Gene

KWMTBOMO02728

Annotation

14_kDa_subunit_splicing_factor_3b_[Bombyx_mori]

Location

Bomo_Chr5(-):9667865-9673000      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.123 Mitochondrial   Reliability : 1.808

CDS

ATGGCATTAGCACTTCAAAGAAGAGCAAATGTACGATTACCTCCAGAAGTCAACAGAATCCTATACATCAGGAACTTGCCCTACAAAATATCCGCTGAAGAAATGTATGATATCTTCGGCAAATATGGCGCAATAAGACAAATAAGAGTAGGGAACACTCCAGAAACAAGAGGCACAGCATTTGTTGTTTATGAAGATATATTTGATGCAAAAAATGCCTGTGACCATCTATCTGGTTTTAATGTTTGTAACAGGTATCTGGTTGTACTCTACTATAGATCCAACAAAGCCTTTAAAGGTATTGATATTGATAAGAAACAAGAAGAAATTGATACATTGAAAAAGAAATATGGAATATCTAGTGAAGATCTGCGTAAATGA

Protein

MALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYRSNKAFKGIDIDKKQEEIDTLKKKYGISSEDLRK

Uniprot

Q1HPU5   A0A194RGL7   I4DLE4   A0A212FIX2   A0A2H1W630   S4PMJ4   + More
A0A2A4JZU1   A0A0L7LVM4   A0A0T6B6X1   Q0IFB6   A0A023EDK8   B0WN88   A0A1Q3FWY5   A0A2J7Q103   E7D152   A0A182J040   D6X338   R4V0P5   A0A067R5N7   A0A0K8TNV5   A0A084W352   J3JWL6   A0A182N7B3   A0A182XUY1   A0A1L8DHR9   A0A182QMC2   W5JU41   A0A182RPE6   A0A182MH87   A0A182PDZ9   A0A182USP6   A0A182JZ15   A0A182UIV1   A0A182XIS3   Q7QCS0   A0A182HTJ3   A0A2P8YY14   A0A146LIN2   A0A182VRU7   A0A2M4C3J8   A0A2M4AXC3   A0A182F722   A0A224XPD7   A0A0V0G8T4   A0A023FB63   A0A1Y1NMD6   A0A1S3KDR6   A0A1W4X1B3   U5EKU7   A0A154PP81   A0A0L7QRV9   A0A087ZVI1   A0A310SBC4   A0A0P4VKV9   R4G4B5   A0A1B0CPZ4   A0A023FWA0   E9J939   A0A151J8K4   F4X7X5   A0A195BU37   A0A158NUF0   E2A1Z6   A0A151WFZ4   A0A195FXI1   A0A232F7M9   K7IVC3   E9FSM0   A0A1B6JXK2   A0A1B6H2A2   A0A1B6LZ55   A0A2P6L9Q2   A0A1E1XTZ8   A0A023FG96   A0A232F454   K7J8Q2   A0A0J7L998   A0A2S2PKK0   A0A1B6LQI2   A0A224YI31   A0A131YG02   A0A131XKW7   A0A2M3ZK14   A0A2H8TCU9   A0A2S2NJA4   A0A2S2QK37   C4WTB0   V3Z5H2   A0A293LXC8   A0A3L8DMX6   A0A1Y3BHX0   A0A0K8RBH7   A0A1S3D7L5   A0A1J1IKT2   T1J6S5   G3MQT9   A0A1E1X119   A0A023GH50   A0A026WQH6   A0A2T7PG46  

Pubmed

26354079    22651552    22118469    23622113    26227816    17510324    + More
24945155    26483478    18362917    19820115    24845553    26369729    24438588    22516182    23537049    25244985    20920257    23761445    12364791    14747013    17210077    29403074    26823975    25474469    28004739    27129103    21282665    21719571    21347285    20798317    28648823    20075255    21292972    29209593    28797301    26830274    28049606    23254933    30249741    22216098    28503490    24508170   

EMBL

DQ443307    DQ497199    ABF51396.1    ABF55964.1    KQ460207    KPJ16732.1    + More
AK402112    KQ459597    BAM18734.1    KPI94846.1    AGBW02008321    OWR53697.1    ODYU01006578    SOQ48540.1    GAIX01000146    JAA92414.1    NWSH01000357    PCG77033.1    JTDY01000012    KOB79434.1    LJIG01009515    KRT82926.1    CH477364    EAT42577.1    JXUM01005815    GAPW01006035    KQ560202    JAC07563.1    KXJ83870.1    DS232008    EDS31528.1    GFDL01003059    JAV31986.1    NEVH01019960    PNF22255.1    HQ005800    ADV40096.1    KQ971372    EFA10322.1    KC632383    AGM32197.1    KK852945    KDR13454.1    GDAI01001536    JAI16067.1    ATLV01019816    KE525279    KFB44646.1    APGK01051594    BT127634    KB741194    AEE62596.1    ENN72988.1    GFDF01008088    JAV05996.1    AXCN02000146    ADMH02000081    ETN67867.1    AXCM01004364    AXCM01004826    AAAB01008859    EAA07781.4    APCN01000536    PYGN01000292    PSN49137.1    GDHC01011922    JAQ06707.1    GGFJ01010704    MBW59845.1    GGFK01012074    MBW45395.1    GFTR01002079    JAW14347.1    GECL01001686    JAP04438.1    GBBI01000549    JAC18163.1    GEZM01001975    JAV97426.1    GANO01001672    JAB58199.1    KQ435007    KZC13679.1    KQ414768    KOC61358.1    KQ765174    OAD54106.1    GDKW01001602    JAI54993.1    ACPB03009793    GAHY01000911    JAA76599.1    AJWK01022883    AJWK01022884    GBBL01002322    JAC24998.1    GL769168    EFZ10694.1    KQ979507    KYN21187.1    GL888900    EGI57461.1    KQ976417    KYM89941.1    ADTU01026411    GL435878    EFN72538.1    KQ983203    KYQ46754.1    KQ981193    KYN45143.1    NNAY01000789    OXU26500.1    AAZX01013039    GL732524    EFX89225.1    GECU01003797    JAT03910.1    GECZ01000960    JAS68809.1    GEBQ01019012    GEBQ01011008    JAT20965.1    JAT28969.1    MWRG01000761    PRD35307.1    GFAA01000660    JAU02775.1    GBBK01004317    JAC20165.1    NNAY01001022    OXU25455.1    LBMM01000225    KMR04054.1    GGMR01017326    MBY29945.1    GEBQ01013991    JAT25986.1    GFPF01005469    MAA16615.1    GEDV01010690    JAP77867.1    GEFH01000437    JAP68144.1    GGFM01008166    MBW28917.1    GFXV01000114    MBW11919.1    GGMR01004626    MBY17245.1    GGMS01008891    MBY78094.1    ABLF02013637    ABLF02013638    AK340542    BAH71130.1    KB203188    ESO85998.1    GFWV01008415    MAA33144.1    QOIP01000006    RLU21780.1    MUJZ01022136    OTF79624.1    GADI01005291    JAA68517.1    CVRI01000048    CRK99065.1    JH431887    JO844240    AEO35857.1    GFAC01006452    JAT92736.1    GBBM01003095    GBBM01003094    JAC32323.1    KK107128    EZA58275.1    PZQS01000004    PVD32393.1   

Proteomes

UP000053240    UP000053268    UP000007151    UP000218220    UP000037510    UP000008820    + More
UP000069940    UP000249989    UP000002320    UP000235965    UP000075880    UP000007266    UP000027135    UP000030765    UP000019118    UP000075884    UP000076408    UP000075886    UP000000673    UP000075900    UP000075883    UP000075885    UP000075903    UP000075881    UP000075902    UP000076407    UP000007062    UP000075840    UP000245037    UP000075920    UP000069272    UP000085678    UP000192223    UP000076502    UP000053825    UP000005203    UP000015103    UP000092461    UP000078492    UP000007755    UP000078540    UP000005205    UP000000311    UP000075809    UP000078541    UP000215335    UP000002358    UP000000305    UP000036403    UP000007819    UP000030746    UP000279307    UP000079169    UP000183832    UP000053097    UP000245119   

PRIDE

Q1HPU5   

Pfam

PF00076   RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR034150   SF3B6_RRM       
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

CDD

cd12241  RRM_SF3B14

ProteinModelPortal

Q1HPU5   A0A194RGL7   I4DLE4   A0A212FIX2   A0A2H1W630   S4PMJ4   + More
A0A2A4JZU1   A0A0L7LVM4   A0A0T6B6X1   Q0IFB6   A0A023EDK8   B0WN88   A0A1Q3FWY5   A0A2J7Q103   E7D152   A0A182J040   D6X338   R4V0P5   A0A067R5N7   A0A0K8TNV5   A0A084W352   J3JWL6   A0A182N7B3   A0A182XUY1   A0A1L8DHR9   A0A182QMC2   W5JU41   A0A182RPE6   A0A182MH87   A0A182PDZ9   A0A182USP6   A0A182JZ15   A0A182UIV1   A0A182XIS3   Q7QCS0   A0A182HTJ3   A0A2P8YY14   A0A146LIN2   A0A182VRU7   A0A2M4C3J8   A0A2M4AXC3   A0A182F722   A0A224XPD7   A0A0V0G8T4   A0A023FB63   A0A1Y1NMD6   A0A1S3KDR6   A0A1W4X1B3   U5EKU7   A0A154PP81   A0A0L7QRV9   A0A087ZVI1   A0A310SBC4   A0A0P4VKV9   R4G4B5   A0A1B0CPZ4   A0A023FWA0   E9J939   A0A151J8K4   F4X7X5   A0A195BU37   A0A158NUF0   E2A1Z6   A0A151WFZ4   A0A195FXI1   A0A232F7M9   K7IVC3   E9FSM0   A0A1B6JXK2   A0A1B6H2A2   A0A1B6LZ55   A0A2P6L9Q2   A0A1E1XTZ8   A0A023FG96   A0A232F454   K7J8Q2   A0A0J7L998   A0A2S2PKK0   A0A1B6LQI2   A0A224YI31   A0A131YG02   A0A131XKW7   A0A2M3ZK14   A0A2H8TCU9   A0A2S2NJA4   A0A2S2QK37   C4WTB0   V3Z5H2   A0A293LXC8   A0A3L8DMX6   A0A1Y3BHX0   A0A0K8RBH7   A0A1S3D7L5   A0A1J1IKT2   T1J6S5   G3MQT9   A0A1E1X119   A0A023GH50   A0A026WQH6   A0A2T7PG46  

PDB

6FF7     E-value=7.24096e-52,     Score=508

KEGG

732980    K12833 pre-mRNA branch site protein p14 | (RefSeq) 14 kDa subunit splicing factor 3b

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0071013   GO:0005689   GO:0005686   GO:0000398   GO:0000166   GO:0003676   GO:0006412   GO:0004823   GO:0006429   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

Length:

126

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0051

Exp number, first 60 AAs:

0.00059

Total prob of N-in:

0.35572

outside

1  -  126

 

 

Pi

130.316811

Theta

5.633053

Tajima's D

1.125876

CLR

0.260278

CSRT

0.713414329283536

Interpretation

Uncertain