTTTTCCTCCGGCTTTTATGAAAAGTGGCATCAAAGACATGGACGAATTGCTTAGTGTAATCACTGACGTGCCAGCTTTGGATTTGGTGCTACAACAATTGGATAATTTGGAAGCGTTGCCAAATATCAGTGATATCATCGACTTATTGTTTTACGTCCTTGTGCGACTTAAAGAACCAACATTAAAAACAGTACCAACGGATGTGCACGAACAAATCTTAGCGATGGCAAATACTATGACGACACCATCGAAGCCGCAACACATTTTTCAAGTTATCAGTTCTAACAAATCTACTGTCGAACTAAAGTGGAAAGAACTGTCCAAAAATCATAATGTATTTTATGCGTATCACGGAAATCGTTTGGAGAACTTTTATACGATTCTCAATTTTGGCTTACAACAGCATTTGAACAAGAATACTTCGCTGGGTAATGGAGTATACCTGTCGCCAGAACTAAGTGCGACAATACCTCACAGTCATGGAGGCTTCGGATGGGGGGCGAGTTGTATCGGAGGTCACTTATCTTGTGTAGCCTTGTGCGAAGTGGTTGATGCACCCGAAGGGATCAATTACCAAAAGCCAGTCTCCAATGAAGGTGATGGACTTTATAAAGATGGAAAGACTGATCATATGCGAGTAAATGGCGAAACACAAGTTACCCAATATATTGTAACTAATTGTGACTTAGTGAGAATCCGTTATCTGTTGGTTTACGCGAAACAACCCGCATCTTTGAGATTTCACGCAAGGAATTCGAATAGAAATGGTGGTTTTCGTCATTGGCTAGCACGTCACAAATTGCTATCGATTCTTCTCGGTTACGGGTTGTTATTGGCTACCATTGGCTTTGCCAACAATCAACCAATACAATATTACTACAAAATTTTGTTTAAAAAAATTGACATGGCTCTAGCTAATCCGGTGGCAAATTTACGTCAAGGTCGTATCATCGGGATTAAAGTTTTTACTGAAAGCACTCTTACACCTATCGAAGTTTATTATGGTATACCATACGCTATTCCGCCTATTGGACGACATAGATTTTTGGCACCGGTAAGACACACTGGATGGGAACGTACATTTTTTGCCCGTCGTATACCCCCACATTGCCCTTGTGAAGAAGATCCCGATAATGACAATGCAAGTGAAGATTGTCTATTTTTAAACGTGTGGACTCCGCGGCCCACCGAAGGTGTCGCGTTACCAGTCGTTGTTTTGCTGTACAGTGAATCATGGACTCGCGGTGGAACAACGTTGCCTTGCCAAGAATTAGCTGGCGAAGGTGTCGTAGTGGTCACAGTGTCCTATCGTTTACATCTTTTAGCATTTTTCACACTGAAATCTAAATCGGCACGTGGCAATCTTGCTCTACTGGATCAATACCTCGCTCTTGTGTGGATACGTGATAACATAGCGGCGTTTGGGGGTAATCCCGCAACGATTACATTATTAGGACATTCTGCGGGTGCCGACAGCATATTGTACCACTTGGTGTCACCTCGATCAACAGGTTTATTTCATAGAGCGATTTTAATGTCTCCTCAGTATATTTGGCAAACAATCGATGAGAAATCGACCAACAATCAGACCTATAGAATTTCTCAGGAGATAGTAAGGGTACTCGGATGTAATGACAACGGGGAAAGTGATATTATTAACTGCCTGCAAACTCGCCCGCTCTCTGATATAATAGCTCTCTATCCGAACAAAACCTGGAGTAAATATTTGCACCCGATCCCGGACGACTTCCTGCCAGATTCCGAACAGTTCTTGCCCGTTTCATTAGTAACAGCATTATCGCAGGCAAAACGAAAACAGAAGCCGATTGATCTACTGTTGGGTACAAACGACATTGATGCCCTTAACTACAATGATGAAACATACGCAGAGTTAAACAATCTTAGTCCTCTACACATTTCTAAGATTGCAGATTCTCGAATCATACCTAAATTACTTCAAATGTTGTCGTTGGGAGCAGCTGAAGATTTTCCCGTGGTAATTTTTTATTACTTCAAACATGAAACTAATTTTGGGGCAACGCACGGAACGAATCTAGTATCATTACTAGGAAACCCTATGATAATGCAAATAGCCCGTCGACTCGCAACAGCAGATGAAAAACAGATTTCATCTCTATTTAGAAAAATAATTATCAATTTCATCAAACACGGATACCCCGTCGAAGACGGTAAATGGCGACAATATATGGTGGGCGATGCTCATATTTATATTATATCTAATGGAAAGTACTACAAAAGCTATAACAACGATGTCGAATTTTGGTTGAAATATCTGCCGGAATTATCAAACTTAATTTCTAAACCTGATCAAACAGAACAGCTCGCCTTAGAACAAGAAGAAAGCCGGTTACGGGGTGGTGTGCTTGCAATGTGCGGAGTGGCTGTGTTTCTACTTCTTCTACTAAGTGTAAGCGCTATACTTTTGCGCAGGCAACATTCCCGTCGTTATTCAGTTTCCGATGAAACACTTAATTCTTAG
Protein
MEREHEVLSETGTNCNIASVSETMSDINQTKLDTLEKKAVHLRLVLEKDFKAADLKWSLFVAAAFSFRYESCLRPFPPAFMKSGIKDMDELLSVITDVPALDLVLQQLDNLEALPNISDIIDLLFYVLVRLKEPTLKTVPTDVHEQILAMANTMTTPSKPQHIFQVISSNKSTVELKWKELSKNHNVFYAYHGNRLENFYTILNFGLQQHLNKNTSLGNGVYLSPELSATIPHSHGGFGWGASCIGGHLSCVALCEVVDAPEGINYQKPVSNEGDGLYKDGKTDHMRVNGETQVTQYIVTNCDLVRIRYLLVYAKQPASLRFHARNSNRNGGFRHWLARHKLLSILLGYGLLLATIGFANNQPIQYYYKILFKKIDMALANPVANLRQGRIIGIKVFTESTLTPIEVYYGIPYAIPPIGRHRFLAPVRHTGWERTFFARRIPPHCPCEEDPDNDNASEDCLFLNVWTPRPTEGVALPVVVLLYSESWTRGGTTLPCQELAGEGVVVVTVSYRLHLLAFFTLKSKSARGNLALLDQYLALVWIRDNIAAFGGNPATITLLGHSAGADSILYHLVSPRSTGLFHRAILMSPQYIWQTIDEKSTNNQTYRISQEIVRVLGCNDNGESDIINCLQTRPLSDIIALYPNKTWSKYLHPIPDDFLPDSEQFLPVSLVTALSQAKRKQKPIDLLLGTNDIDALNYNDETYAELNNLSPLHISKIADSRIIPKLLQMLSLGAAEDFPVVIFYYFKHETNFGATHGTNLVSLLGNPMIMQIARRLATADEKQISSLFRKIIINFIKHGYPVEDGKWRQYMVGDAHIYIISNGKYYKSYNNDVEFWLKYLPELSNLISKPDQTEQLALEQEESRLRGGVLAMCGVAVFLLLLLSVSAILLRRQHSRRYSVSDETLNS

Summary

Similarity
Belongs to the type-B carboxylesterase/lipase family.
Uniprot
H9J2I7   A0A194PNF1  
EC Number
2.4.2.-
Pubmed
19121390    26354079   
EMBL
BABH01007997    KQ459597    KPI94847.1   
Proteomes
UP000005204    UP000053268   
PRIDE
H9J2I7   
Pfam
PF18084   ARTD15_N        + More
PF00135   COesterase
PF00644   PARP
Interpro
IPR019826   Carboxylesterase_B_AS        + More
IPR002018   CarbesteraseB       
IPR029058   AB_hydrolase       
IPR041400   PARP16_N       
IPR012317   Poly(ADP-ribose)pol_cat_dom       
IPR019819   Carboxylesterase_B_CS       
SUPFAM
SSF53474   SSF53474       
Gene 3D
3.40.50.1820    
ProteinModelPortal
H9J2I7   A0A194PNF1  
PDB
1F8U     E-value=1.94641e-43,     Score=446

Ontologies

KEGG
101735431    K00774 poly [ADP-ribose] polymerase 16 [EC:2.4.2.30] | (RefSeq) mono [ADP-ribose] polymerase PARP16
GO
GO:0003950   GO:0016787   GO:0016021   GO:0003676   GO:0006412   GO:0004823   GO:0006429   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

Topology

Length:
907
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
31.75578
Exp number, first 60 AAs:
0.00477
Total prob of N-in:
0.20363
outside
1  -  867
TMhelix
868  -  890
inside
891  -  907
 
 

Population Genetic Test Statistics

Pi
223.834844
Theta
165.244988
Tajima's D
0.555911
CLR
0.248004
CSRT
0.526323683815809
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号