Gene

KWMTBOMO02668

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr5(-):8462881-8464063      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.153

CDS

ATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGTGGCGTGGTGCAAGAAAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCAAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGTTAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCGCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCACGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGGTCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAACGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA

Protein

MTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRGVVQERRSKLVSEVENSLGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLNGRQRLGSAPGIAEVHGRR

Uniprot

Q6UV17   Q5KTM5   A0A2H1VFZ3   A0A0P4VXU0   A0A3D5S1K1   A0A2H1WCG9   + More
J9GT67   T2M6M7   A0A1Y1S3P2   A0A1E1XGQ7   A0A131Y4I8   A0A147BU27   A0A131Y4Q4   A0A147BJQ0   A0A1E1XNL1   A0A1E1XN74   A0A147BNQ9   A0A1E1XNW6   A0A1E1X2T1   A0A131XQR9   A0A147BJ69   A0A090XE26   A0A131Y3E3   A0A131XRE4   A0A131XT39   A0A0P4VVV8   A0A1E1X2P5   A0A1G4M3N1   A0A2G8KET5   A0A147BQ97   A0A2B4RTL1   A0A0P4VTV9   A0A2H9T3F5   A0A1G4M5I2   A0A147BJZ1   A0A147BNC9   A0A147BLD9   A0A1E1XGC7   A0A2H9T4Y5   A0A0K8RPQ6   A0A1E1XPS6   A0A2I0UC10   A0A2H9T4F1   A0A1E1X2R3   A0A1E1XM20   A0A147BBR8   A0A147BB29   A0A2H9T4Q5   A0A2H9T5P0   A0A147BMA3   A0A1E1XVU2   W4ZGQ7   A0A1E1XN53   W4ZIH4   A0A147BI04   A0A147BPB7   A0A131XV56   V5H8T0   A0A147BKN8   A0A147BMF5   A0A147BRL4   A0A2S6A1F0   K7EXB4   W4Z0S9   K7EZ61   A0A2H9T2R7   K7EW64   A0A147BJE1   K7F115   A0A2H9T2Z5   A0A1E1WW75   K7F016   A0A2I0U3N1   K7EYW0   A0A147BLD0   A0A210QEX7   K7EWB0   K7F0H6   K7F012   K7EWE8   A0A2B4RFN8   A0A3M0JFD2   A0A147BL51   A0A147BK71   A0A131XTA8   K7F0V3   W4Z5Z2   A0A210QQ08   K7EX25  

Pubmed

30148503    23251564    24065732    28345194    28503490    29652888    + More
29209593    25970599    29023486    29150518    25765539    17381049    28812685   

EMBL

AY359886    AAQ57129.1    AB126052    BAD86652.1    ODYU01002162    SOQ39302.1    + More
GDRN01105059    JAI57791.1    DPOC01000269    HCX22453.1    ODYU01007423    SOQ50184.1    AMCI01002135    EJX03495.1    HAAD01001474    CDG67706.1    LWDP01000391    ORD92879.1    GFAC01000919    JAT98269.1    GEFM01002394    JAP73402.1    GEGO01001118    JAR94286.1    GEFM01002324    JAP73472.1    GEGO01004433    JAR90971.1    GFAA01002514    JAU00921.1    GFAA01002657    JAU00778.1    GEGO01003312    JAR92092.1    GFAA01002479    JAU00956.1    GFAC01005646    JAT93542.1    GEFM01006417    JAP69379.1    GEGO01004630    JAR90774.1    GBIH01002577    JAC92133.1    GEFM01002419    JAP73377.1    GEFM01005882    JAP69914.1    GEFM01006421    JAP69375.1    GDRN01111277    JAI56804.1    GFAC01005665    JAT93523.1    FLMD02000154    SCV66010.1    MRZV01000639    PIK46517.1    GEGO01002473    JAR92931.1    LSMT01000297    PFX20951.1    GDRN01111334    JAI56796.1    NSIT01000412    PJE77717.1    FLMD02000280    SCV66640.1    GEGO01004295    JAR91109.1    GEGO01003111    JAR92293.1    GEGO01003794    JAR91610.1    GFAC01000861    JAT98327.1    NSIT01000218    PJE78268.1    GADI01001229    JAA72579.1    GFAA01002385    JAU01050.1    KZ505886    PKU43598.1    NSIT01000271    PJE78081.1    GFAC01005670    JAT93518.1    GFAA01003161    JAU00274.1    GEGO01007187    JAR88217.1    GEGO01007438    JAR87966.1    NSIT01000239    PJE78188.1    NSIT01000164    PJE78524.1    GEGO01003518    JAR91886.1    GFAA01000066    JAU03369.1    AAGJ04096877    GFAA01002726    JAU00709.1    AAGJ04095885    GEGO01005479    JAR89925.1    GEGO01002794    JAR92610.1    GEFM01006250    JAP69546.1    GANP01010944    JAB73524.1    GEGO01004056    JAR91348.1    GEGO01003427    JAR91977.1    GEGO01002025    JAR93379.1    PSZC01000087    PPJ25136.1    AGCU01093320    AAGJ04088192    AGCU01081420    NSIT01000538    PJE77518.1    AGCU01055496    GEGO01004497    JAR90907.1    AGCU01164164    NSIT01000477    PJE77602.1    GFAC01007905    JAT91283.1    AGCU01148809    KZ506232    PKU40632.1    AGCU01046616    GEGO01004132    JAR91272.1    NEDP02004020    OWF47171.1    AGCU01168427    AGCU01096477    AGCU01135984    AGCU01003726    LSMT01000588    PFX15986.1    QRBI01000146    RMB99817.1    GEGO01003895    JAR91509.1    GEGO01004248    JAR91156.1    GEFM01005909    JAP69887.1    AGCU01111641    AAGJ04079835    NEDP02002425    OWF50811.1    AGCU01018596   

Proteomes

UP000230750    UP000225706    UP000007110    UP000239874    UP000007267    UP000242188    + More
UP000269221   

PRIDE

Q6UV17    Q5KTM5   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF08159   NUC153
PF03372   Exo_endo_phos
PF01425   Amidase

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036322   WD40_repeat_dom_sf       
IPR040382   NOL10/Enp2       
IPR012580   NUC153       
IPR001680   WD40_repeat       
IPR000120   Amidase       
IPR036928   AS_sf       
IPR023631   Amidase_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF50978   SSF50978       
SSF75304   SSF75304       

Gene 3D

3.60.10.10     3.90.1300.10    

ProteinModelPortal

Q6UV17   Q5KTM5   A0A2H1VFZ3   A0A0P4VXU0   A0A3D5S1K1   A0A2H1WCG9   + More
J9GT67   T2M6M7   A0A1Y1S3P2   A0A1E1XGQ7   A0A131Y4I8   A0A147BU27   A0A131Y4Q4   A0A147BJQ0   A0A1E1XNL1   A0A1E1XN74   A0A147BNQ9   A0A1E1XNW6   A0A1E1X2T1   A0A131XQR9   A0A147BJ69   A0A090XE26   A0A131Y3E3   A0A131XRE4   A0A131XT39   A0A0P4VVV8   A0A1E1X2P5   A0A1G4M3N1   A0A2G8KET5   A0A147BQ97   A0A2B4RTL1   A0A0P4VTV9   A0A2H9T3F5   A0A1G4M5I2   A0A147BJZ1   A0A147BNC9   A0A147BLD9   A0A1E1XGC7   A0A2H9T4Y5   A0A0K8RPQ6   A0A1E1XPS6   A0A2I0UC10   A0A2H9T4F1   A0A1E1X2R3   A0A1E1XM20   A0A147BBR8   A0A147BB29   A0A2H9T4Q5   A0A2H9T5P0   A0A147BMA3   A0A1E1XVU2   W4ZGQ7   A0A1E1XN53   W4ZIH4   A0A147BI04   A0A147BPB7   A0A131XV56   V5H8T0   A0A147BKN8   A0A147BMF5   A0A147BRL4   A0A2S6A1F0   K7EXB4   W4Z0S9   K7EZ61   A0A2H9T2R7   K7EW64   A0A147BJE1   K7F115   A0A2H9T2Z5   A0A1E1WW75   K7F016   A0A2I0U3N1   K7EYW0   A0A147BLD0   A0A210QEX7   K7EWB0   K7F0H6   K7F012   K7EWE8   A0A2B4RFN8   A0A3M0JFD2   A0A147BL51   A0A147BK71   A0A131XTA8   K7F0V3   W4Z5Z2   A0A210QQ08   K7EX25  

KEGG

105842661    no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964   GO:0004519   GO:0005634   GO:0016021   GO:0004040  

PANTHER

PTHR14927   PTHR11895  

Length:

329

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.7135

Exp number, first 60 AAs:

0.71344

Total prob of N-in:

0.04468

outside

1  -  329

 

 

Pi

145.499113

Theta

72.240282

Tajima's D

0.551275

CLR

0.619499

CSRT

0.534623268836558

Interpretation

Uncertain