SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02668
Annotation
endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.153
 

Sequence

CDS
ATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGTGGCGTGGTGCAAGAAAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCAAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGTTAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCGCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCACGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGGTCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAACGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA
Protein
MTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRGVVQERRSKLVSEVENSLGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLNGRQRLGSAPGIAEVHGRR

Summary

EMBL
AY359886    AAQ57129.1    AB126052    BAD86652.1    ODYU01002162    SOQ39302.1    + More
GDRN01105059    JAI57791.1    DPOC01000269    HCX22453.1    ODYU01007423    SOQ50184.1    AMCI01002135    EJX03495.1    HAAD01001474    CDG67706.1    LWDP01000391    ORD92879.1    GFAC01000919    JAT98269.1    GEFM01002394    JAP73402.1    GEGO01001118    JAR94286.1    GEFM01002324    JAP73472.1    GEGO01004433    JAR90971.1    GFAA01002514    JAU00921.1    GFAA01002657    JAU00778.1    GEGO01003312    JAR92092.1    GFAA01002479    JAU00956.1    GFAC01005646    JAT93542.1    GEFM01006417    JAP69379.1    GEGO01004630    JAR90774.1    GBIH01002577    JAC92133.1    GEFM01002419    JAP73377.1    GEFM01005882    JAP69914.1    GEFM01006421    JAP69375.1    GDRN01111277    JAI56804.1    GFAC01005665    JAT93523.1    FLMD02000154    SCV66010.1    MRZV01000639    PIK46517.1    GEGO01002473    JAR92931.1    LSMT01000297    PFX20951.1    GDRN01111334    JAI56796.1    NSIT01000412    PJE77717.1    FLMD02000280    SCV66640.1    GEGO01004295    JAR91109.1    GEGO01003111    JAR92293.1    GEGO01003794    JAR91610.1    GFAC01000861    JAT98327.1    NSIT01000218    PJE78268.1    GADI01001229    JAA72579.1    GFAA01002385    JAU01050.1    KZ505886    PKU43598.1    NSIT01000271    PJE78081.1    GFAC01005670    JAT93518.1    GFAA01003161    JAU00274.1    GEGO01007187    JAR88217.1    GEGO01007438    JAR87966.1    NSIT01000239    PJE78188.1    NSIT01000164    PJE78524.1    GEGO01003518    JAR91886.1    GFAA01000066    JAU03369.1    AAGJ04096877    GFAA01002726    JAU00709.1    AAGJ04095885    GEGO01005479    JAR89925.1    GEGO01002794    JAR92610.1    GEFM01006250    JAP69546.1    GANP01010944    JAB73524.1    GEGO01004056    JAR91348.1    GEGO01003427    JAR91977.1    GEGO01002025    JAR93379.1    PSZC01000087    PPJ25136.1    AGCU01093320    AAGJ04088192    AGCU01081420    NSIT01000538    PJE77518.1    AGCU01055496    GEGO01004497    JAR90907.1    AGCU01164164    NSIT01000477    PJE77602.1    GFAC01007905    JAT91283.1    AGCU01148809    KZ506232    PKU40632.1    AGCU01046616    GEGO01004132    JAR91272.1    NEDP02004020    OWF47171.1    AGCU01168427    AGCU01096477    AGCU01135984    AGCU01003726    LSMT01000588    PFX15986.1    QRBI01000146    RMB99817.1    GEGO01003895    JAR91509.1    GEGO01004248    JAR91156.1    GEFM01005909    JAP69887.1    AGCU01111641    AAGJ04079835    NEDP02002425    OWF50811.1    AGCU01018596   
Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF08159   NUC153
PF03372   Exo_endo_phos
PF01425   Amidase
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036322   WD40_repeat_dom_sf       
IPR040382   NOL10/Enp2       
IPR012580   NUC153       
IPR001680   WD40_repeat       
IPR000120   Amidase       
IPR036928   AS_sf       
IPR023631   Amidase_dom       
SUPFAM
SSF56219   SSF56219        + More
SSF50978   SSF50978       
SSF75304   SSF75304       
Gene 3D

Ontologies

Topology

Length:
329
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.7135
Exp number, first 60 AAs:
0.71344
Total prob of N-in:
0.04468
outside
1  -  329
 
 

Population Genetic Test Statistics

Pi
145.499113
Theta
72.240282
Tajima's D
0.551275
CLR
0.619499
CSRT
0.534623268836558
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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