Gene

KWMTBOMO02704  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003462

Annotation

splicing_factor_45_[Bombyx_mori]

Location

Bomo_Chr5(+):9247135-9252373      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.114

CDS

ATGCAACCTGAAGAGGAGGAAGCTGAGGAGATATCAAAGAGAGCTACTGGAGTTGCTATAGCTCCTCCACCTTCTCTGACTACAGAATCTTCATCACCACCCCCAATTAGTGCTCTACCGCAAGCAACCGCATCAGCTGGGTTCTCCATCGGTGGTTATGGCGCTAGTTCAGTAGCTGCAAAGATAATGGCAAAATATGGATTTAAGGAGGGTCAAGGGTTGGGTAAAAAAGAACAAGGAATGTCGGTGGCCTTGCAAGTCGAGAAGACTTCAAAACGCGGTGGTCGAATTATTCATGAGAAAGACAATAACGTGATGCCACCACCAGGCTTTACAATGCAAGCGCCCGCTGGACCAGATTCGCCAAATACATCATCTAATTCACCGCTTCTGTCAAGAAACGAGCCATCAATAACTGAAATAATGAAGACACCAAGCAAAGTTGTATTGCTTAGAAATATGGTTGGTCCAGGCGATGTTGACGAAGAACTAGAGCCCGAAGTCAAAGATGAATGCAACACAAAATATGGAGAAGTAGTCAAAGTGCTCATTTTTGAAATGCCGAATGTACCGTCAGATGAAGCAGTTAGAATATTTGTTGAATTCAAACGAATTGAAAGTGCTATTAAAGCAGTAGTTGATCTTAATGGACGTTTCTTCGGTGGGAGACAAGTTAAAGCTGGTTTCTATGACGTAGAAAAGTTTAATTCACTACAATTGATAGAATGA

Protein

MQPEEEEAEEISKRATGVAIAPPPSLTTESSSPPPISALPQATASAGFSIGGYGASSVAAKIMAKYGFKEGQGLGKKEQGMSVALQVEKTSKRGGRIIHEKDNNVMPPPGFTMQAPAGPDSPNTSSNSPLLSRNEPSITEIMKTPSKVVLLRNMVGPGDVDEELEPEVKDECNTKYGEVVKVLIFEMPNVPSDEAVRIFVEFKRIESAIKAVVDLNGRFFGGRQVKAGFYDVEKFNSLQLIE

Uniprot

Q0ZAL6   H9J1S5   Q1HPU9   S4PDV5   A0A212FBB6   A0A2A4K2Z2   + More
A0A2H1VNE7   A0A194RL53   A0A194PND2   I4DPG2   A0A067RPB4   A0A2J7RCF2   A0A1B0CYX6   A0A023ETZ2   A0A182GMC3   A0A1L8DGQ8   A0A1L8DHL0   A0A0T6AWR7   K7J3T1   A0A232FKS9   E0VQK5   A0A2M3ZJH2   A0A084W6N6   A0A1B0GL31   A0A1B6EVC4   A0A1Q3F2B0   A0A1B0FE95   A0A1B0C3U0   A0A1B6LHK4   A0A1B0AB74   A0A1Q3F2W6   Q172Z4   A0A2M4BP41   A0A2M4BN90   A0A182K491   A0A1A9UWT9   A0A182LZW1   W5JLY6   A0A182VUJ4   A0A182UCK7   A0A2M4AIV8   A0A182PVH8   A0A182YPA0   A0A182SPG4   A0A182F1H2   A0A2M4AJN6   U5EYX1   A0A1I8N0G8   A0A2S2P2M6   A0A2M4AJ87   B4MU65   B0X0A0   A0A026WXZ1   A0A182QMY1   Q7PVF2   A0A1S4H0R0   B3PAM2   J9JQ27   A0A1Y1KY64   A0A182TYT9   A0A182X0Q7   A0A182HGE3   A0A182L6H7   A0A182MZ17   A0A182JC99   A0A182V2H3   A0A182RAW9   B4GXC4   B5DK33   A0A2S2P0N8   A0A2H8TIQ4   A0A1I8NVH7   A0A3B0KNX2   J3JW24   A0A0R3NVB4   A0A1W4WGA0   A0A3B0JTU3   T1I7S9   A0A154PNW7   E9ICL1   B4IL32   A0A0J7KJ91   A0A0P8Y0M4   A0A2A3E7L1   A0A087ZV36   A0A0M8ZVE6   A0A0J9R5W4   B3MX16   E2A6P9   B4NSU3   A0A0L0CPJ3   Q6NL39   A0A0P4VNX4   Q7PL82   Q8SYI1   A0A2S2QIB5   Q7PL81   W8BWR4   Q7PL83  

Pubmed

19121390    23622113    22118469    26354079    22651552    24845553    + More
24945155    26483478    20075255    28648823    20566863    24438588    17510324    20920257    23761445    25244985    25315136    17994087    24508170    30249741    12364791    28004739    20966253    15632085    23185243    22516182    21282665    22936249    20798317    26108605    27129103    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485   

EMBL

DQ648523    ABG42998.1    BABH01008065    BABH01008066    DQ443303    ABF51392.1    + More
GAIX01003486    JAA89074.1    AGBW02009362    OWR51008.1    NWSH01000208    PCG78386.1    ODYU01003478    SOQ42328.1    KQ460207    KPJ16711.1    KQ459597    KPI94827.1    AK403583    BAM19802.1    KK852506    KDR22475.1    NEVH01005885    PNF38513.1    AJVK01020475    GAPW01001694    JAC11904.1    JXUM01074492    KQ562832    KXJ75046.1    GFDF01008544    JAV05540.1    GFDF01008244    JAV05840.1    LJIG01022672    KRT79325.1    NNAY01000066    OXU31351.1    DS235430    EEB15661.1    GGFM01007908    MBW28659.1    ATLV01020886    KE525309    KFB45880.1    AJWK01034109    GECZ01027887    JAS41882.1    GFDL01013351    JAV21694.1    CCAG010006184    JXJN01025104    GEBQ01016781    JAT23196.1    GFDL01013152    JAV21893.1    CH477429    EAT41085.1    GGFJ01005407    MBW54548.1    GGFJ01005406    MBW54547.1    AXCM01001007    ADMH02000672    ETN65377.1    GGFK01007399    MBW40720.1    GGFK01007675    MBW40996.1    GANO01000070    JAB59801.1    GGMR01010849    MBY23468.1    GGFK01007529    MBW40850.1    CH963852    EDW75654.1    DS232231    EDS37975.1    KK107072    QOIP01000007    EZA60678.1    RLU20499.1    AXCN02000792    AAAB01008984    EAA15153.4    CH954740    EDV45013.1    ABLF02024318    ABLF02024323    GEZM01075070    JAV64306.1    APCN01004219    CH479195    EDW27235.1    CH379061    EDY70659.1    KRT04937.1    GGMR01010341    MBY22960.1    GFXV01002200    MBW14005.1    OUUW01000010    SPP85538.1    BT127442    AEE62404.1    KRT04938.1    SPP85537.1    ACPB03023874    KQ435007    KZC13575.1    GL762325    EFZ21695.1    CH480863    EDW52853.1    LBMM01006579    KMQ90493.1    CH902628    KPU75319.1    KZ288348    PBC27494.1    KQ435830    KOX71737.1    CM002910    KMY91493.1    EDV34872.1    GL437183    EFN70889.1    CH982448    EDX15275.1    KMY91492.1    JRES01000198    KNC33349.1    BT012503    AAS93774.1    GDKW01000130    JAI56465.1    AE014134    EAA46009.2    AY071532    AAL49154.1    GGMS01008057    MBY77260.1    BT012461    AAS93732.1    EAA46010.2    GAMC01008859    GAMC01008857    JAB97696.1    DQ295864    BT044104    ABB99954.1    ACH92169.1    EAA46008.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053240    UP000053268    UP000027135    + More
UP000235965    UP000092462    UP000069940    UP000249989    UP000002358    UP000215335    UP000009046    UP000030765    UP000092461    UP000092444    UP000092460    UP000092445    UP000008820    UP000075881    UP000078200    UP000075883    UP000000673    UP000075920    UP000075902    UP000075885    UP000076408    UP000075901    UP000069272    UP000095301    UP000007798    UP000002320    UP000053097    UP000279307    UP000075886    UP000007062    UP000008711    UP000007819    UP000076407    UP000075840    UP000075882    UP000075884    UP000075880    UP000075903    UP000075900    UP000008744    UP000001819    UP000095300    UP000268350    UP000192223    UP000015103    UP000076502    UP000001292    UP000036403    UP000007801    UP000242457    UP000005203    UP000053105    UP000000311    UP000000304    UP000037069    UP000000803   

PRIDE

Q0ZAL6    H9J1S5    Q1HPU9    Q6NL39    Q7PL82    Q8SYI1    + More
Q7PL81    Q7PL83   

Pfam

PF00076   RRM_1        + More
PF01585   G-patch

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR035979   RBD_domain_sf       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

CDD

cd12647  RRM_UHM_SPF45

ProteinModelPortal

Q0ZAL6   H9J1S5   Q1HPU9   S4PDV5   A0A212FBB6   A0A2A4K2Z2   + More
A0A2H1VNE7   A0A194RL53   A0A194PND2   I4DPG2   A0A067RPB4   A0A2J7RCF2   A0A1B0CYX6   A0A023ETZ2   A0A182GMC3   A0A1L8DGQ8   A0A1L8DHL0   A0A0T6AWR7   K7J3T1   A0A232FKS9   E0VQK5   A0A2M3ZJH2   A0A084W6N6   A0A1B0GL31   A0A1B6EVC4   A0A1Q3F2B0   A0A1B0FE95   A0A1B0C3U0   A0A1B6LHK4   A0A1B0AB74   A0A1Q3F2W6   Q172Z4   A0A2M4BP41   A0A2M4BN90   A0A182K491   A0A1A9UWT9   A0A182LZW1   W5JLY6   A0A182VUJ4   A0A182UCK7   A0A2M4AIV8   A0A182PVH8   A0A182YPA0   A0A182SPG4   A0A182F1H2   A0A2M4AJN6   U5EYX1   A0A1I8N0G8   A0A2S2P2M6   A0A2M4AJ87   B4MU65   B0X0A0   A0A026WXZ1   A0A182QMY1   Q7PVF2   A0A1S4H0R0   B3PAM2   J9JQ27   A0A1Y1KY64   A0A182TYT9   A0A182X0Q7   A0A182HGE3   A0A182L6H7   A0A182MZ17   A0A182JC99   A0A182V2H3   A0A182RAW9   B4GXC4   B5DK33   A0A2S2P0N8   A0A2H8TIQ4   A0A1I8NVH7   A0A3B0KNX2   J3JW24   A0A0R3NVB4   A0A1W4WGA0   A0A3B0JTU3   T1I7S9   A0A154PNW7   E9ICL1   B4IL32   A0A0J7KJ91   A0A0P8Y0M4   A0A2A3E7L1   A0A087ZV36   A0A0M8ZVE6   A0A0J9R5W4   B3MX16   E2A6P9   B4NSU3   A0A0L0CPJ3   Q6NL39   A0A0P4VNX4   Q7PL82   Q8SYI1   A0A2S2QIB5   Q7PL81   W8BWR4   Q7PL83  

PDB

5LSO     E-value=1.92481e-32,     Score=345

KEGG

732979    K12840 splicing factor 45 | (RefSeq) Rbm17; RNA binding motif protein 17

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0043484   GO:0003723   GO:0006281   GO:0000380   GO:0000381   GO:0001745   GO:0000398   GO:0071011   GO:0003676   GO:0000166   GO:0016020   GO:0007264   GO:0005524   GO:0016459   GO:0006631   GO:0006635   GO:0048384  

PANTHER

PTHR13288  

Length:

242

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.52501

Exp number, first 60 AAs:

0.50915

Total prob of N-in:

0.02348

outside

1  -  242

 

 

Pi

285.858351

Theta

184.231481

Tajima's D

1.775961

CLR

0.021229

CSRT

0.840757962101895

Interpretation

Uncertain