Gene

KWMTBOMO02717

Pre Gene Modal

BGIBMGA003729

Annotation

PREDICTED:_nuclear_speckle_splicing_regulatory_protein_1_[Amyelois_transitella]

Location

Bomo_Chr5(-):9546618-9552590      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.425

CDS

ATGGCATCAAAAAAATATGGTTTGATTGTACCTGAGAAGGGGGGTAAGCAGCTCAACACACTTAAATTCCAAGCATCTCGTAACGTCTTTGGCAATGAGTCTGATTCTGATGATGACACAAAGAAAAAGACACACTTATTGCGGCCTAGTGACAATATTAATAGACAGGCCAAGATTTCCCAAGAGAAAGCATTGTTAGAAGATCCCACTGTTTATCAATATGATGAAATATATGACGAAGTTAAAAGTAAAAAAGAAAAAGTAAAGATAAAAGAAGAAAGGAAGCCAAAATATATCGAAAATTTGATCAAAACAGCCAATAAGAGAAAATTAGAAAATGAACGCAGAGTTGAAAGACAGATACAAAAGGAAAGAGAAAAGGAGGGGGATGAATTTAAAGATAAAGAAGTATTTGTTACTTCTGCTTATAAGAAGAAATTGGAGGAAATGAAGATAGAAGAAGAAAAAGAAAAAAGGGAAGAATATCTTGAAAGCATAGGAGATGTCACTAAGCAACATGATTTGGGTGGTTTTTATCGTCATTTATATGAGCAAAAACTAGGAAATCCTGACAACAAGGAGTGTAAAAGTACTGAGACAATGGAGAAAATGCATACAAATAACCCATCAACTTATAAAGATCCAACAGAAACACTAAAGAAAAGAAACTATCGGAAAAGAGAAGTTACCAATGATAATGCATTATTATCTGATGGGGAAATTGAAGATTCTGATGAAGAAGTAAATCGTGTTAATCTTGAACAAATGAGAAAAATAAAACGATTAAAGAAAGATAATGAGAATATTGATGCTGACTCTGATTTTTCAATTGATGATCCTAGTGATGAAGAAAATGAAAAAGATCCAAAAACTAAAAAGTCCACAAAAGGTGAAGTTAATAAGTCTGAAACGGATGCTGAATTTGACAAACAACCAAAAACTGAAACAATAAAATTAGAAACACAAAATAAAAACAATAAGAAAAAGAATGCTGAAATAGAGACAAAAGAAAAAATTGACATCTGGAAAAAGAGAACTGTGGGTTTGGTGTTTGAAGAGGCACTCAAACGATATTATGACAGAAAAGCTGCAAGAGGACACTAG

Protein

MASKKYGLIVPEKGGKQLNTLKFQASRNVFGNESDSDDDTKKKTHLLRPSDNINRQAKISQEKALLEDPTVYQYDEIYDEVKSKKEKVKIKEERKPKYIENLIKTANKRKLENERRVERQIQKEREKEGDEFKDKEVFVTSAYKKKLEEMKIEEEKEKREEYLESIGDVTKQHDLGGFYRHLYEQKLGNPDNKECKSTETMEKMHTNNPSTYKDPTETLKKRNYRKREVTNDNALLSDGEIEDSDEEVNRVNLEQMRKIKRLKKDNENIDADSDFSIDDPSDEENEKDPKTKKSTKGEVNKSETDAEFDKQPKTETIKLETQNKNNKKKNAEIETKEKIDIWKKRTVGLVFEEALKRYYDRKAARGH

Similarity

Belongs to the class-I aminoacyl-tRNA synthetase family.

Uniprot

H9J2J2   A0A2A4JJ08   A0A2H1VUL5   A0A212FIZ4   A0A194PNE2   S4PF08   + More
A0A0L7KRF0   U5EFA5   B4NQ22   W8CCW1   B0WW91   A0A2M4CZC1   A0A1Q3F5J1   A0A2M4AV35   A0A2M4AUT2   N6T296   A0A2M4CPN1   E2BG80   W5JKM6   A0A0K8SGT7   A0A182FW36   A0A151I4R4   E2AE73   A0A0A9XZF5   A0A158N9I4   A0A0J7KYJ2   A0A151XGI1   E9IW53   A0A0K8UB69   A0A154PDX4   A0A195E1I8   A0A0K8V1E3   A0A182JX00   A0A0K8TS54   F4X479   A0A182TIY6   A0A034WIQ6   A0A1B6CM73   Q9VYE3   A0A151JV62   A0A2A3ER56   A0A182J4Y0   A0A151I9Z9   A0A3L8E4G6   A0A026WEW1   A0A0M9A6G0   Q95S36   B4JWT0   B4L6U2   A0A2R7WN23   A0A2R5LIZ0   A0A1S3KGX5   V9KE74   A0A023FMB6   V9L1N3   V9IBQ9   A0A146LJI6   A0A131XR95   A0A293LTI9   A0A224YTS5   G3ML41   A0A218UUS1  

Pubmed

19121390    22118469    26354079    23622113    26227816    17994087    + More
24495485    23537049    20798317    20920257    23761445    25401762    21347285    21282665    26369729    21719571    25348373    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    30249741    24508170    24402279    26823975    28049606    28797301    22216098   

EMBL

BABH01008014    BABH01008015    NWSH01001393    PCG71403.1    ODYU01004538    SOQ44531.1    + More
AGBW02008321    OWR53706.1    KQ459597    KPI94837.1    GAIX01004257    JAA88303.1    JTDY01006845    KOB65650.1    GANO01003944    JAB55927.1    CH964291    EDW86247.1    GAMC01003006    JAC03550.1    DS232140    EDS35923.1    GGFL01006451    MBW70629.1    GFDL01012211    JAV22834.1    GGFK01011251    MBW44572.1    GGFK01011236    MBW44557.1    APGK01055258    KB741261    KB632413    ENN71638.1    ERL95266.1    GGFL01003112    MBW67290.1    GL448116    EFN85288.1    ADMH02000909    ETN64696.1    GBRD01013324    JAG52502.1    KQ976461    KYM84708.1    GL438827    EFN68306.1    GBHO01017422    JAG26182.1    ADTU01009655    LBMM01002041    KMQ95363.1    KQ982169    KYQ59467.1    GL766449    EFZ15290.1    GDHF01028719    JAI23595.1    KQ434886    KZC10089.1    KQ979814    KYN19015.1    GDHF01032142    GDHF01019894    GDHF01004777    JAI20172.1    JAI32420.1    JAI47537.1    GDAI01000622    JAI16981.1    GL888628    EGI58747.1    GAKP01005299    JAC53653.1    GEDC01023774    GEDC01022766    GEDC01016371    JAS13524.1    JAS14532.1    JAS20927.1    AE014298    BT150054    AAF48258.2    AGJ89716.1    KQ981713    KYN37344.1    KZ288202    PBC33521.1    KQ978264    KYM95837.1    QOIP01000001    RLU27581.1    KK107260    EZA54201.1    KQ435740    KOX76819.1    AY060972    AAL28520.1    CH916376    EDV95206.1    CH933812    EDW06088.1    KK855030    PTY20400.1    GGLE01005345    MBY09471.1    JW863746    AFO96263.1    GBBK01002604    JAC21878.1    JW872738    AFP05256.1    JR037975    AEY58062.1    GDHC01012029    JAQ06600.1    GEFH01000385    JAP68196.1    GFWV01007104    MAA31834.1    GFPF01006845    MAA17991.1    JO842592    AEO34209.1    MUZQ01000126    OWK57378.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000037510    UP000007798    + More
UP000002320    UP000019118    UP000030742    UP000008237    UP000000673    UP000069272    UP000078540    UP000000311    UP000005205    UP000036403    UP000075809    UP000076502    UP000078492    UP000075881    UP000007755    UP000075902    UP000000803    UP000078541    UP000242457    UP000075880    UP000078542    UP000279307    UP000053097    UP000053105    UP000001070    UP000009192    UP000085678    UP000197619   

PRIDE

H9J2J2    Q9VYE3    Q95S36   

Pfam

PF09745   DUF2040        + More
PF04930   FUN14
PF08264   Anticodon_1
PF00133   tRNA-synt_1

Interpro

IPR018612   DUF2040        + More
IPR007014   FUN14       
IPR001412   aa-tRNA-synth_I_CS       
IPR009008   Val/Leu/Ile-tRNA-synth_edit       
IPR002300   aa-tRNA-synth_Ia       
IPR014729   Rossmann-like_a/b/a_fold       
IPR013155   M/V/L/I-tRNA-synth_anticd-bd       
IPR009080   tRNAsynth_Ia_anticodon-bd       
IPR002302   Leu-tRNA-ligase       

SUPFAM

SSF50677   SSF50677        + More
SSF47323   SSF47323       

Gene 3D

3.40.50.620    

ProteinModelPortal

H9J2J2   A0A2A4JJ08   A0A2H1VUL5   A0A212FIZ4   A0A194PNE2   S4PF08   + More
A0A0L7KRF0   U5EFA5   B4NQ22   W8CCW1   B0WW91   A0A2M4CZC1   A0A1Q3F5J1   A0A2M4AV35   A0A2M4AUT2   N6T296   A0A2M4CPN1   E2BG80   W5JKM6   A0A0K8SGT7   A0A182FW36   A0A151I4R4   E2AE73   A0A0A9XZF5   A0A158N9I4   A0A0J7KYJ2   A0A151XGI1   E9IW53   A0A0K8UB69   A0A154PDX4   A0A195E1I8   A0A0K8V1E3   A0A182JX00   A0A0K8TS54   F4X479   A0A182TIY6   A0A034WIQ6   A0A1B6CM73   Q9VYE3   A0A151JV62   A0A2A3ER56   A0A182J4Y0   A0A151I9Z9   A0A3L8E4G6   A0A026WEW1   A0A0M9A6G0   Q95S36   B4JWT0   B4L6U2   A0A2R7WN23   A0A2R5LIZ0   A0A1S3KGX5   V9KE74   A0A023FMB6   V9L1N3   V9IBQ9   A0A146LJI6   A0A131XR95   A0A293LTI9   A0A224YTS5   G3ML41   A0A218UUS1  

KEGG

101737367    K13206 coiled-coil domain-containing protein 55 | (RefSeq) nuclear speckle splicing regulatory prote

GO

GO:0016021   GO:0006429   GO:0002161   GO:0005524   GO:0004823   GO:0071013   GO:0000398   GO:0071011   GO:0000381   GO:0032502   GO:0016607   GO:0003729   GO:1990904  

PANTHER

PTHR43740  

Length:

367

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01798

outside

1  -  367

 

 

Pi

280.791721

Theta

192.193073

Tajima's D

1.346489

CLR

0.274277

CSRT

0.755012249387531

Interpretation

Uncertain