Gene

KWMTBOMO02720

Pre Gene Modal

BGIBMGA003467

Annotation

PREDICTED:_probable_leucine--tRNA_ligase?_mitochondrial_[Amyelois_transitella]

Location

Bomo_Chr5(+):9566251-9571009      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.803

CDS

ATGCACAATGTAACTATAACCTTTCGTAGAAGGAAAACAAGCTTAGGATTATGGCATGAAGATATTAACAGAGATATAAAAATTAAAATAGAAAAATATTGGTCAAATGAAGTGTTGCACAGAGAAATCAGTAATGCCGATCCTGTCTACTATGTTTTACCTATGTTCCCTTATCCTTCTGGTAACCTGCACATGGGACATGTTAGAGTGTACTCGATATCTGATGCATTAACACGCTTTCACAAGTTAAATGGATACAAAGTAATACATCCAATTGGTTGGGATGCATTTGGTTTACCTGCTGAAAATGCTGCAATCGAAAGGAACATACCACCTTATAAATGGACAAAATCTAATATAGAGAAGATGAAACAACAATTGTTACAGTTGGGTTTTGAATTTGACTGGACTAGAGAAATATCAACTTGTAACCCTCATTATTATAAATGGACACAGTACATATTCTTGAAGCTGTTGGAAAATGGCTTAGCTTATCAATGTAAGGCTGAAGTGAACTGGGACCCTGTAGATCAAACAGTATTAGCTGATGAACAAGTGGATGATCTTGGTTGTTCATGGAGATCTGGGGTGAAAGTAGAAAAAAAGTTACTGACTCAATGGTTTATCAAAACTACTAAGTATGCCAAAAAATTATTAGATGGATTAAAAGACAAAAGCTTAGAAAACTGGAAGGACATAATTAATTTGCAAAGACACTGGATTGGTGATTGTGATGGCACAGTAGTAACATTCAAGTTAAATGTTGATGGAACCATGAAACTATTTGATGTATGGACTAAAAATCCCTATAAATATATACATGGTACTTTTATAGTAATGAAAAGTAGTCATCCTCTGTTACAAGGGCATACATACAACTCTGGCCTGTCCTGTCTAAACCCAATAACAGACTCAGAAATGCCTGTCTACATGTGTGATACTGTTGAATATCCAGAAGGTAGAGATGTTTTGATTGCTTGTCCAACTCAAGATGAAACAGATAATCAAATTGCACAAGCCTTGCAAATTTCCATAGATCAAGAGAATAAAAAAGACATAGCTATTGAAAGTGACAGTTTAAAAGCTATAGAGATTGCTAGGAACAAGAATGTAGGTGGTCACTTTGTTAGTTCCAAACTTAAAGATTGGCTCATATCCAGACAGAGATACTGGGGTACACCAATACCCATAATCTACTGTCCCAAATGCAATATTGTTCCTGTTCCTTATGAAGATCTGCCAGTTGTATTACCAGAACTTGATACTCACTCAGGCATCCAAACATTACAATCATTAGATAATTGGGTCAATTGTAAATGTCCTAAATGTCACTCGAATGCTAAAAGAGAAACTGATACAATGGACACATTTGTTGACTCTTCCTGGTATTTTTATAGATTTTTGGATCCTAAAAACGAATTTGCTCCTTTTAATAAAGAAAAATTGAAAAATTCTACACCAGTTGACATTTATATTGGGGGTAAGGAACATGCAGTGCTACATTTATATTATGCTCGGTTTATGAGTTATTTTTTAAATTCTTTGGGAATGACTTATGTTGAAGAGCCTTTTAAAAAATTGTTGGTACAAGGGATGGTAATGGGACAATCTTATAAAGTTAAATCTTCTGGTAAGTATTTACCACCTGAAAATGTAGAAAAATTTGGAGAAATTTATAAAGAAAAAGGCACAGGTGAACCAGTATTAGTTCAGTGGGAAAAAATGAGCAAATCAAAATACAATGGTGAAAATCCTGAAAGACTCCTTGAGTCTTATGGTTGTGATATGACAAGACTTTTAATACTAGCTGATGTACCACCAGGTACACCCAGGCGTTGGTCTGATGCAACATTGCCTGGGTGTTTGAACTGGCAACATCGTCTTTGGATGACTATGAGAGAATTTCTAAAATATCGTGCGAATAACTTTGAAAGTAATAGCTTGAGTCCTGAAGAATTCAAAAAAATTGAGAGCAAAATCTGGGAAAACCGAAACTATTTTACTGCTACCACTACATATCATTTCAGGGACACTCAAAAACTCAGTGTTGGCATTTCCCGACTTCAAAGCTTAACAAGTACTCTACGGAACAATATTCCACCTGAAGTGTACGCGAGAAGCAAGGAATTCGAATTAGCTTTGGCGGCTCTTATTATAATGGCATCTCCTATTACTCCACACTTTTGTTCTGAATTGTGGGCTGGATTATTATCGGCTCCGCATCGAATCTCTTCACATAATTCTACAATTAACTGGGAGAACAATGTATTAGAACAGAACTGGCCCGTTGTTGATGATCACTACAAATTGTCATTTTTGTGCAAAGTAGACGGAGCAGATAGATGTGAATTAAAAATTAAAGCGGCTGAACTTAATAATTTACACGAAGAAAGAGCTTTGCAAGTCATGCTTAACGAAGAAAGTGTACAAAAGTGGACACGGAGAGGTGTTTTACGTCAAAAGTATGAATTGTATCCGGGTTGTCGGGCCATACTGCATATATTCACGAATAAGAAACAAAAACAAGTAGAAGAAGTTTAA

Protein

MHNVTITFRRRKTSLGLWHEDINRDIKIKIEKYWSNEVLHREISNADPVYYVLPMFPYPSGNLHMGHVRVYSISDALTRFHKLNGYKVIHPIGWDAFGLPAENAAIERNIPPYKWTKSNIEKMKQQLLQLGFEFDWTREISTCNPHYYKWTQYIFLKLLENGLAYQCKAEVNWDPVDQTVLADEQVDDLGCSWRSGVKVEKKLLTQWFIKTTKYAKKLLDGLKDKSLENWKDIINLQRHWIGDCDGTVVTFKLNVDGTMKLFDVWTKNPYKYIHGTFIVMKSSHPLLQGHTYNSGLSCLNPITDSEMPVYMCDTVEYPEGRDVLIACPTQDETDNQIAQALQISIDQENKKDIAIESDSLKAIEIARNKNVGGHFVSSKLKDWLISRQRYWGTPIPIIYCPKCNIVPVPYEDLPVVLPELDTHSGIQTLQSLDNWVNCKCPKCHSNAKRETDTMDTFVDSSWYFYRFLDPKNEFAPFNKEKLKNSTPVDIYIGGKEHAVLHLYYARFMSYFLNSLGMTYVEEPFKKLLVQGMVMGQSYKVKSSGKYLPPENVEKFGEIYKEKGTGEPVLVQWEKMSKSKYNGENPERLLESYGCDMTRLLILADVPPGTPRRWSDATLPGCLNWQHRLWMTMREFLKYRANNFESNSLSPEEFKKIESKIWENRNYFTATTTYHFRDTQKLSVGISRLQSLTSTLRNNIPPEVYARSKEFELALAALIIMASPITPHFCSELWAGLLSAPHRISSHNSTINWENNVLEQNWPVVDDHYKLSFLCKVDGADRCELKIKAAELNNLHEERALQVMLNEESVQKWTRRGVLRQKYELYPGCRAILHIFTNKKQKQVEEV

Similarity

Belongs to the class-I aminoacyl-tRNA synthetase family.

Uniprot

A0A2A4JI67   A0A194RHC1   A0A194PNE2   A0A2A4JHY2   A0A0L7KRM2   A0A212FJ02   + More
A0A2H1WQV9   A0A1Q3F4U7   A0A2J7RII5   B0WM19   Q173I5   W5JAH5   A0A182R6C2   A0A182XBA9   A0A1S4GDM0   Q7PUP5   A0A182UD23   A0A084VHC3   A0A182UMJ3   A0A2J7RII9   A0A182LH20   A0A182I051   A0A182NCF6   A0A182M1T1   D6WEL0   A0A182J7X5   A0A067R0U9   A0A182FKS6   A0A336KLU8   A0A1I8QCI7   A0A182SXQ7   A0A182XVX8   A0A336LSB9   A0A182VZ20   A0A2M4BEF2   A0A182GHL6   A0A1I8MVB3   A0A182QR44   A0A182JS01   A0A0K8W4U8   A0A1W4WZ58   A0A182PRK3   J9LAG4   A0A0L0BM60   Q29E99   A0A0A1X3Y5   B4PIC1   B4H1Q4   A0A1W4VMY1   A0A3B0J6E7   B4IZ63   B4QR29   B4HUB2   A0A1A9WLE5   Q9VZ82   B3NG68   W8BIC6   B4MMX0   A0A0P6FXF3   A0A0P6HJC3   A0A1B6CNJ0   A0A0P5P1X2   A0A0P5S405   A0A0N7ZRK2   A0A0P4YTX5   B4MG06   A0A0P5GK68   A0A1A9XXG5   A0A0N8D488   A0A1A9ZUG1   A0A1J1IHD3   A0A232FJV1   A0A0N8CKL4   A0A1W4WN52   K7IV96   A0A1B0B0C3   A0A1B0FMG8   A0A3B0K2E0   B3M9K8   A0A1B0CBE0   B4KXC0   A0A0P4XWB2   A0A0C9R6J9   A0A1A9VAL4   A0A0M5J064   A0A069DXD0   A0A224XIQ9   A0A0L7RCS9   A0A023F2M4   A0A0M9A1B2   A0A1B0D600   A0A1B6GVW7   A0A195DB28   A0A1B6LKZ8   A0A158NLJ7   A0A0P5LST0   A0A195AY45   A0A3L8E474   A0A0P4Z6D7  

Pubmed

26354079    26227816    22118469    17510324    20920257    23761445    + More
12364791    24438588    20966253    18362917    19820115    24845553    25244985    26483478    25315136    26108605    15632085    17994087    25830018    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485    28648823    20075255    26334808    25474469    21347285    30249741   

EMBL

NWSH01001393    PCG71408.1    KQ460207    KPJ16720.1    KQ459597    KPI94837.1    + More
PCG71409.1    JTDY01006845    KOB65649.1    AGBW02008321    OWR53705.1    ODYU01010383    SOQ55460.1    GFDL01012488    JAV22557.1    NEVH01003500    PNF40648.1    DS231993    EDS30833.1    CH477423    EAT41211.1    ADMH02002044    ETN59789.1    AAAB01008987    EAA01232.5    ATLV01013151    KE524842    KFB37367.1    PNF40647.1    APCN01002043    AXCM01002255    KQ971318    EFA00333.1    KK852796    KDR16393.1    UFQS01000659    UFQT01000659    SSX05874.1    SSX26233.1    UFQS01000150    UFQT01000150    SSX00532.1    SSX20912.1    GGFJ01002057    MBW51198.1    JXUM01063988    KQ562277    KXJ76256.1    AXCN02000019    GDHF01006232    JAI46082.1    ABLF02020894    JRES01001653    KNC21136.1    CH379070    EAL30162.3    GBXI01008822    JAD05470.1    CM000159    EDW93463.1    CH479203    EDW30256.1    OUUW01000002    SPP77557.1    CH916366    EDV95585.1    CM000363    CM002912    EDX09266.1    KMY97683.1    CH480817    EDW50533.1    AE014296    AY089557    AAF47943.1    AAL90295.1    CH954178    EDV50969.1    GAMC01009802    JAB96753.1    CH963847    EDW73526.1    GDIQ01044256    JAN50481.1    GDIQ01018880    JAN75857.1    GEDC01022340    GEDC01007472    GEDC01005049    JAS14958.1    JAS29826.1    JAS32249.1    GDIQ01155664    JAK96061.1    GDIQ01097136    JAL54590.1    GDIP01219521    JAJ03881.1    GDIP01227314    JAI96087.1    CH940669    EDW58267.1    GDIP01235368    GDIQ01240077    LRGB01002864    JAI88033.1    JAK11648.1    KZS05747.1    GDIP01070343    JAM33372.1    CVRI01000049    CRK99178.1    NNAY01000096    OXU31011.1    GDIP01122535    JAL81179.1    AAZX01001186    JXJN01006706    CCAG010010362    SPP77558.1    CH902618    EDV39014.1    AJWK01005068    CH933809    EDW17578.1    GDIP01237077    JAI86324.1    GBYB01008432    JAG78199.1    CP012525    ALC43061.1    GBGD01000552    JAC88337.1    GFTR01008096    JAW08330.1    KQ414615    KOC68609.1    GBBI01003428    JAC15284.1    KQ435791    KOX74356.1    AJVK01011900    AJVK01011901    GECZ01003175    JAS66594.1    KQ981042    KYN10120.1    GEBQ01015634    JAT24343.1    ADTU01002153    GDIQ01190306    JAK61419.1    KQ976716    KYM76864.1    QOIP01000001    RLU27215.1    GDIP01218013    JAJ05389.1   

Proteomes

UP000218220    UP000053240    UP000053268    UP000037510    UP000007151    UP000235965    + More
UP000002320    UP000008820    UP000000673    UP000075900    UP000076407    UP000007062    UP000075902    UP000030765    UP000075903    UP000075882    UP000075840    UP000075884    UP000075883    UP000007266    UP000075880    UP000027135    UP000069272    UP000095300    UP000075901    UP000076408    UP000075920    UP000069940    UP000249989    UP000095301    UP000075886    UP000075881    UP000192223    UP000075885    UP000007819    UP000037069    UP000001819    UP000002282    UP000008744    UP000192221    UP000268350    UP000001070    UP000000304    UP000001292    UP000091820    UP000000803    UP000008711    UP000007798    UP000008792    UP000076858    UP000092443    UP000092445    UP000183832    UP000215335    UP000002358    UP000092460    UP000092444    UP000007801    UP000092461    UP000009192    UP000078200    UP000092553    UP000053825    UP000053105    UP000092462    UP000078492    UP000005205    UP000078540    UP000279307   

Pfam

PF00133   tRNA-synt_1        + More
PF08264   Anticodon_1
PF09745   DUF2040
PF09334   tRNA-synt_1g
PF13603   tRNA-synt_1_2
PF09349   OHCU_decarbox

Interpro

IPR009080   tRNAsynth_Ia_anticodon-bd        + More
IPR013155   M/V/L/I-tRNA-synth_anticd-bd       
IPR002302   Leu-tRNA-ligase       
IPR009008   Val/Leu/Ile-tRNA-synth_edit       
IPR001412   aa-tRNA-synth_I_CS       
IPR014729   Rossmann-like_a/b/a_fold       
IPR002300   aa-tRNA-synth_Ia       
IPR018612   DUF2040       
IPR015413   Methionyl/Leucyl_tRNA_Synth       
IPR025709   Leu_tRNA-synth_edit       
IPR017580   OHCU_decarboxylase-1       
IPR036778   OHCU_decarboxylase_sf       
IPR018020   OHCU_decarboxylase       

SUPFAM

SSF47323   SSF47323        + More
SSF50677   SSF50677       
SSF158694   SSF158694       

Gene 3D

3.40.50.620     3.90.740.10     1.10.3330.10    

ProteinModelPortal

A0A2A4JI67   A0A194RHC1   A0A194PNE2   A0A2A4JHY2   A0A0L7KRM2   A0A212FJ02   + More
A0A2H1WQV9   A0A1Q3F4U7   A0A2J7RII5   B0WM19   Q173I5   W5JAH5   A0A182R6C2   A0A182XBA9   A0A1S4GDM0   Q7PUP5   A0A182UD23   A0A084VHC3   A0A182UMJ3   A0A2J7RII9   A0A182LH20   A0A182I051   A0A182NCF6   A0A182M1T1   D6WEL0   A0A182J7X5   A0A067R0U9   A0A182FKS6   A0A336KLU8   A0A1I8QCI7   A0A182SXQ7   A0A182XVX8   A0A336LSB9   A0A182VZ20   A0A2M4BEF2   A0A182GHL6   A0A1I8MVB3   A0A182QR44   A0A182JS01   A0A0K8W4U8   A0A1W4WZ58   A0A182PRK3   J9LAG4   A0A0L0BM60   Q29E99   A0A0A1X3Y5   B4PIC1   B4H1Q4   A0A1W4VMY1   A0A3B0J6E7   B4IZ63   B4QR29   B4HUB2   A0A1A9WLE5   Q9VZ82   B3NG68   W8BIC6   B4MMX0   A0A0P6FXF3   A0A0P6HJC3   A0A1B6CNJ0   A0A0P5P1X2   A0A0P5S405   A0A0N7ZRK2   A0A0P4YTX5   B4MG06   A0A0P5GK68   A0A1A9XXG5   A0A0N8D488   A0A1A9ZUG1   A0A1J1IHD3   A0A232FJV1   A0A0N8CKL4   A0A1W4WN52   K7IV96   A0A1B0B0C3   A0A1B0FMG8   A0A3B0K2E0   B3M9K8   A0A1B0CBE0   B4KXC0   A0A0P4XWB2   A0A0C9R6J9   A0A1A9VAL4   A0A0M5J064   A0A069DXD0   A0A224XIQ9   A0A0L7RCS9   A0A023F2M4   A0A0M9A1B2   A0A1B0D600   A0A1B6GVW7   A0A195DB28   A0A1B6LKZ8   A0A158NLJ7   A0A0P5LST0   A0A195AY45   A0A3L8E474   A0A0P4Z6D7  

PDB

6Q8C     E-value=1.55558e-136,     Score=1249

KEGG

101736198    K01869 leucyl-tRNA synthetase [EC:6.1.1.4] | (RefSeq) probable leucine--tRNA ligase, mitochondrial

PATHWAY

00970    Aminoacyl-tRNA biosynthesis - Bombyx mori (domestic silkworm)

GO

GO:0005524   GO:0004823   GO:0002161   GO:0006429   GO:0005739   GO:0032543   GO:0019428   GO:0005759   GO:0004812   GO:0006412   GO:0000166   GO:0006418   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

PANTHER

PTHR43740  

Length:

846

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.16423

Exp number, first 60 AAs:

0.03849

Total prob of N-in:

0.00387

outside

1  -  846

 

 

Pi

276.693339

Theta

207.992616

Tajima's D

1.072171

CLR

0.093276

CSRT

0.674916254187291

Interpretation

Uncertain