SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02659
Pre Gene Modal
BGIBMGA003446
Annotation
PREDICTED:_integrator_complex_subunit_6-A_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 3.533
 

Sequence

CDS
ATGACTATAATTGTATTTTTAATAGATACATCTGCTTCTATGAATCAAAGAGCTTATTTGGGCGGACGCCCAACATTACTCGATGTAGCCAAGGGCGCCGTGGAAACGTTCGTAAAGGTGCGTCAACGTTCCCCCGAAAGCAGAGGCGACAGGTATATGCTTTTAACTTTCGAAGAGCCACCCGCGAACATCAAGGCTGGTTGGAAAGAGAATCTGGCTACATTTATAAATGAATTAAAAAATCTACAATGTTTGGGTCTTACAACTATGGGTGCTGCCTTGAAACATGCATTTGATGTTTTGAATATTAACCGTATGCAGACTGGCATTGACACATATGGCCAAGGCAGATGCCCTTTCTACCTTGAGCCATCAGTTATAGTAGTAATCACAGATGGTGGCAAATTGTCAAGCAATGCTGGCATTCAGGAAGAGTTCAACTTGCCCATGAATTGCCCTATTCCCGGATCGGAGTTAACCCGGGAACCGTTTCGGTGGGATCAGCGTCTGTTCTCCCTTGTTTTGAGACTGGCCGGCACTCCGGCCGTAGAACGGGACACCGGCCTCGTGCCCTCCGATACGTCACCAATAGACGCCATGTGCGAAGTTACCGGAGGTCGTTCATACTGCATCACGTCGCACCGTATGTTGATGCAGTGCATCGACAGCTTAGTGCAGAAAGTGCAGAGCGGCGTCGTTATCAACTTTGAGAAGATCGGACCGGATCCGCCTCCGATCGACGGCGCCGCCGGCCGAGACGACCAGGACGAGGTGAATCACGACACCGAAAAGGAAGTGGACGCCGACGCCGACAGAAACGGGCGTTGGAACGGTGGCTCGTATCAGACCAGCGCGAATCAGAACCAGAGTGGCGGCGCACCGCAGGCTTGGCACTCGTGTCGTCGACTCATCTACGTGCCGCGGACCGTCGCCCAGAAAGGTTTCGCTGTAGGCTTCTGGCCAATACCGGAGTCGTTCAGATCGGATCCTAATGCACCCACTCTGCCACCTCGTTCAGCTCATCCAGTTGTGAAGTTCACATGTTCAAGCCAGGAGCCCATGGTCATCGACAATCTTCCCTTTGATAAGTACGAACTCGAGCCCAGTCCGTTGACACAATTCATACTCGCCAGAAAGCAACCAACAATTTGTTGGCAGGTGTTCGTGGCAAATAGCGGGTGTAAAACCTCAGAAATGAATCAACCGTTTGGTTACTTAAAAGCGTCAACGAACTTAACTTGTGTGAATCTGTTCGTACTACCCTACAACTACCCGATGCTATTGCCGTTGCTCGACGATTTGTTCAAAGTACATCGCTGCAAACCCACGCCGGAGTGGAAAATGGCCTTCCAGCACTATTTGGATCGCATGCCGGCCTACTATGTTGCGCCTCTACGAAGAGCCTTAACGAAAATGGGAGCATCACCACAGCTGCTTCAGAGCATCATACCCGACACTCAGGATAATTCTCTGAGTTTTTCCGTTCTGAACTATTTGAAAAGACTGAAGAATCAAGCGAAGATCGAATTTGAAAAGCTCTGCGCTGATGTTATTAATAAAGCCAATAGTAACAATCAAAAAGGAGCTGAAAGTGTTCGAGTAATGCCACGGTCGCCTCTCAAGAAAGACCTCACGACCCACCCGTGCCTTCAAGATAAATTTTCCGCCTTACGTGATCAACTCAATGAGTTTGGCGGCTTCGTGGTAGGACTCTCGCGGGGTCGCCATAAAAGCGGAGCCCACACATACCGTAATCCATTCGACATACAACGGAGAGATCTGTTGGATCAAGTGGTCCGAATGCGAGCCAATTTCCTGCAGCCCTCTCTCGCTCACACTCGTCTGTTAGACGAAGACAGCGCGCACTCCATGCCGGTCGCGCAGATGGGCAACTACCAGGAGTATCTGAAGCGGATGACGCCGCAGCTACGAGAGATCGAATCTCAGCCAGTTCGACAGCACATGTTCGGGAATCCATTCAAGATTGACAAACGCATGATGGTAGACGAAGCGGACATCGACCCCGTGGGGGGCGCGGTGCGAGGCGGGGCGGGGGGCGGGGCGGGCGGCAAGCGCGGCTCCGACCTCCCGCGGGTCACCCCACCTAAACGCAAGGCGGGACCTCTCCCGCAGCACGTGGTGGCGCGTCGTCCCTCCTCGTCCCCAGCCCCGCCGCTGTCCCCGCCCGCGGTCCCCCTGTCCGTCTCCCCGCAGCCGGCGCCGCTCGCGATTAGACGTCCGACATCACCACTAACGCCTTTGCCATCCGACTTGCCATCGGGACGACCACCCGAGGAGCCTCCAAACTTGGACTCGGGCGGGTCGGTGTGCGCGGCGCCGTGTCCGCCCGCGCCCCCCCTCGCGCCGCCCGCCAACCTGCCGCCCGTCGTCAAACCATTCCTCAACGGCGACGCGTACAGTAGTCCGTGCAAGGCTCCGCGGTCGCCGTCCCCGCCCAACGAGACGCGTTTGGACTCGCAGGAACTTCAGATCAACGCGATCCTGCAGGGGCTCGCTGCTCAGAACGACGCTCAGAACTCACGAGCGAAGAAATGGAAACGAAAAAGCGAGAGATTGGCAGCCCAGCCGCCCGCAGTGCCTCAACCTTCGCGGAAGGAGTTAGCCGACATACGTCGACACAACCTCGACGTGAGGGCGCAGGTGTACCGCGCCGTTAGACGACCCGGAAGAGATTTCACTAAACTGTTTGAGCACTTAAAACAATTGCAAGGTACTGTGGACATTAAAAAGGAAGTGTTACGTGATGTGATTAACGAATCCTTAAGGTTTAAAAGGAAGGCTCTAGCGAAATTACTAGAAGACTTCTTGGCCGGATTAGAGAAGAACGGAAGCAGCGCTTCCGGTACGATCAAGCGTTTGAACAACAGTGCGGTTTACAACAGTGGTGCGAATCATAGCTAG
Protein
MTIIVFLIDTSASMNQRAYLGGRPTLLDVAKGAVETFVKVRQRSPESRGDRYMLLTFEEPPANIKAGWKENLATFINELKNLQCLGLTTMGAALKHAFDVLNINRMQTGIDTYGQGRCPFYLEPSVIVVITDGGKLSSNAGIQEEFNLPMNCPIPGSELTREPFRWDQRLFSLVLRLAGTPAVERDTGLVPSDTSPIDAMCEVTGGRSYCITSHRMLMQCIDSLVQKVQSGVVINFEKIGPDPPPIDGAAGRDDQDEVNHDTEKEVDADADRNGRWNGGSYQTSANQNQSGGAPQAWHSCRRLIYVPRTVAQKGFAVGFWPIPESFRSDPNAPTLPPRSAHPVVKFTCSSQEPMVIDNLPFDKYELEPSPLTQFILARKQPTICWQVFVANSGCKTSEMNQPFGYLKASTNLTCVNLFVLPYNYPMLLPLLDDLFKVHRCKPTPEWKMAFQHYLDRMPAYYVAPLRRALTKMGASPQLLQSIIPDTQDNSLSFSVLNYLKRLKNQAKIEFEKLCADVINKANSNNQKGAESVRVMPRSPLKKDLTTHPCLQDKFSALRDQLNEFGGFVVGLSRGRHKSGAHTYRNPFDIQRRDLLDQVVRMRANFLQPSLAHTRLLDEDSAHSMPVAQMGNYQEYLKRMTPQLREIESQPVRQHMFGNPFKIDKRMMVDEADIDPVGGAVRGGAGGGAGGKRGSDLPRVTPPKRKAGPLPQHVVARRPSSSPAPPLSPPAVPLSVSPQPAPLAIRRPTSPLTPLPSDLPSGRPPEEPPNLDSGGSVCAAPCPPAPPLAPPANLPPVVKPFLNGDAYSSPCKAPRSPSPPNETRLDSQELQINAILQGLAAQNDAQNSRAKKWKRKSERLAAQPPAVPQPSRKELADIRRHNLDVRAQVYRAVRRPGRDFTKLFEHLKQLQGTVDIKKEVLRDVINESLRFKRKALAKLLEDFLAGLEKNGSSASGTIKRLNNSAVYNSGANHS

Summary

EMBL
BABH01008184    BABH01008185    BABH01008186    AGBW02010519    OWR48355.1    KQ460207    + More
KPJ16670.1    KQ459597    KPI94788.1    JTDY01000647    KOB76349.1    KZ288282    PBC29577.1    NEVH01009398    PNF33141.1    KK852554    KDR21465.1    KQ414584    KOC70626.1    QOIP01000005    RLU22529.1    KQ434826    KZC07415.1    KQ981625    KYN39048.1    ADTU01015147    ADTU01015148    GL888480    EGI60248.1    GL764074    EFZ18638.1    GL446831    EFN87194.1    GL438491    EFN68915.1    GBYB01014392    JAG84159.1    ODYU01006551    SOQ48493.1    KQ982339    KYQ57356.1    KQ978053    KYM97765.1    GFTR01008439    JAW07987.1    GBBI01003112    JAC15600.1    GECU01034812    JAS72894.1    KQ976574    KYM80312.1    AAZX01002634    KQ435726    KOX78227.1    NNAY01000641    OXU27244.1    PYGN01000957    PSN38922.1    GDIP01052394    JAM51321.1    GDIQ01252135    JAJ99589.1    GDIP01066581    JAM37134.1    GDIP01083633    GDIQ01010655    JAM20082.1    JAN84082.1    GDIQ01049161    JAN45576.1    GDIQ01096926    JAL54800.1    GDIQ01152266    JAK99459.1    GDIQ01078230    JAN16507.1    GDIP01101531    JAM02184.1    GDIP01192072    JAJ31330.1    GDIQ01152264    JAK99461.1    GDIQ01224641    JAK27084.1    GDIP01101529    JAM02186.1    GDIP01083632    JAM20083.1    GDIP01216217    GDIP01192070    GDIQ01208044    GDIQ01172648    GDIQ01106231    GDIP01101491    LRGB01001728    JAJ31332.1    JAK43681.1    KZS10731.1    GDIP01216218    GDIP01192071    GDIQ01066945    JAJ07184.1    JAN27792.1    GDIQ01235533    JAK16192.1    GDIQ01080187    JAN14550.1    GDIQ01265521    JAJ86203.1    GDIQ01128529    JAL23197.1    GDIP01220875    JAJ02527.1    GDIQ01233182    JAK18543.1    GDIQ01098583    JAL53143.1    GDIP01197369    JAJ26033.1    GDIQ01127180    JAL24546.1    GDIP01201471    JAJ21931.1    GDIQ01196791    JAK54934.1    GDIQ01050560    JAN44177.1    GDIQ01265869    JAJ85855.1    GDIP01201472    JAJ21930.1    GDIP01189614    JAJ33788.1    GDIQ01265868    JAJ85856.1    GDIP01079284    JAM24431.1    GDIP01189616    JAJ33786.1    GDIP01122293    GDIQ01043846    JAL81421.1    JAN50891.1    GDIP01107035    JAL96679.1    GDIQ01106232    JAL45494.1    GDIP01104443    JAL99271.1    GDIP01107033    JAL96681.1    GDIP01104441    JAL99273.1    GDIP01107034    JAL96680.1    GDIP01104442    JAL99272.1    GDIP01223109    JAJ00293.1    GDIP01114935    JAL88779.1    GDIP01214109    JAJ09293.1    GDIP01075035    JAM28680.1    KQ971338    EFA02055.1    GFXV01002820    MBW14625.1    ABLF02040117    GGMR01007085    MBY19704.1    GDIP01063938    JAM39777.1    GDIP01063939    JAM39776.1    JH431901    GL732591    EFX73352.1    KB631697    ERL85445.1    GDIP01189615    JAJ33787.1   
Pfam
PF15300   INT_SG_DDX_CT_C        + More
PF13519   VWA_2
Interpro
IPR029307   INT_SG_DDX_CT_C        + More
IPR002035   VWF_A       
IPR036465   vWFA_dom_sf       
SUPFAM
SSF53300   SSF53300       
Gene 3D

Ontologies

Topology

Length:
973
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01142
Exp number, first 60 AAs:
0.00115
Total prob of N-in:
0.00053
outside
1  -  973
 
 

Population Genetic Test Statistics

Pi
260.40174
Theta
189.133289
Tajima's D
1.162423
CLR
0.048014
CSRT
0.696115194240288
Interpretation
Uncertain
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