Gene

KWMTBOMO02714  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003730

Annotation

PREDICTED:_survival_of_motor_neuron-related-splicing_factor_30_[Amyelois_transitella]

Location

Bomo_Chr5(-):9520894-9523240      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.964

CDS

ATGGCCGAAGATCTACGAAATTATACCTTACAATTGCAACAGGTGGAGGCAGCGTTATTAACGGATCCACATAACGAAGAACTTTTGAAGTTAAAGGCTGATTTAGAAGAAGTAATTGAATTGACACAAGATTTAATTAAGACTCAAGACGGTGATTCAAAAGTCTCTAATATTCATGGTTCTAGTAATAGTGATGATGTTACAGCGTCCCTGTTGGCTGCAGAGGAACGAGATCCTGCAACTAGGCACTATTCTAAATGGATTATTGGCGAAAAATGTTTGGCAAAATGGAGAGCTGATGGAATGTTTTATGAGGCTCTCATTGAGGAGGTGCTAGAAGACAATTTAAAAGTAAAATTTGATGGATACACAACCTTGGAAGTAGTCTCATTGACTGATATAAAGCCTTTAAATTCAGGAAGTAAAAGACCACATAGTACTGATGAGAGCAAACATGGCAAAGGGTATAACAGAGAGTATTTAAAGAAAAAAAAACAGAAGAAACAACAAAGATTCAAACAGATTGAAGAAGAACGAGAATCTGAGAAGAATAAGTGGTTATCATTTCATACTAAGGCTTCTAAAAAACCTGGTGTCAGAACAAAAAGTATATTTGCTTCTCCTGATAATCTGACAGGGAGAGTAGGAATTGGTACTTGTGGTATATCAGGTAAACCAATGACTGAGTATACACCTGGCGAAAAGTGGAAGAAAGGAGGATAA

Protein

MAEDLRNYTLQLQQVEAALLTDPHNEELLKLKADLEEVIELTQDLIKTQDGDSKVSNIHGSSNSDDVTASLLAAEERDPATRHYSKWIIGEKCLAKWRADGMFYEALIEEVLEDNLKVKFDGYTTLEVVSLTDIKPLNSGSKRPHSTDESKHGKGYNREYLKKKKQKKQQRFKQIEEERESEKNKWLSFHTKASKKPGVRTKSIFASPDNLTGRVGIGTCGISGKPMTEYTPGEKWKKGG

Uniprot

H9J2J3   A0A2A4JI56   A0A2H1X269   A0A194RHB7   A0A212FJ10   I4DJR4   + More
S4PNZ7   A0A0L7K3D1   A0A2J7PF23   A0A067RGM6   A0A1B0B3A8   A0A1A9VFS8   A0A1A9ZZ49   A0A1A9WYL5   B4NIY9   A0A0K8TNI3   A0A2P8Z750   A0A0A1X113   A0A0A1WJ62   A0A1I8MKM9   A0A0L0CMA3   A0A0K8U1H1   A0A1Q3F9P1   B0WCM1   A0A0M3QX67   A0A1W4WJS9   A0A1L8DH94   A0A034WVV8   A0A0C9S1I5   A0A2J7PF31   A0A182SPD5   B4MC81   A0A182PJW8   A0A3B0JS81   A0A0Q9WYA2   A0A182QCZ2   A0A182YPX6   A0A182WCJ7   A0A0R3NID1   A0A182RDF6   A0A182M2M4   A0A0Q9WK57   Q1HQQ7   A0A0Q9X5J7   A0A0P8XWL5   D6WV65   B4JYV2   W5JV66   A0A2M4BYQ1   A0A182KC78   A0A2M4AP25   W8ARY5   A0A182TT99   A0A2M3ZBF4   A0A023EN22   A0A1Y1JXC4   A0A182X8M2   A0A182UV81   A0A182LLH5   A0A182II84   A0A182IPL4   A0A2M4AP24   A0A0J9US11   A0A182G095   A0A0R3NI35   A0A0Q5U8E5   B5DWP2   U5EX11   Q7Q5R6   A0A1I8Q7T3   A0A232ENW6   K7IPN8   E2C369   A0A0M8ZPT7   A0A2A3EIK9   A0A182NH25   A0A088APY7   A0A0L7R8N5   E9JAB6   A0A1B6F7J1   A0A1B6K1X0   E2AN65   A0A0C9QIA0   A0A195FR13   A0A154NYD4   F4WC80   A0A195BKA3   A0A158N9Y6   A0A151WH77   A0A195EKI1   A0A026VV77   A0A0R1E196   A0A2R7WEX2   A0A0P4VM29   R4G8N6   A0A1B6KU99   R4WJI9   A0A0V0G9Z1   A0A069DXP7   Q95RI7  

Pubmed

19121390    26354079    22118469    22651552    23622113    26227816    + More
24845553    17994087    26369729    29403074    25830018    25315136    26108605    25348373    25244985    15632085    17204158    17510324    18362917    19820115    20920257    23761445    24495485    24945155    26483478    28004739    20966253    22936249    12364791    14747013    17210077    28648823    20075255    20798317    21282665    21719571    21347285    24508170    30249741    17550304    27129103    23691247    26334808    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

BABH01008021    NWSH01001393    PCG71398.1    ODYU01012814    SOQ59306.1    KQ460207    + More
KPJ16715.1    AGBW02008321    OWR53711.1    AK401532    KQ459597    BAM18154.1    KPI94832.1    GAIX01000532    JAA92028.1    JTDY01012363    KOB52286.1    NEVH01026085    PNF14936.1    KK852520    KDR22148.1    JXJN01007807    CH964272    EDW84891.1    GDAI01001679    JAI15924.1    PYGN01000166    PSN52325.1    GBXI01010004    JAD04288.1    GBXI01015864    JAC98427.1    JRES01000189    KNC33473.1    GDHF01031951    JAI20363.1    GFDL01010812    JAV24233.1    DS231889    EDS43672.1    CP012526    ALC45403.1    GFDF01008252    JAV05832.1    GAKP01000233    JAC58719.1    GBYB01014636    JAG84403.1    PNF14937.1    CH940657    EDW63163.1    OUUW01000007    SPP83272.1    CH933806    KRG00709.1    AXCN02000346    CM000070    KRT00604.1    AXCM01003359    KRF80933.1    DQ440387    CH477859    ABF18420.1    EAT35566.1    KRG00708.1    CH902618    KPU79117.1    KQ971363    EFA07776.1    CH916378    EDV98567.1    ADMH02000262    ETN67198.1    GGFJ01008910    MBW58051.1    GGFK01009210    MBW42531.1    GAMC01014950    JAB91605.1    GGFM01005049    MBW25800.1    JXUM01000444    GAPW01003844    GAPW01003843    JAC09754.1    GEZM01098701    JAV53793.1    APCN01000030    GGFK01009223    MBW42544.1    CM002911    CM002912    KMY91532.1    KMZ01326.1    KMZ01347.1    KRT00603.1    CH954178    KQS44460.1    EDY68184.2    GANO01000301    JAB59570.1    AAAB01008960    EAA11576.2    NNAY01003071    OXU20028.1    GL452292    EFN77601.1    KQ435922    KOX68625.1    KZ288232    PBC31538.1    KQ414632    KOC67131.1    GL770128    EFZ10241.1    GECZ01023624    JAS46145.1    GECU01002276    JAT05431.1    GL441088    EFN65129.1    GBYB01013844    GBYB01014460    GBYB01014473    JAG83611.1    JAG84227.1    JAG84240.1    KQ981305    KYN42866.1    KQ434782    KZC04572.1    GL888070    EGI68060.1    KQ976455    KYM85045.1    ADTU01009910    KQ983135    KYQ47191.1    KQ978739    KYN28748.1    KK107796    QOIP01000013    EZA47632.1    RLU15441.1    CM000159    KRK02542.1    KK854724    PTY18192.1    GDKW01001017    JAI55578.1    ACPB03009795    GAHY01000657    JAA76853.1    GEBQ01024951    JAT15026.1    AK417715    BAN20930.1    GECL01001130    JAP04994.1    GBGD01002760    JAC86129.1    AY061350    AE014296    AAL28898.1    ACL83356.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000007151    UP000053268    UP000037510    + More
UP000235965    UP000027135    UP000092460    UP000078200    UP000092445    UP000091820    UP000007798    UP000245037    UP000095301    UP000037069    UP000002320    UP000092553    UP000192223    UP000075901    UP000008792    UP000075885    UP000268350    UP000009192    UP000075886    UP000076408    UP000075920    UP000001819    UP000075900    UP000075883    UP000008820    UP000007801    UP000007266    UP000001070    UP000000673    UP000075881    UP000075902    UP000069940    UP000076407    UP000075903    UP000075882    UP000075840    UP000075880    UP000069272    UP000008711    UP000007062    UP000095300    UP000215335    UP000002358    UP000008237    UP000053105    UP000242457    UP000075884    UP000005203    UP000053825    UP000000311    UP000078541    UP000076502    UP000007755    UP000078540    UP000005205    UP000075809    UP000078492    UP000053097    UP000279307    UP000002282    UP000015103    UP000000803   

PRIDE

H9J2J3    Q95RI7   

Pfam

PF06003   SMN

Interpro

IPR002999   Tudor        + More
IPR010304   Survival_motor_neuron       

ProteinModelPortal

H9J2J3   A0A2A4JI56   A0A2H1X269   A0A194RHB7   A0A212FJ10   I4DJR4   + More
S4PNZ7   A0A0L7K3D1   A0A2J7PF23   A0A067RGM6   A0A1B0B3A8   A0A1A9VFS8   A0A1A9ZZ49   A0A1A9WYL5   B4NIY9   A0A0K8TNI3   A0A2P8Z750   A0A0A1X113   A0A0A1WJ62   A0A1I8MKM9   A0A0L0CMA3   A0A0K8U1H1   A0A1Q3F9P1   B0WCM1   A0A0M3QX67   A0A1W4WJS9   A0A1L8DH94   A0A034WVV8   A0A0C9S1I5   A0A2J7PF31   A0A182SPD5   B4MC81   A0A182PJW8   A0A3B0JS81   A0A0Q9WYA2   A0A182QCZ2   A0A182YPX6   A0A182WCJ7   A0A0R3NID1   A0A182RDF6   A0A182M2M4   A0A0Q9WK57   Q1HQQ7   A0A0Q9X5J7   A0A0P8XWL5   D6WV65   B4JYV2   W5JV66   A0A2M4BYQ1   A0A182KC78   A0A2M4AP25   W8ARY5   A0A182TT99   A0A2M3ZBF4   A0A023EN22   A0A1Y1JXC4   A0A182X8M2   A0A182UV81   A0A182LLH5   A0A182II84   A0A182IPL4   A0A2M4AP24   A0A0J9US11   A0A182G095   A0A0R3NI35   A0A0Q5U8E5   B5DWP2   U5EX11   Q7Q5R6   A0A1I8Q7T3   A0A232ENW6   K7IPN8   E2C369   A0A0M8ZPT7   A0A2A3EIK9   A0A182NH25   A0A088APY7   A0A0L7R8N5   E9JAB6   A0A1B6F7J1   A0A1B6K1X0   E2AN65   A0A0C9QIA0   A0A195FR13   A0A154NYD4   F4WC80   A0A195BKA3   A0A158N9Y6   A0A151WH77   A0A195EKI1   A0A026VV77   A0A0R1E196   A0A2R7WEX2   A0A0P4VM29   R4G8N6   A0A1B6KU99   R4WJI9   A0A0V0G9Z1   A0A069DXP7   Q95RI7  

PDB

4A4H     E-value=0.00895417,     Score=89

KEGG

101736899    K12839 survival of motor neuron-related-splicing factor 30 | (RefSeq) survival of motor neuron-relat

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0005634   GO:0005737   GO:0003723   GO:0006397   GO:0071011   GO:0000381   GO:0000398   GO:0006813   GO:0008076   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

Length:

240

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00098

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07554

outside

1  -  240

 

 

Pi

347.781627

Theta

225.717215

Tajima's D

1.702973

CLR

0

CSRT

0.829808509574521

Interpretation

Uncertain