Gene

KWMTBOMO02652

Pre Gene Modal

BGIBMGA003752

Annotation

PREDICTED:_rab11_family-interacting_protein_1_[Bombyx_mori]

Location

Bomo_Chr5(-):7946223-7948458      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.056

CDS

ATGTGGGACCCTACTCACGTTCAAGTGACCGTACAAAAAGCTCGTGGACTACTAATCAAAGGGAAAAACGGTACAAATAACTGTTTTGTTACCATTGCCCTCGGTAAAGAAAAATTCCAAACTTCCGTTAAACATAAAGCCACACAGAATGTGGAATGGTTAGAAGAATGCGAACTACCAATACCTACTCAAGGAAACACCGCTGAAGTTGTACTTAAAGTTTATGACGAAGATTTTGTTAAAGATCATTTATTGGGTCAAGTATCGATTCCGTTAAAAGACCTCGATGTATACGAGCGGCCAAGAAACCGCTGGTACAAGCTGCAGGGTAAATCAGGCAAAGAAAATGACAAGGACAGAGGTGAAATAGAAGTCAAAATAGCCTTCACAGTGAAGGAAGGCAGCCTCACGGATCTCAGCAAGAAAGACAAGCACCGATCCTCCTTATCCAGCCTGGCACAAAATGTTGGTGGAAGCCTCATGAGCATTGGCAGTATTGAAAAACGTAAAAGTTTAAAAAAATTTGCCAAAAATATTAGCTCTAAAATGAATTTAAACAATAAAAAAGATAAGAAAAATGACTCATCATCGATAAGTGGCAGTGTTGGAAATCTAAAAGGTGCTACCTTACCTTCTCCAATCCACTCAACACCTAAAAGATTATCAGGAGAAGCTGACCCTGGTGTCATAAGTGAAGATGATGATGAATTCGCTTTTGATGATTTGTCACACAAAAGTTCAGGCAGTTCACTTAATGTCCAAGCAAGCTATGCACCCAGAAGTTTCAAATATACACCATCACCTGTAAATGCATCTTTAGAAAATTTAGGTGGAGGAGAATTTTTAAGAAGATCTACAAGTAGCACCTTAGCTGTTCCAGAAAAAAGTATTCCACAAAAACCTGTTCGATTGAGCTTGGACACATTCACTCCACCACAATTACCTACTCCAGTTATGGATTCAAATGATGAATGGTCTCAAAAGTTGCTTCCGAGAAAATCTATGAGTCAATTGGCTATAGATAGAGAGAAATCTTCAAGCCTTGAAAGAAACAAGAAATTAGACAGTCCAAGTTCCTTAAAAGAAAAGCCTAGTCCTAAATTCTTTAAGAAGTTTGTTGGTAGCAGTAAACCAAAAAAATTACTTGAAGAAAGGATTATAGTTGGTGAAGAAAATATTGTTGAGGAAGACTATGTAAATCCTCTGTATCATAACATTCCCAAAACAGTATTGCAACAGTTTGAAGGAAAGACACGAGAAGATTTAATTGTCATGATTTACAATTTGCAAAAAGATGCAGAATTGGAGAAAAAGAAAACGAAAGACTTGGAAAACTATTTGGATGAACTACTCTTAAGAGTAATGGAAACAACACCCCGCATACTCCAGAATCCCTATAAATTAAGGTGTGAAATACGTAAATAA

Protein

MWDPTHVQVTVQKARGLLIKGKNGTNNCFVTIALGKEKFQTSVKHKATQNVEWLEECELPIPTQGNTAEVVLKVYDEDFVKDHLLGQVSIPLKDLDVYERPRNRWYKLQGKSGKENDKDRGEIEVKIAFTVKEGSLTDLSKKDKHRSSLSSLAQNVGGSLMSIGSIEKRKSLKKFAKNISSKMNLNNKKDKKNDSSSISGSVGNLKGATLPSPIHSTPKRLSGEADPGVISEDDDEFAFDDLSHKSSGSSLNVQASYAPRSFKYTPSPVNASLENLGGGEFLRRSTSSTLAVPEKSIPQKPVRLSLDTFTPPQLPTPVMDSNDEWSQKLLPRKSMSQLAIDREKSSSLERNKKLDSPSSLKEKPSPKFFKKFVGSSKPKKLLEERIIVGEENIVEEDYVNPLYHNIPKTVLQQFEGKTREDLIVMIYNLQKDAELEKKKTKDLENYLDELLLRVMETTPRILQNPYKLRCEIRK

Uniprot

A0A194RFS1   A0A194PP75   A0A212FAC0   A0A2A4K6H6   A0A2W1BIN4   A0A0L7LJ56   + More
A0A2H1WBY4   A0A1E1W8S5   A0A0A9W3S2   A0A182GAD6   A0A2J7R0X2   A0A2J7Q0T6   A0A1Q3F4F7   A0A1Q3F4F9   A0A1Q3F4F2   A0A1Q3F4L0   A0A067R4T6   A0A1Q3F493   A0A026WA80   A0A1Q3F4I9   A0A1B0CSY6   A0A1L8DN61   A0A1L8DN93   E2ARS5   A0A158P2G3   A0A0K8TMX5   A0A0J7NT66   A0A0C9S180   A0A0P5RPN5   A0A0P5VB73   A0A1S4EEB7   B4L3B3   A0A0Q9WMJ8   A0A0P5ZLC7   D6W718   A0A0P5VH32   A0A0P5LMU3   A0A0P5U405   A0A0P5HZA7   A0A0P5HLS7   A0A0P5MCQ1  

Pubmed

26354079    22118469    28756777    26227816    25401762    26483478    + More
24845553    24508170    30249741    20798317    21347285    26369729    17994087    18362917    19820115   

EMBL

KQ460207    KPJ16663.1    KQ459597    KPI94783.1    AGBW02009501    OWR50677.1    + More
NWSH01000078    PCG79841.1    KZ150098    PZC73565.1    JTDY01000927    KOB75404.1    ODYU01007628    SOQ50570.1    GDQN01007652    JAT83402.1    GBHO01040517    GBRD01010214    JAG03087.1    JAG55610.1    JXUM01008864    JXUM01008865    JXUM01008866    JXUM01008867    JXUM01008868    KQ560270    KXJ83422.1    NEVH01008217    PNF34475.1    NEVH01019962    PNF22191.1    GFDL01012632    JAV22413.1    GFDL01012601    JAV22444.1    GFDL01012603    JAV22442.1    GFDL01012578    JAV22467.1    KK852980    KDR13011.1    GFDL01012665    JAV22380.1    KK107302    QOIP01000012    EZA52955.1    RLU16210.1    GFDL01012647    JAV22398.1    AJWK01026782    GFDF01006192    JAV07892.1    GFDF01006193    JAV07891.1    GL442170    EFN63843.1    ADTU01000084    ADTU01000085    GDAI01001904    JAI15699.1    LBMM01001893    KMQ95595.1    GBYB01014501    JAG84268.1    GDIQ01099279    JAL52447.1    GDIP01104622    JAL99092.1    CH933810    EDW07041.1    KRF93919.1    GDIP01042731    JAM60984.1    KQ971307    EFA11427.2    GDIP01101678    JAM02037.1    GDIQ01171197    JAK80528.1    GDIP01120226    JAL83488.1    GDIQ01220188    JAK31537.1    GDIQ01227680    JAK24045.1    GDIQ01157458    JAK94267.1   

Proteomes

UP000053240    UP000053268    UP000007151    UP000218220    UP000037510    UP000069940    + More
UP000249989    UP000235965    UP000027135    UP000053097    UP000279307    UP000092461    UP000000311    UP000005205    UP000036403    UP000079169    UP000009192    UP000007266   

Pfam

PF09457   RBD-FIP        + More
PF00168   C2

Interpro

IPR037789   FIP_classI        + More
IPR035892   C2_domain_sf       
IPR037245   FIP-RBD_C_sf       
IPR000008   C2_dom       
IPR019018   Rab-bd_FIP-RBD       

SUPFAM

SSF144270   SSF144270       

Gene 3D

2.60.40.150    

ProteinModelPortal

A0A194RFS1   A0A194PP75   A0A212FAC0   A0A2A4K6H6   A0A2W1BIN4   A0A0L7LJ56   + More
A0A2H1WBY4   A0A1E1W8S5   A0A0A9W3S2   A0A182GAD6   A0A2J7R0X2   A0A2J7Q0T6   A0A1Q3F4F7   A0A1Q3F4F9   A0A1Q3F4F2   A0A1Q3F4L0   A0A067R4T6   A0A1Q3F493   A0A026WA80   A0A1Q3F4I9   A0A1B0CSY6   A0A1L8DN61   A0A1L8DN93   E2ARS5   A0A158P2G3   A0A0K8TMX5   A0A0J7NT66   A0A0C9S180   A0A0P5RPN5   A0A0P5VB73   A0A1S4EEB7   B4L3B3   A0A0Q9WMJ8   A0A0P5ZLC7   D6W718   A0A0P5VH32   A0A0P5LMU3   A0A0P5U405   A0A0P5HZA7   A0A0P5HLS7   A0A0P5MCQ1  

PDB

4C4P     E-value=0.0238348,     Score=89

KEGG

101743041    K12484 Rab11 family-interacting protein 1/2/5 | (RefSeq) rab11 family-interacting protein 1

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0017137   GO:0016301   GO:0042052   GO:0045055   GO:0043231   GO:0005515   GO:0016051   GO:0008270   GO:0016021   GO:0006812   GO:0015299   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

PANTHER

PTHR15746  

Length:

474

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01299

Exp number, first 60 AAs:

0.00197

Total prob of N-in:

0.00872

outside

1  -  474

 

 

Pi

300.788061

Theta

227.29254

Tajima's D

1.007654

CLR

0.013827

CSRT

0.664316784160792

Interpretation

Uncertain