Gene

KWMTBOMO02657

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr5(+):8091149-8092469      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.202 Nuclear   Reliability : 1.4

CDS

ATGGTCAGGAACGACAGGCTCTCTGCTCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCACTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGCATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATTAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATAATCTCGCCTTCGATATCGTCGCTCCGCTAATCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACTACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTACCGTTTAGCCCGGACTCTACCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCTCGTAG

Protein

MVRNDRLSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDNLAFDIVAPLIPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDYRPVVMKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFSPDSTPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPS

Uniprot

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A1B6MIM7   A0A2S2QV22   A0A1B6MLS9   X1WQI9   U4UGQ8   A0A139W8G9   A0A023EYS8   K7IN67   X1WK15   X1WNI2   J9LC21   J9KRU7   A0A087THU2   A0A2S2P6H1   A0A2S2NJB5   A0A2S2QEE0   J9LVT4   A0A1Y1MZU1   V5GNJ2   A0A2S2PPK8   A0A1Y1K0C8   J9LR29   A0A0L7KVB3   A0A2S2QQB9   J9LHE0   A0A087U3K8   T1ID59   A0A069DZL8   A0A2S2PJ52   X1WVL6   X1X0M4   A0A087T3W0   J9LPH9   A0A0L7L9V8   A0A087UGF5   A0A182FPZ5   A0A224X6Q4   A0A0J7K0R9   A0A224XB44   A0A0L7K4J3   A0A2J7PP17   J9MAR0   T1ICH1   J9LNE5   J9LFC9   J9KKL6   A0A2S2N960   A0A2G3AQH2   A0A2S2PJG2   T1I054   A0A2M4AQV0   A0A2M4AQK3   A0A139WA11   X1WLB2   A0A2S2QDN9   A0A2S2PXP8   A0A2S2N6Q7   A0A0J7K503   J9MAC6   A0A087UCW3   A0A2M4CV42   X1WX08   A0A2S2PXP7   A0A2S2P6S3   A0A224X6T4   A0A224X6W2   A0A1B6C2V8   A0A023EZE6  

Pubmed

10333566    26354079    10380107    28004739    23537049    18362917    + More
19820115    25474469    20075255    26227816    26334808    29089032   

EMBL

U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GEBQ01004157    JAT35820.1    GGMS01012398    MBY81601.1    GEBQ01003077    JAT36900.1    ABLF02022418    KB632143    ERL89075.1    KQ973342    KXZ75569.1    GBBI01004395    JAC14317.1    ABLF02012584    ABLF02013765    ABLF02024884    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02010814    ABLF02010815    ABLF02037860    ABLF02037869    KK115285    KFM64681.1    GGMR01012189    MBY24808.1    GGMR01004661    MBY17280.1    GGMS01006359    MBY75562.1    ABLF02003241    ABLF02003242    ABLF02025904    GEZM01021868    JAV88847.1    GALX01005299    JAB63167.1    GGMR01018716    MBY31335.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    ABLF02025082    ABLF02039175    ABLF02041809    JTDY01005246    KOB67202.1    GGMS01010725    MBY79928.1    ABLF02014934    ABLF02014939    ABLF02017810    KK118005    KFM71947.1    ACPB03027378    GBGD01000415    JAC88474.1    GGMR01016297    MBY28916.1    ABLF02042385    ABLF02065839    KK113281    KFM59799.1    ABLF02009591    ABLF02009592    ABLF02009594    ABLF02066703    JTDY01002082    KOB72150.1    KK119692    KFM76444.1    GFTR01008279    JAW08147.1    LBMM01018021    KMQ83899.1    GFTR01008262    JAW08164.1    JTDY01011738    KOB53653.1    NEVH01023280    PNF18085.1    ABLF02037715    ACPB03022356    ABLF02001804    ABLF02035179    ABLF02062794    ABLF02023911    ABLF02015631    ABLF02021986    ABLF02021987    ABLF02021991    GGMR01001088    MBY13707.1    MCIT02004487    PHT96476.1    GGMR01016905    MBY29524.1    ACPB03000870    GGFK01009846    MBW43167.1    GGFK01009732    MBW43053.1    KQ971729    KYB24751.1    ABLF02042518    ABLF02057746    GGMS01006655    MBY75858.1    GGMS01001094    MBY70297.1    GGMR01000226    MBY12845.1    LBMM01014024    KMQ85369.1    ABLF02007779    ABLF02007782    ABLF02050375    KK119261    KFM75202.1    GGFL01005012    MBW69190.1    ABLF02043963    GGMS01000479    MBY69682.1    GGMR01012443    MBY25062.1    GFTR01008261    JAW08165.1    GFTR01008260    JAW08166.1    GEDC01029594    JAS07704.1    GBBI01004571    JAC14141.1   

Proteomes

UP000053268    UP000007819    UP000030742    UP000007266    UP000002358    UP000054359    + More
UP000037510    UP000015103    UP000069272    UP000036403    UP000235965    UP000224522   

PRIDE

Q93137    Q9BPQ0    Q9XXW0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF14291   DUF4371
PF05699   Dimer_Tnp_hAT
PF07727   RVT_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR025398   DUF4371       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
IPR006580   Znf_TTF       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A1B6MIM7   A0A2S2QV22   A0A1B6MLS9   X1WQI9   U4UGQ8   A0A139W8G9   A0A023EYS8   K7IN67   X1WK15   X1WNI2   J9LC21   J9KRU7   A0A087THU2   A0A2S2P6H1   A0A2S2NJB5   A0A2S2QEE0   J9LVT4   A0A1Y1MZU1   V5GNJ2   A0A2S2PPK8   A0A1Y1K0C8   J9LR29   A0A0L7KVB3   A0A2S2QQB9   J9LHE0   A0A087U3K8   T1ID59   A0A069DZL8   A0A2S2PJ52   X1WVL6   X1X0M4   A0A087T3W0   J9LPH9   A0A0L7L9V8   A0A087UGF5   A0A182FPZ5   A0A224X6Q4   A0A0J7K0R9   A0A224XB44   A0A0L7K4J3   A0A2J7PP17   J9MAR0   T1ICH1   J9LNE5   J9LFC9   J9KKL6   A0A2S2N960   A0A2G3AQH2   A0A2S2PJG2   T1I054   A0A2M4AQV0   A0A2M4AQK3   A0A139WA11   X1WLB2   A0A2S2QDN9   A0A2S2PXP8   A0A2S2N6Q7   A0A0J7K503   J9MAC6   A0A087UCW3   A0A2M4CV42   X1WX08   A0A2S2PXP7   A0A2S2P6S3   A0A224X6T4   A0A224X6W2   A0A1B6C2V8   A0A023EZE6  

KEGG

NA   

GO

GO:0003964   GO:0004519   GO:0016021   GO:0046983  

Length:

324

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.09677

Exp number, first 60 AAs:

0.0539

Total prob of N-in:

0.07763

outside

1  -  324

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

321.518714

CSRT

0

Interpretation

Uncertain