Gene

KWMTBOMO02713

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr5(+):9464021-9467014      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon BS      

Alternative Name

Reverse transcriptase

Location in the cell

Nuclear   Reliability : 2.255

CDS

ATGCGTCCTTCTTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAGCTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCATCGGATGCGTTACCACCCGTCACCCCGATAGAAGTTAAAGACATGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACTGTATATCTAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCTCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGCAGGTTAGCTGTCGGGGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCAATTCGGAAATACATGAAGTCAGCGTCGGAACGATACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTTGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGATGCCTTCAGCTCTAATACTAGGGGCAGGCTTAGGGACCCCGGTAACCGTATTCGTCGAACTCGACAAAGAGGTCGACGTGCAACCTAA

Protein

MRPSSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVAMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPIEVKDMIKDLRPRKAPGSDCISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWLIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSNTRGRLRDPGNRIRRTRQRGRRAT

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon BS

Uniprot

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
V5GNJ2   A0A139WA11   V5GNF3   A0A139W8G9   A0A2S2PR14   J9KKL3   X1WLB2   A0A2S2Q352   A0A2S2QEE0   A0A2H8U0H5   A0A023EYS8   A0A3N5Z7I3   J9KCZ4   A0A224XF24   A0A2S2PPK8   A0A2J7R7D0   J9KC83   X1WNI2   Q07995   A0A1Y1LKN6   A0A2S2NGV8   A0A2S2N814   A0A023F6S4   A0A2S2RAN7   A0A023EZE6   A0A224XB44   A0A2J7R8R8   J9LC21   A0A0C9RJA4   A0A1Y1KFR3   A0A1Y1M7E9   A0A2M4BD67   A0A2M4BDV6   A0A2J7RS81   A0A2J7PDM0   J9M522   K7IN67   X1WZH0   A0A2J7PVX3   X1WN18   A0A2J7PQB5   A0A2S2R9D4   A0A1L8DIZ6   A0A2S2Q383   A0A2J7Q627   X1WTA1   A0A069DZC5   A0A069DW01   Q95SX7   A0A2S2PBB4   A0A224XIB0   A0A224XI99   J9LC15   A0A023F7D1   A0A224X6S1   A0A2J7Q059   A0A2J7QUJ9   A0A2J7RIW7   A0A224X6Q4   J9JS95   A0A2J7PMP6   A0A224X6U5   A0A2J7R4B7   A0A2J7RM10   A0A2J7Q4F7   A0A2H8TKI9   A0A2J7QB68   J9KPF1   A0A023F754   A0A1Y1KUU7   A0A2J7RB54   A0A2J7RPU2   A0A2S2NH02   A0A224X746   A0A2A4K918   A0A069DVA6  

EC Number

2.7.7.49

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
25474469    30086797    8387152    20075255    26334808    7753626    12537569   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    GALX01005359    JAB63107.1    KQ973342    KXZ75569.1    GGMR01019198    MBY31817.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02042518    ABLF02057746    GGMS01002955    MBY72158.1    GGMS01006359    MBY75562.1    GFXV01007093    MBW18898.1    GBBI01004395    JAC14317.1    RPOV01000134    RPJ78669.1    ABLF02008463    GFTR01008038    JAW08388.1    GGMR01018716    MBY31335.1    NEVH01006736    PNF36716.1    ABLF02033757    ABLF02008153    ABLF02008462    ABLF02008464    S59870    AAB26437.2    GEZM01053022    JAV74219.1    GGMR01003407    MBY16026.1    GGMR01000676    MBY13295.1    GBBI01001646    JAC17066.1    GGMS01017914    MBY87117.1    GBBI01004571    JAC14141.1    GFTR01008262    JAW08164.1    NEVH01006721    PNF37225.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GBYB01008290    JAG78057.1    GEZM01084969    JAV60363.1    GEZM01038405    JAV81653.1    GGFJ01001858    MBW50999.1    GGFJ01001857    MBW50998.1    NEVH01000269    PNF43694.1    NEVH01026386    PNF14434.1    ABLF02024246    ABLF02034467    NEVH01020940    PNF20481.1    ABLF02021177    ABLF02027367    ABLF02066338    NEVH01022639    PNF18527.1    GGMS01017365    MBY86568.1    GFDF01007661    JAV06423.1    GGMS01002992    MBY72195.1    NEVH01017542    PNF24034.1    ABLF02037660    GBGD01000880    JAC88009.1    GBGD01000799    JAC88090.1    AY060438    AAL25477.1    GGMR01014053    MBY26672.1    GFTR01008246    JAW08180.1    GFTR01008256    JAW08170.1    ABLF02020655    ABLF02039168    ABLF02061060    GBBI01001570    JAC17142.1    GFTR01008271    JAW08155.1    NEVH01020071    PNF21969.1    NEVH01010546    PNF32261.1    NEVH01003017    PNF40781.1    GFTR01008279    JAW08147.1    ABLF02028535    ABLF02028545    NEVH01023962    PNF17612.1    GFTR01008251    JAW08175.1    NEVH01007443    PNF35684.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01018383    PNF23463.1    GFXV01002840    MBW14645.1    NEVH01016302    PNF25823.1    ABLF02041767    GBBI01001642    JAC17070.1    GEZM01074951    JAV64378.1    NEVH01005938    PNF38077.1    NEVH01001355    PNF42855.1    GGMR01003864    MBY16483.1    GFTR01008151    JAW08275.1    NWSH01000032    PCG80496.1    GBGD01000881    JAC88008.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000235965    UP000002358    UP000218220    + More

PRIDE

Q93137    Q9XXW0    Q9BPQ0    Q95SX7   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
V5GNJ2   A0A139WA11   V5GNF3   A0A139W8G9   A0A2S2PR14   J9KKL3   X1WLB2   A0A2S2Q352   A0A2S2QEE0   A0A2H8U0H5   A0A023EYS8   A0A3N5Z7I3   J9KCZ4   A0A224XF24   A0A2S2PPK8   A0A2J7R7D0   J9KC83   X1WNI2   Q07995   A0A1Y1LKN6   A0A2S2NGV8   A0A2S2N814   A0A023F6S4   A0A2S2RAN7   A0A023EZE6   A0A224XB44   A0A2J7R8R8   J9LC21   A0A0C9RJA4   A0A1Y1KFR3   A0A1Y1M7E9   A0A2M4BD67   A0A2M4BDV6   A0A2J7RS81   A0A2J7PDM0   J9M522   K7IN67   X1WZH0   A0A2J7PVX3   X1WN18   A0A2J7PQB5   A0A2S2R9D4   A0A1L8DIZ6   A0A2S2Q383   A0A2J7Q627   X1WTA1   A0A069DZC5   A0A069DW01   Q95SX7   A0A2S2PBB4   A0A224XIB0   A0A224XI99   J9LC15   A0A023F7D1   A0A224X6S1   A0A2J7Q059   A0A2J7QUJ9   A0A2J7RIW7   A0A224X6Q4   J9JS95   A0A2J7PMP6   A0A224X6U5   A0A2J7R4B7   A0A2J7RM10   A0A2J7Q4F7   A0A2H8TKI9   A0A2J7QB68   J9KPF1   A0A023F754   A0A1Y1KUU7   A0A2J7RB54   A0A2J7RPU2   A0A2S2NH02   A0A224X746   A0A2A4K918   A0A069DVA6  

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0006313  

Length:

732

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.53775000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07366

outside

1  -  732

 

 

Pi

15.320893

Theta

35.553768

Tajima's D

0

CLR

36.71749

CSRT

0.375981200939953

Interpretation

Uncertain