SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02648  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA002649
Annotation
PREDICTED:_cullin-associated_NEDD8-dissociated_protein_1_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.377 Nuclear   Reliability : 1.159
 

Sequence

CDS
ATGGCTAATGTGTCTTACCATATAGCACATCTTCTTGAGAAGATGACATCCAATGATAAAGACTTCAGGTTTATGGCTACTAATGATTTGATGACAGAGTTGCAAAAAGACAGTATCAAGCTCGACGATGATTCTGAAAGAAAAGTAGTAAAAATGCTTCTACGATTACTCGAAGACAAGAATGGTGAAGTTCAGAATTTAGCTGTGAAATGCCTCGGTCCTCTTGTAAACAAAGTAAAGGAGTATCAGGTGGAAGGTATAGTTGATACACTTTGTGCCAATATGCTTTCGGATACTGAGCAGCTAAGGGACATCAGCAGCATTGGATTAAAGACTGTAATTTCTGAACTCCCACTGGGTTCCAATACTCTTGCTGCTAATGTTTGTAAGAAAATAACTGGTAAATTGAGTAGTGCTATAGAAAAGCAAGAAGATGTTTCAGTTCAACTTGAAGCACTTGATATTCTTGCTGATTTATTGAGCAGATTTGGTGGTTTATTGATATCATTTCATCCTATGCTGCTCAATTCACTGTTGCCGCAGCTTGCATCTCCCCGTCAGGCTGTTCGCAAGCGCACCATAGTTGCGTTGTCACATTTGGTCATGTCTTGCAATGCTTCGCTTTATAACAAGTTAATAGACCATCTACTGGAGGGTCTGAGCTCTTCAACTTCATCAAGTGTCAGCCGAACACACATACAGTGCATTGCTTCTATATGTCGTCAAGCTGGACACCGATTTGGTGAACAATTGTGGCGTGTGGCACCATCAGTTTTGGAATATTCAAAAGATACAGATGAAGAATTACGGGAACATTGCTTGCAGGCTCTTGAAGCATTTGTCCTCAAGTGTCCTAAAGAAGTCCAACCACATATACCTACGATAATTGATCTATGCCTGAAGATGATAACATATGATCCAAATTACAACTATGAGGATGAAGAGGGAGTGTGTGATGATGACGAAGAAATGGAAGATGACACATACTCACCTGATGCGGATCCTGAATCTGACTCAGAAGAGTATTCGGATGATGATGACATGTCCTGGAAAGTGAGACGTGCTGCAGCTAAATGTCTTGAATCTGTGATAGCTACGCGTCACGAGCTCTTAGCCGAGATGTACCATACAGTTTCGCCAGCTTTGATTGCTAGATTTAAAGAACGCGAGGAAAATGTGAAGTGTGATATATTGAGCGCCTACACAGCTTTACTGAGAGCAACTCGACCTCCACCAGCCTTACAAATCTCTGGGACCCCGGCTGATAACTCACCACAGGCTTTACTAATTCAAACGGTGAGCAGCATAGTGCGGGGCGCTCTGCGTGTGATACGCGGGCGCAGCGTGAGGGCGCGCGGCTGCGCACTGTCGCTGCTACGGGAGCTGCTCGCTGCGGCGCCGGGCTGTCTGTCCGACCACGTGGCGCGGGTGGTGCGCGCTCTCACACCGGCTCTCCTGGACAAGACCACAGCATCATCGATGAAGATCGAGACGTTAGTGTTCATTGGTTGCCTGGTGCGCGGGCAGGGCGCCGGTATGCGAGAGCACGCGGCGGCGCTGCTGCCGGCCGTGCTGGCAAGCGTGCACGACCCCTTCTACAAAGTTACTGCTGAGGCTCTTAGGGTGCTTCAGCTTCTGGTCAAGATTATGCGGCCTCTGGACAATATAGAAGGCGCCGATGGTGAAGTAGAAGTTGCAGTTGAGCCTCCTCCGGAAGAGTTGAAACAGTTTATACCTGCAATGTACGAGTGCAATCTAGTGAGACTGCGGGCCACAGATATGGACCAGGAAGTAAAAGAACGAGCTATAGCTGCTTGCGGACAGCTCTTGTGTCATTTTGGAGATTATTTACAGAACGAGCTCCCTGTGTGTCTTCCAATATTTTTAGAGCGACTTCGAAACGAAATAACTCGCCTCACTACCGTTAAAGCTTTGACAAAAGTAGCATCGTCACCGTTGAGGATCGATCTCACTCCTATTTTGTCTGATGCTGTACCTATTCTCGGGTCGTTCTTAAGAAAAAATCAAAGAGCATTGAAATTGTCAACACTGGTCCTTCTAGACACTCTGGTACAGAATTATAGTCATGCCATCAGCATTGAACTTTTGAGCAAGGTGCTGATGGAGGTGCCGGCCTTGGTGTGCGAGCAGGACCTGCACTGCGCGCAGACGGCTCTGGCGCTGGTGCGGTCCGCCTGCCTGCGCTGTCCCGCCGCCCTCACCGCGGACGCGCGCTACGCCCTCACCCCCAAAATACTCGCGCTCGCCAAGTCGCCGCTACTCCAAGGCGGCGCTCTCAAAGCAATGTTGGGCGTCCTGAGTGCTCTGGTGTCGGCCGACGTGGCGGGCTGTTCGCGCCGCGAGCTGCTTGCCTTGTTGGTGATGCCCGTGCGTCGCTTGCAAGAGCACAACGCTACCGCACACCATATCAAACAGGCGTTCCATTCATTGTCGAAATGCGTGGCGGCCGTGGTGGTGGAGGGGGGGCCGGAAGCGGGCGAGGCGGTGCGAGGCTTCCTGCGCGACGCCGCACACCCGCCCTCCGACGCGCACCACATGTTCTCGCTGCTCGCCCTCGCTGAGATCGGACGACATCTAGATCTGAGTTCGGTTCCGAATTTGAAGGAAGTACTGCTCAATTCTTTCACGCCGTCTTCGGAAGAAGTGAAGTCCGCTGCTAGTTACGCCCTCGGCTCCGTTGCAGTGGGTAACCTTCCAGAATTCTTGCCCTTCATCCTGGGTGAGATCGAGGCTCAGCCCAAACGCCAGTACCTCCTGCTTCATTCGCTAAGAGAGATCATCTCATCAGAGTCATGTACTCCGGAAGGCGTGGAAGCTTTACGACCCTTTATACCACAGATTTGGGTACAATTATCTAAACATTGTCAGTGTGCTGAAGAAGGATCTCGGAATGTAGTAGCCGAATGCTTGGGTAAATTGTGTCTCCTTGAACCAGAGGAATTGTTGCCACATCTAAAAGAATTCTTGAAGTCACCGGAGCCTTTGACTAGAACAACGGCCGTTACTGCTGTTAAGTTTACTATATCTGATCAGCCGCAAGCCATAGACGGGTTGCTGCGCGGCTGCATGTGCGAGCTGCTGGTGCCGCTGCGGGACGCGGAGCTGGGCGTTCGGCGCGTGGCGCTCGTCGCCTTCAACTCGGCCGCGCACAACAAGCCCTCGCTCGTCCGCGACCTGCTGCCGCAAGTGCTGCCCACCATCTACGCTGAAACCAAAGTCAAGAAAGAACTGATTCGTGAAGTGGAGATGGGTCCGTTCAAGCACTCGGTGGACGACGGTCTCGATCTTCGTAAGGCGGCCTTCGAGTGCATGTACACGTTGCTGGGCACGTGCCTGGACCGCCTCGACGTGTTCGAGTTCCTGCGCCACGTGGAGGACGGGCTCCGCGACCACTACGACATCAAGATGCTGACGTACCTCATGTGTGCTCGCCTGGCGCAGCTGTGTCCGGCCGTCGTGCTGCAGAGGTTAGAAAGTCTAGTGGAGCCGTTGAGAGCGACGTGTACAATGAAAGTCAAAGCTAATTCCGTGAAACAAGAATATGAGAAACAAGATGAATTGAAACGGTCCGCCCTCCGCGCTACCGCTGCCTTGATGCAGATTCCAGAAGCAGATAAAAATCCTCATCTTATGGACTTCGTGACTCAAATTCGATCACTGCCCGAGCTTCAGCCGATCTTCGAGTCTATCCTGAAGGATTCGAGCGGGGCGGCCGGCCTGGACTCGAACCTCATGGACCAAAGCTAG
Protein
MANVSYHIAHLLEKMTSNDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEYQVEGIVDTLCANMLSDTEQLRDISSIGLKTVISELPLGSNTLAANVCKKITGKLSSAIEKQEDVSVQLEALDILADLLSRFGGLLISFHPMLLNSLLPQLASPRQAVRKRTIVALSHLVMSCNASLYNKLIDHLLEGLSSSTSSSVSRTHIQCIASICRQAGHRFGEQLWRVAPSVLEYSKDTDEELREHCLQALEAFVLKCPKEVQPHIPTIIDLCLKMITYDPNYNYEDEEGVCDDDEEMEDDTYSPDADPESDSEEYSDDDDMSWKVRRAAAKCLESVIATRHELLAEMYHTVSPALIARFKEREENVKCDILSAYTALLRATRPPPALQISGTPADNSPQALLIQTVSSIVRGALRVIRGRSVRARGCALSLLRELLAAAPGCLSDHVARVVRALTPALLDKTTASSMKIETLVFIGCLVRGQGAGMREHAAALLPAVLASVHDPFYKVTAEALRVLQLLVKIMRPLDNIEGADGEVEVAVEPPPEELKQFIPAMYECNLVRLRATDMDQEVKERAIAACGQLLCHFGDYLQNELPVCLPIFLERLRNEITRLTTVKALTKVASSPLRIDLTPILSDAVPILGSFLRKNQRALKLSTLVLLDTLVQNYSHAISIELLSKVLMEVPALVCEQDLHCAQTALALVRSACLRCPAALTADARYALTPKILALAKSPLLQGGALKAMLGVLSALVSADVAGCSRRELLALLVMPVRRLQEHNATAHHIKQAFHSLSKCVAAVVVEGGPEAGEAVRGFLRDAAHPPSDAHHMFSLLALAEIGRHLDLSSVPNLKEVLLNSFTPSSEEVKSAASYALGSVAVGNLPEFLPFILGEIEAQPKRQYLLLHSLREIISSESCTPEGVEALRPFIPQIWVQLSKHCQCAEEGSRNVVAECLGKLCLLEPEELLPHLKEFLKSPEPLTRTTAVTAVKFTISDQPQAIDGLLRGCMCELLVPLRDAELGVRRVALVAFNSAAHNKPSLVRDLLPQVLPTIYAETKVKKELIREVEMGPFKHSVDDGLDLRKAAFECMYTLLGTCLDRLDVFEFLRHVEDGLRDHYDIKMLTYLMCARLAQLCPAVVLQRLESLVEPLRATCTMKVKANSVKQEYEKQDELKRSALRATAALMQIPEADKNPHLMDFVTQIRSLPELQPIFESILKDSSGAAGLDSNLMDQS

Summary

EMBL
BABH01014113    BABH01014114    BABH01014115    BABH01014116    ODYU01007628    SOQ50574.1    + More
KQ460207    KPJ16658.1    AGBW02008206    OWR54010.1    NEVH01016293    PNF26090.1    KK852554    KDR21462.1    KQ434892    KZC10543.1    NWSH01000078    PCG79833.1    GECZ01029724    JAS40045.1    GEBQ01002119    JAT37858.1    KZ288271    PBC29746.1    AAZX01002659    GL450787    EFN80451.1    GBYB01013094    JAG82861.1    NNAY01000958    OXU25729.1    GEDC01013186    JAS24112.1    KQ414736    KOC62116.1    QOIP01000001    RLU26224.1    DS235886    EEB20457.1    KQ435710    KOX79890.1    ADTU01020821    ADTU01020822    ADTU01020823    GL888334    EGI62557.1    GBBI01002484    JAC16228.1    GECL01003045    JAP03079.1    GBGD01000147    JAC88742.1    GFTR01008703    JAW07723.1    KQ981940    KYN32713.1    KQ978231    KYM96129.1    KQ980745    KYN13658.1    GDKW01001087    JAI55508.1    KQ976529    KYM81756.1    KQ983115    KYQ47288.1    GL439548    EFN67101.1    ACPB03011802    GG666552    EEN56229.1    KK121026    KFM79600.1    GEZM01005504    JAV96129.1    IAAA01007892    LAA01905.1    AXCN02001967    AAAB01008980    EAA13915.4    APCN01001664    JH431887    JH823253    EKC19309.1    PZQS01000004    PVD32164.1    ATLV01010838    KE524620    KFB35727.1    GGMS01003255    MBY72458.1    GDRN01093569    JAI59862.1    GGFL01000198    MBW64376.1    GGFK01003473    MBW36794.1    GGFJ01000812    MBW49953.1    GFDF01008342    JAV05742.1    CH477322    EAT43596.1    ABLF02028736    ABLF02028742    GFDL01013110    JAV21935.1    DS232030    EDS32544.1    GFDL01013109    JAV21936.1    AXCM01000552    GFXV01003992    MBW15797.1    CVRI01000055    CRL01197.1    HACA01007453    CDW24814.1    GDIQ01108023    JAL43703.1    GDIQ01120567    JAL31159.1    GDIQ01089578    JAN05159.1    GDIP01079427    JAM24288.1    GDIP01205569    GDIQ01184146    GDIQ01184145    GDIP01135420    GDIQ01089577    GDIQ01038155    JAJ17833.1    JAK67579.1    GDIP01215512    GDIQ01173442    GDIP01086584    JAJ07890.1    JAK78283.1    GDIP01163267    JAJ60135.1    GDIQ01138069    JAL13657.1    GDIQ01105627    JAL46099.1    GDIQ01175746    GDIQ01058586    JAN36151.1    GDIP01252253    JAI71148.1    GDIQ01157197    JAK94528.1    GDIQ01151911    JAK99814.1    GDIP01252252    JAI71149.1    GDIQ01211137    JAK40588.1    GDIQ01041202    JAN53535.1    GDIQ01105626    JAL46100.1    GDIP01229367    JAI94034.1    GFWV01020963    MAA45691.1    GDIP01069833    JAM33882.1    GDIP01081825    JAM21890.1    GDIQ01055891    JAN38846.1    KQ971307    KYB29760.1   
Pfam
PF08623   TIP120        + More
PF11865   DUF3385
Interpro
IPR011989   ARM-like        + More
IPR013932   TATA-bd_TIP120       
IPR016024   ARM-type_fold       
IPR039852   CAND1/CAND2       
IPR024585   DUF3385_TOR       
IPR021133   HEAT_type_2       
IPR034085   TOG       
SUPFAM
SSF48371   SSF48371       
Gene 3D
PDB
4A0C     E-value=0,     Score=3251

Ontologies

Topology

Length:
1255
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0656900000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00282
outside
1  -  1255
 
 

Population Genetic Test Statistics

Pi
269.09605
Theta
186.70531
Tajima's D
1.600201
CLR
0.166008
CSRT
0.807309634518274
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
31250652 IDLTPILVAECLGKLCLLEPEELLPHLK 100.00 4e-06
28556443 FMATNDLMTELQK 100.00 0.001
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