Gene

KWMTBOMO02691  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003456

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_regulator_of_microtubule_dynamics_protein_1-like_[Amyelois_transitella]

Location

Bomo_Chr5(+):8952945-8954873      View in EpiBrowser

Full name

Regulator of microtubule dynamics protein 1      

Alternative Name

Protein FAM82B

Location in the cell

Mitochondrial   Reliability : 1.34 Nuclear   Reliability : 1.205

CDS

ATGTCAAGATATAAAAATTTATATCCAATCTTAACAAAAGTAATCTGCTTTTCAAGTGATTTGTTGAAACCAAATCGAATAAAAGTTGCGAGAGAGATCACACAGATACAATTTCCAAGAAACTTAATATTTATTTCTACCGGTTTAGCATTTTTGTGGCCCATCAAAAAGTCTAAAGAACCTATAGACCAAGAAAAATTGAAGAAACTATCTGTGATTGATGACTCTGATGAGCTGTTTGAAAACGGACATTATGAGGAATGCTATAATTTACTCAAAAATTATGAGGAAAACCAGGACATTGAAATTCAATGGCGTATCTGTCGTGCATTATACAACATGGCAAAAGAATCTAAGTATAACAATGCACAAAAAAAGGATTTCATATTTCAAGCATATGAGATAATTTGCAAGCACTTAAATAACAATGAAAACAATTTTGCAGTGCACAAATGGTATGCTCTAATTTTAGATGCAAAAAGCCATCACAATGGCATAAAAGAGAGAATTCAACAACTTGAGAATGTTAAAAAACATATGGATCTTGCAGTAACACTAAATCCCAATGATGCAACAACTTTACACATGCTGGGTGAATGGTGCTACCAAATAACTGAGATGCCGTGGCATCAAAGGAAGATAGCAGAAGTCTTGTTTGCATCCCCACCTCATTCAACATATGAGGATGCTTTAGAATATTTTCTTAGGGCTGAAACTATACAACCAAGATTTTACAGTGTCAATTTACTCAGATTGGGCATATGTTATCATAAACTGGGAAAAGAGGATCAAGCTAAATATTACTTAAAACTTGCAGCAAGTTACCCTGCAAAATCAAATGATGATCACTTAGCCAATAAAGAAGCTGCTGAATTGTTGAAGAAACTAAAATAG

Protein

MSRYKNLYPILTKVICFSSDLLKPNRIKVAREITQIQFPRNLIFISTGLAFLWPIKKSKEPIDQEKLKKLSVIDDSDELFENGHYEECYNLLKNYEENQDIEIQWRICRALYNMAKESKYNNAQKKDFIFQAYEIICKHLNNNENNFAVHKWYALILDAKSHHNGIKERIQQLENVKKHMDLAVTLNPNDATTLHMLGEWCYQITEMPWHQRKIAEVLFASPPHSTYEDALEYFLRAETIQPRFYSVNLLRLGICYHKLGKEDQAKYYLKLAASYPAKSNDDHLANKEAAELLKKLK

Subunit

Interacts with microtubules.

Similarity

Belongs to the RMDN family.

Keywords

Complete proteome   Cytoplasm   Cytoskeleton   Microtubule   Reference proteome   Repeat   TPR repeat   Alternative splicing   Polymorphism  

Feature

chain  Regulator of microtubule dynamics protein 1
splice variant  In isoform 2 and isoform 3.
sequence variant  In dbSNP:rs6980476.

Uniprot

H9J1R9   A0A1E1W5L8   A0A2A4JKU4   A0A2A4JMF6   A0A2H1W0V9   S4PFP6   + More
A0A212ESM9   A0A194RGX4   A0A194PNB7   A0A0L7KS41   A0A2J7RTH9   A0A0A9WMB0   A0A2J7RTG8   A0A0P4VPR6   A0A2J7RTF0   A0A154PJ20   A0A2R7WCY8   A0A1B6BYE1   A0A1B6KHQ3   A0A1B6LQ53   A0A224XVK6   K7IUK4   A0A232F3T7   E2A1N4   A0A0L7QTY1   A0A151X9H0   A0A1S3CY07   A0A310SIK4   A0A087ZZN7   A0A2A3ETH6   E9IFH9   A0A026W6V4   A0A1B6GKW1   A0A1U8BT04   E2C9J8   A0A2Y9J9X4   A0A195DR33   A0A195FD65   A0A2Y9QJ78   A0A2K5ISR2   W5JWY7   Q4G069   A0A340XK25   A0A151I667   A0A2Y9DA54   A0A2Y9QEX9   H0X673   A0A2M3Z601   D2H5C7   F4X8F7   A0A0G2K167   A0A3Q0DTP9   A0A2M3ZH91   A0A096MRL6   A0A2K5VN39   A0A2K5QB59   A0A1D5RC37   A0A2Y9J9X9   A0A2J8UFT9   A0A2J7RTE9   A0A2Y9JB35   A0A2I2YSM7   A0A2K6T524   G7PC60   F7EWT6   E0VH29   A0A0D9RKR1   G3STI4   A0A091CWP3   A0A2K6RCD5   W5PSA6   A0A2J8UFV6   H2PQQ9   A0A2K5KUQ9   A0A2K5YSX5   A0A2K6BFU0   G1QM72   A0A2J7RTF9   A0A2M4BV36   A0A1J1I7K1   L8J344   I3M5S5   A0A287AMF3   A0A3Q0DVC1   A0A286ZK35   A0A2M4BVI1   A0A2Y9JJ00   A0A2M4AB52   A0A2U3VGC8   A0A1S4F4L2   A0A2R8ZLX8   H2R289   Q96DB5   A0A1S3EU97   Q17FF3   G3RG99   A0A2I3S0I3   H9EX12   A0A2K6N0P4  

Pubmed

19121390    23622113    22118469    26354079    26227816    25401762    + More
26823975    27129103    20075255    28648823    20798317    21282665    24508170    30249741    20920257    23761445    15489334    20010809    21719571    15057822    17431167    22398555    22002653    25243066    20566863    25362486    20809919    22751099    30723633    22722832    16136131    10810093    14702039    16421571    18070910    21269460    25944712    17510324    25319552   

EMBL

BABH01008125    GDQN01008781    JAT82273.1    NWSH01001105    PCG72581.1    PCG72580.1    + More
ODYU01005650    SOQ46719.1    GAIX01003932    JAA88628.1    AGBW02012767    OWR44490.1    KQ460207    KPJ16694.1    KQ459597    KPI94812.1    JTDY01006541    KOB65910.1    NEVH01000004    PNF44116.1    GBHO01034027    GBRD01006144    GDHC01013483    JAG09577.1    JAG59677.1    JAQ05146.1    PNF44108.1    GDKW01002814    JAI53781.1    PNF44112.1    KQ434904    KZC11200.1    KK854563    PTY16910.1    GEDC01031234    JAS06064.1    GEBQ01029032    GEBQ01012003    JAT10945.1    JAT27974.1    GEBQ01014313    GEBQ01009963    JAT25664.1    JAT30014.1    GFTR01004283    JAW12143.1    AAZX01004215    NNAY01001089    OXU25179.1    GL435766    EFN72707.1    KQ414740    KOC62080.1    KQ982373    KYQ56974.1    KQ765379    OAD53944.1    KZ288191    PBC34449.1    GL762841    EFZ20655.1    KK107372    QOIP01000004    EZA51790.1    RLU23659.1    GECZ01006692    JAS63077.1    GL453868    EFN75337.1    KQ980581    KYN15306.1    KQ981673    KYN38326.1    ADMH02000120    ETN67689.1    BC098713    KQ978505    KYM93400.1    AAQR03011256    AAQR03011257    AAQR03011258    GGFM01003195    MBW23946.1    GL192501    EFB24169.1    GL888932    EGI57226.1    AABR07047478    GGFM01007165    MBW27916.1    AHZZ02033959    AQIA01068468    JSUE03041891    NDHI03003458    PNJ44142.1    PNF44104.1    CABD030059661    CM001283    EHH64281.1    GAMT01007274    GAMT01007273    GAMS01010439    GAMS01010438    GAMS01010437    GAMS01010436    GAMS01010435    GAMS01010434    GAMR01010787    GAMR01010786    GAMQ01000113    GAMP01010185    GAMP01010184    JAB04587.1    JAB12697.1    JAB23145.1    JAB41738.1    JAB42570.1    DS235157    EEB12685.1    AQIB01087657    KN123987    KFO22628.1    AMGL01113064    PNJ44146.1    ABGA01115724    ABGA01115725    ABGA01115726    ADFV01042788    PNF44114.1    GGFJ01007809    MBW56950.1    CVRI01000040    CRK94934.1    JH880404    ELR61832.1    AGTP01053766    AGTP01053767    AGTP01053768    AEMK02000022    DQIR01256411    HDC11889.1    DQIR01245842    DQIR01312488    HDC01320.1    GGFJ01007617    MBW56758.1    GGFK01004700    MBW38021.1    AJFE02072445    AACZ04067796    AACZ04067797    GABC01009724    GABC01009723    GABC01009722    GABF01010700    GABF01010699    GABD01001402    GABD01001401    GABE01010036    NBAG03000213    JAA01614.1    JAA11445.1    JAA31698.1    JAA34703.1    PNI84820.1    PNI84825.1    AF151848    AK297896    AK303122    AC103817    BC009671    BR000690    CH477271    EAT45292.1    JU323163    JU323165    JU472366    JV045485    AFE66921.1    AFH29170.1    AFI35556.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000037510    + More
UP000235965    UP000076502    UP000002358    UP000215335    UP000000311    UP000053825    UP000075809    UP000079169    UP000005203    UP000242457    UP000053097    UP000279307    UP000189706    UP000008237    UP000248482    UP000078492    UP000078541    UP000248480    UP000233080    UP000000673    UP000002494    UP000265300    UP000078542    UP000005225    UP000007755    UP000189704    UP000028761    UP000233100    UP000233040    UP000006718    UP000001519    UP000233220    UP000009130    UP000008225    UP000009046    UP000029965    UP000007646    UP000028990    UP000233200    UP000002356    UP000001595    UP000233060    UP000233140    UP000233120    UP000001073    UP000183832    UP000005215    UP000008227    UP000245340    UP000240080    UP000002277    UP000005640    UP000081671    UP000008820    UP000233180   

PRIDE

H9J1R9    Q4G069    Q96DB5   

Pfam

PF13181   TPR_8

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR013026   TPR-contain_dom       
IPR019734   TPR_repeat       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

H9J1R9   A0A1E1W5L8   A0A2A4JKU4   A0A2A4JMF6   A0A2H1W0V9   S4PFP6   + More
A0A212ESM9   A0A194RGX4   A0A194PNB7   A0A0L7KS41   A0A2J7RTH9   A0A0A9WMB0   A0A2J7RTG8   A0A0P4VPR6   A0A2J7RTF0   A0A154PJ20   A0A2R7WCY8   A0A1B6BYE1   A0A1B6KHQ3   A0A1B6LQ53   A0A224XVK6   K7IUK4   A0A232F3T7   E2A1N4   A0A0L7QTY1   A0A151X9H0   A0A1S3CY07   A0A310SIK4   A0A087ZZN7   A0A2A3ETH6   E9IFH9   A0A026W6V4   A0A1B6GKW1   A0A1U8BT04   E2C9J8   A0A2Y9J9X4   A0A195DR33   A0A195FD65   A0A2Y9QJ78   A0A2K5ISR2   W5JWY7   Q4G069   A0A340XK25   A0A151I667   A0A2Y9DA54   A0A2Y9QEX9   H0X673   A0A2M3Z601   D2H5C7   F4X8F7   A0A0G2K167   A0A3Q0DTP9   A0A2M3ZH91   A0A096MRL6   A0A2K5VN39   A0A2K5QB59   A0A1D5RC37   A0A2Y9J9X9   A0A2J8UFT9   A0A2J7RTE9   A0A2Y9JB35   A0A2I2YSM7   A0A2K6T524   G7PC60   F7EWT6   E0VH29   A0A0D9RKR1   G3STI4   A0A091CWP3   A0A2K6RCD5   W5PSA6   A0A2J8UFV6   H2PQQ9   A0A2K5KUQ9   A0A2K5YSX5   A0A2K6BFU0   G1QM72   A0A2J7RTF9   A0A2M4BV36   A0A1J1I7K1   L8J344   I3M5S5   A0A287AMF3   A0A3Q0DVC1   A0A286ZK35   A0A2M4BVI1   A0A2Y9JJ00   A0A2M4AB52   A0A2U3VGC8   A0A1S4F4L2   A0A2R8ZLX8   H2R289   Q96DB5   A0A1S3EU97   Q17FF3   G3RG99   A0A2I3S0I3   H9EX12   A0A2K6N0P4  

KEGG

101738989    no KO assigned | (RefSeq) regulator of microtubule dynamics protein 1-like

GO

GO:0005737   GO:0000922   GO:0005874   GO:0005515   GO:0051015   GO:0003774   GO:0005524   GO:0016459   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

Subcellular location

Cytoplasm   In interphase localizes in the cytoplasm, and during mitosis localizes to the spindle microtubules and spindle poles.   With evidence from 1 publications.
Cytoskeleton   In interphase localizes in the cytoplasm, and during mitosis localizes to the spindle microtubules and spindle poles.   With evidence from 1 publications.
Spindle   In interphase localizes in the cytoplasm, and during mitosis localizes to the spindle microtubules and spindle poles.   With evidence from 1 publications.
Spindle pole   In interphase localizes in the cytoplasm, and during mitosis localizes to the spindle microtubules and spindle poles.   With evidence from 1 publications.

Length:

297

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.57266

Exp number, first 60 AAs:

1.57139

Total prob of N-in:

0.13357

outside

1  -  297

 

 

Pi

233.699443

Theta

168.442002

Tajima's D

0.920691

CLR

0

CSRT

0.632868356582171

Interpretation

Uncertain