Gene

KWMTBOMO02724  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003726

Annotation

ribosomal_protein_L13_[Bombyx_mori]

Location

Bomo_Chr5(-):9617383-9621060      View in EpiBrowser

Full name

60S ribosomal protein L13      

Alternative Name

BBC1 protein homolog

Location in the cell

Mitochondrial   Reliability : 2.635

CDS

ATGGGCAAGGGGAATAATATGATACCTAATGGACATTTCCACAAGGATTGGCAAAGATTTGTTAAAACTTGGTTTAACCAGCCAGCTCGACGATACCGCAGAAAGCAAAATAGAATAAAGAAAGCTAAGGCCGTAGCTCCACGTCCTGCAGCTGGGCCGTTACGTCCTATAGTGCGATGCCCAACTGTTCGGTACCATACTAAAGTACGCGCCGGTAGAGGATTCACTCTTCGTGAAATTAGGGCCGCAGGATTGAACCCAGTATTTGCCCGAACGATTGGAATTGCTGTAGATCCCCGTAGACGCAACAAGTCTGTTGAATCATTGCAAATCAATGTTCAAAGAATAAAGGAATACAGAGCGCGTCTTATACTGTTCCCGAAAGGCAAAAAGGTGCTGAAGGGTGAGGCCAATGAAGAAGAACGTAAGCTGGCTACACAGCTACGTGGTCCATTAATGCCAGTTCAACAGCCTGCTCCTAAATCAGTTGCAAGACCTATCACTGAAGATGAAAAGAACTTCAAAGCTTATCAATACCTGAGAGGAGCTCGCTCCATTGCCAAACTCGTCGGTATCCGGGCTAAGAGATTGAAGGATGCTGCTGAGAATCCGGATGATGTTACAAAAGCACCAACCGCTAAAGAAGTGAAGCCTAAAAAGTGA

Protein

MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIKKAKAVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTKAPTAKEVKPKK

Similarity

Belongs to the eukaryotic ribosomal protein eL13 family.

Keywords

Ribonucleoprotein   Ribosomal protein   3D-structure   Complete proteome   Reference proteome  

Feature

chain  60S ribosomal protein L13

Uniprot

Q5UAS6   Q5MAG6   R4ITA9   D1LYQ4   Q6L6T9   I4DLX3   + More
I4DID3   A0A3G1T1I8   A0A2A4JNB1   A0A194RGL2   Q962U1   A0A1E1VYU3   E7DZ45   S4NXI9   A0A212FIZ6   G0ZEG3   A0A0L7KP92   D1M823   Q56FE7   I3VPF8   A2IAC5   A0A1B6D8P6   A0A0X7YHL4   V5I9H5   A0A1B6CEB2   A0A2A3EDP1   V9IK74   A0A088ARA9   A0A1D1XNQ4   A0A2J7RII2   A0A1W4WT10   A0A154PJU5   A0A067R0I2   A0A026WJA5   A0A0L7RCN5   A0A2P8YQ21   E9IQB6   A0A195C2Q8   Q4GXI9   E2AVP2   A0A195DB76   F4WXF7   A0A158NLH4   A0A151X872   J3JV96   A0A195AXV0   A0A195F573   A0A232FKG1   K7IV97   A0A0J7KLC5   A0A1B6FQB9   A0A139WP72   Q4GXJ0   A0A0T6B710   Q0PXV2   A0A1S3CX58   A0A0K8TPK3   A0A0M8ZZY6   A0A1Y1K0R6   A0A1B6IZB7   A0A1B0CUX0   A0A1L8DRW0   A0A226F274   A0A0K8UUA7   N6T7U0   A0A034WL96   A0A0C9S121   A2I3Z1   A0A3B0KP61   Q29NF8   B4G7T8   W8C7W0   A0A1I8PZF8   A0A1L8EHK2   B3MPC5   A0A1B0ABA8   D3TPE1   A0A0A1X7N3   A0A1W4UUJ6   T1P7X9   A0A1A9VE66   C4WU19   J9K0L2   M9PFF0   P41126   A0A224XW64   B4M9F1   A0A1A9YGN4   A0A1B0C546   A0A0M4E527   B4HWE3   B3N907   B4Q8B3   Q6XIL3   A0A0P4VIY2   A0A023FAN5   A0A0M9A019   A0A0V0G2P2   A0A171B8D6  

Pubmed

19121390    28756777    22651552    26354079    14668217    23622113    + More
22118469    26227816    23049752    17437641    24845553    24508170    30249741    29403074    21282665    20798317    21719571    21347285    22516182    28648823    20075255    18362917    19820115    26369729    28004739    30926861    23537049    25348373    15632085    17994087    24495485    20353571    25830018    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    7557437    23636399    22936249    14525923    17550304    27129103    25474469   

EMBL

BABH01008006    AY769282    AAV34824.1    AY846882    AAV91770.1    JQ744275    + More
KZ150495    AGC39041.1    PZC70673.1    GU084328    ACY95361.1    AB179618    BAD18973.2    AK402291    BAM18913.1    AK401051    KQ459597    BAM17673.1    KPI94842.1    MG992394    AXY94832.1    NWSH01000990    PCG73208.1    KQ460207    KPJ16727.1    AF400183    GDQN01011213    JAT79841.1    HQ424748    ADT80692.1    GAIX01014180    JAA78380.1    AGBW02008321    OWR53701.1    JF265041    AEL28872.1    JTDY01007562    KOB65112.1    GU120447    ACY71297.1    AY961553    AAX62455.1    JW050240    AFK82397.1    EF179439    ABM55445.1    GEDC01015239    JAS22059.1    KC507336    AHB12459.1    GALX01002925    JAB65541.1    GEDC01025648    JAS11650.1    KZ288289    PBC29286.1    JR049228    AEY60901.1    GDJX01023925    JAT44011.1    NEVH01003500    PNF40644.1    KQ434931    KZC11764.1    KK852796    KDR16392.1    KK107218    QOIP01000001    EZA55184.1    RLU27216.1    KQ414615    KOC68608.1    PYGN01000439    PSN46355.1    GL764688    EFZ17250.1    KQ978344    KYM94875.1    AM049034    CAJ17270.1    GL443157    EFN62497.1    KQ981042    KYN10121.1    GL888424    EGI61123.1    ADTU01002153    KQ982431    KYQ56524.1    BT127163    AEE62125.1    KQ976716    KYM76865.1    KQ981805    KYN35608.1    NNAY01000096    OXU31020.1    LBMM01005971    KMQ91054.1    GECZ01017399    JAS52370.1    KQ971307    KYB29621.1    AM049033    CAJ17269.1    LJIG01009476    KRT83003.1    DQ673434    ABG82007.1    GDAI01001276    JAI16327.1    KQ435791    KOX74357.1    GEZM01097880    JAV54068.1    GECU01015412    JAS92294.1    AJWK01029739    GFDF01004881    JAV09203.1    LNIX01000001    MH637921    OXA63872.1    QBH73311.1    GDHF01022379    GDHF01002964    JAI29935.1    JAI49350.1    APGK01040820    KB740984    KB631899    ENN76294.1    ERL86940.1    GAKP01002621    JAC56331.1    GBYB01014386    JAG84153.1    EF070494    ABM55560.1    OUUW01000010    SPP85628.1    CH379060    EAL33384.1    CH479180    EDW28436.1    GAMC01000297    JAC06259.1    GFDG01000703    JAV18096.1    CH902620    EDV32244.1    CCAG010007529    EZ423293    ADD19569.1    GBXI01007140    JAD07152.1    KA644657    AFP59286.1    AK340870    BAH71389.1    ABLF02013101    AE014134    AGB92847.1    X77926    BT053725    BT128812    GFTR01003706    JAW12720.1    CH940654    EDW57827.1    JXJN01025823    CP012523    ALC38989.1    ALC39134.1    CH480818    EDW52338.1    CH954177    EDV58442.1    CM000361    CM002910    EDX04435.1    KMY89380.1    AY231817    CM000157    AAR09840.1    EDW88722.1    GDKW01001727    JAI54868.1    GBBI01000749    JAC17963.1    KOX74407.1    GECL01003726    JAP02398.1    GEMB01000150    JAS02963.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000053240    UP000007151    UP000037510    + More
UP000242457    UP000005203    UP000235965    UP000192223    UP000076502    UP000027135    UP000053097    UP000279307    UP000053825    UP000245037    UP000078542    UP000000311    UP000078492    UP000007755    UP000005205    UP000075809    UP000078540    UP000078541    UP000215335    UP000002358    UP000036403    UP000007266    UP000079169    UP000053105    UP000092461    UP000198287    UP000019118    UP000030742    UP000268350    UP000001819    UP000008744    UP000095300    UP000007801    UP000092445    UP000092444    UP000192221    UP000095301    UP000078200    UP000007819    UP000000803    UP000008792    UP000092443    UP000092460    UP000092553    UP000001292    UP000008711    UP000000304    UP000002282   

PRIDE

Q5UAS6    A0A088ARA9    M9PFF0    P41126   

Pfam

PF01294   Ribosomal_L13e        + More
PF00628   PHD

Interpro

IPR018256   Ribosomal_L13e_CS        + More
IPR001380   Ribosomal_L13e       
IPR001965   Znf_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR019787   Znf_PHD-finger       
IPR011011   Znf_FYVE_PHD       

SUPFAM

SSF57903   SSF57903       

Gene 3D

3.30.40.10    

ProteinModelPortal

Q5UAS6   Q5MAG6   R4ITA9   D1LYQ4   Q6L6T9   I4DLX3   + More
I4DID3   A0A3G1T1I8   A0A2A4JNB1   A0A194RGL2   Q962U1   A0A1E1VYU3   E7DZ45   S4NXI9   A0A212FIZ6   G0ZEG3   A0A0L7KP92   D1M823   Q56FE7   I3VPF8   A2IAC5   A0A1B6D8P6   A0A0X7YHL4   V5I9H5   A0A1B6CEB2   A0A2A3EDP1   V9IK74   A0A088ARA9   A0A1D1XNQ4   A0A2J7RII2   A0A1W4WT10   A0A154PJU5   A0A067R0I2   A0A026WJA5   A0A0L7RCN5   A0A2P8YQ21   E9IQB6   A0A195C2Q8   Q4GXI9   E2AVP2   A0A195DB76   F4WXF7   A0A158NLH4   A0A151X872   J3JV96   A0A195AXV0   A0A195F573   A0A232FKG1   K7IV97   A0A0J7KLC5   A0A1B6FQB9   A0A139WP72   Q4GXJ0   A0A0T6B710   Q0PXV2   A0A1S3CX58   A0A0K8TPK3   A0A0M8ZZY6   A0A1Y1K0R6   A0A1B6IZB7   A0A1B0CUX0   A0A1L8DRW0   A0A226F274   A0A0K8UUA7   N6T7U0   A0A034WL96   A0A0C9S121   A2I3Z1   A0A3B0KP61   Q29NF8   B4G7T8   W8C7W0   A0A1I8PZF8   A0A1L8EHK2   B3MPC5   A0A1B0ABA8   D3TPE1   A0A0A1X7N3   A0A1W4UUJ6   T1P7X9   A0A1A9VE66   C4WU19   J9K0L2   M9PFF0   P41126   A0A224XW64   B4M9F1   A0A1A9YGN4   A0A1B0C546   A0A0M4E527   B4HWE3   B3N907   B4Q8B3   Q6XIL3   A0A0P4VIY2   A0A023FAN5   A0A0M9A019   A0A0V0G2P2   A0A171B8D6  

PDB

4V6W     E-value=1.5634e-55,     Score=544

KEGG

692667    K02873 large subunit ribosomal protein L13e | (RefSeq) RpL13; ribosomal protein L13

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0003735   GO:0006412   GO:0022625   GO:0046872   GO:0016021   GO:0022626   GO:0002181   GO:0005622   GO:0004823   GO:0006429   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

PANTHER

PTHR11722  

Length:

220

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00776

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.10115

outside

1  -  220

 

 

Pi

217.54203

Theta

205.21001

Tajima's D

-1.382783

CLR

3.67524

CSRT

0.0774961251937403

Interpretation

Uncertain