SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02723  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003468
Annotation
PREDICTED:_zinc_finger_protein_on_ecdysone_puffs-like_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 4.467
 

Sequence

CDS
ATGTCGTCCCGAGGTCGTGGTTATTATGGACGAGTGAGCTACAGTGGTGGTAGAGGTAGCGGATACAGAGGTTCTTATAGAGGCAGTAGCAATCGAGGCAGTTATGAAAGCCGTGGAGGCCGTGGTGGTGGCGCAAGCTATTCATCATACAATAATGATACTCGTTATAATAGCGGTGGAAGGAGTTACAACACCAGTCGTGACAGAGTAGATGAATCTTACAAAAAAACATATCGAAATGAAAGCTCTGTTAACTATTCAAACAGAGAGTATGGAGGTAGAGGAGGATCACCAGAAAGAAAAAGAATGAGGATGGAGGGACCAGCCGAAAGACGTAGCCATGACGGCGGCGGCGGTCATTACGGCGGGTCCTACAGCTCAAGGCAGGAAAATTACGGAGGCGAAAGGAGGTCCTTCGGTGGGGATGAACGAAGACGATCGCCCGCCAGAGAAAGCTACCGCAAACCAAGCGGTATGGGCCCCCCGCGAGAGCCGCGCATCGGCACCCGCCCGCGCCGCCCCTTCCGTGGCCGCACTCTGCGCTCGCGAGCATCCTATCGCGGCACACCGCGCTCGCGTGCCTCCTTTACGAGGCGGTTCGCTGATAGAACCCTCAATTACAACCGTGCCTTTAGAAGCGTCAAGGGACGCAGTTCCATCAAATCCAAAGAAGAAGCATCCTCAACTGAAGAAGATTGGGATGCTGACGACAAAGAAGAAATAACTGAAGAAAAGAAAGAACCAAAAAATAAGTCACCAAAGGTGGAGGCAGAAGATTCTGATGCTGAAGCTGCTGTTGTCGGTGGAGTTGCTGGTGATGATACAGATAAGGAGCCCGATGCCGCCTCCGATACTGCGACGCGGCCCTTTGTTAATCTTATGTGTGTTCACTGCAAAGAAAAATGCCCCACTTTTGCGAGGTACACAAAACATTTGGTGTCAGTGAGACACCGCGCAGCGATGGGTGTGGTGGCACGGCGCCACAAGACTCAGCTGCTCCGCATGCGCGTGGCCCAACGCGTGGCTCAACGTGAACTGGAAGCAGCAGCAGGCGCTGATCTCGCCGAGCGCACGACATTCTGTCCCGTATGTCGCCTCAACCATCGCACCACGCGCGAGGCTCACAACCTCACCGATACTCATCGAGCTATGAAGCGCTTCCTTATGCCCTTCTGTCGAATTTGTCGCACTACATATCGTTCGCCTATGATCTATGAACATCATATATGTTCGCTCGAACATCTTAAGAAAAAAGCAAACAAGTCTTTACGCCATGCGAGTCCAAAAGCTGAGGGTAGTGGTGATGAGGGCATGAATGTTGATTTGGATAATTTCATGACACTTGATTCTGTTGGTGATGTTGATGAAGTCGAGGATGATGACTCGGGAACAGAAAAAAAAGATGAAGGTAGTCCAAAAAAAACAAAAGCAGAAATTAACATTGGAAGTGAACACATTAAGAAGTTGGAGGTGTGGTGGTGTGAGCTTTGCCGCACATATCTAACGCGCGCCGAGACCGGTGGTGCCGAACTGACAGAGGTTGTGCGGCGCCACTGTCGACTTCGTCTCCATCTCGGGCGATATGTGCAGTACCGTGACACTCGCACGCTTCGGAAGCATGCTGAGCGCATTCATCGACAGCTTCATCAGCAGAAACAAGATGTGGAAGAATCTGCAAATGATGTTGTTGCTAAAGGTAAAGAAGAAAAAGAGGAAACTATTGATGAAGTTAAGAAAAAACTGGACAATACTACTGAAACTTCAAATATGTCGGCAAATGAAGACAAATTGTGGGCTGATGTTGATAAAGACATTGGAGAACTTCTTCGAGAAGTGGACCCACAAGGAAATGAAGGAACTGATGATGAAGAGGACCTAGACAGATATGAAAAGTTCCGAAAAACCGATACCAAAAAAGCTAAGAATATTGAGAGTGAAAATAATGAATCCATTGTCTTGAATTCATCGGGTGAAAAGAAATCTGTTGAAGTTAATACTTCTGCTTAA
Protein
MSSRGRGYYGRVSYSGGRGSGYRGSYRGSSNRGSYESRGGRGGGASYSSYNNDTRYNSGGRSYNTSRDRVDESYKKTYRNESSVNYSNREYGGRGGSPERKRMRMEGPAERRSHDGGGGHYGGSYSSRQENYGGERRSFGGDERRRSPARESYRKPSGMGPPREPRIGTRPRRPFRGRTLRSRASYRGTPRSRASFTRRFADRTLNYNRAFRSVKGRSSIKSKEEASSTEEDWDADDKEEITEEKKEPKNKSPKVEAEDSDAEAAVVGGVAGDDTDKEPDAASDTATRPFVNLMCVHCKEKCPTFARYTKHLVSVRHRAAMGVVARRHKTQLLRMRVAQRVAQRELEAAAGADLAERTTFCPVCRLNHRTTREAHNLTDTHRAMKRFLMPFCRICRTTYRSPMIYEHHICSLEHLKKKANKSLRHASPKAEGSGDEGMNVDLDNFMTLDSVGDVDEVEDDDSGTEKKDEGSPKKTKAEINIGSEHIKKLEVWWCELCRTYLTRAETGGAELTEVVRRHCRLRLHLGRYVQYRDTRTLRKHAERIHRQLHQQKQDVEESANDVVAKGKEEKEETIDEVKKKLDNTTETSNMSANEDKLWADVDKDIGELLREVDPQGNEGTDDEEDLDRYEKFRKTDTKKAKNIESENNESIVLNSSGEKKSVEVNTSA

Summary

Interpro
IPR026811   CIZ1        + More
IPR003604   Matrin/U1-like-C_Znf_C2H2       
IPR006553   Leu-rich_rpt_Cys-con_subtyp       
IPR011989   ARM-like       
IPR032675   LRR_dom_sf       
IPR016024   ARM-type_fold       
SUPFAM
SSF48371   SSF48371       
Gene 3D

Ontologies

Topology

Length:
668
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00054
Exp number, first 60 AAs:
0.00054
Total prob of N-in:
0.00046
outside
1  -  668
 
 

Population Genetic Test Statistics

Pi
321.309509
Theta
227.102273
Tajima's D
1.169031
CLR
0
CSRT
0.708764561771911
Interpretation
Uncertain
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