Gene

KWMTBOMO02647  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002654

Annotation

putative_ATP-dependent_RNA_helicase_DDX51_[Operophtera_brumata]

Location

Bomo_Chr5(-):7853074-7858818      View in EpiBrowser

Full name

Probable ATP-dependent RNA helicase Dbp73D      

Location in the cell

Nuclear   Reliability : 2.475

CDS

ATGGATTTATTTATTATTAACAGATATAATGACACAAATGATGATACACATATAATAGAACAAGAAGCAAAACGCCTAGAACAATTGAAGCAAAGAATTGAAGAACGTAGAAAAGCATTTTCAGTAAAAAAATCGTCTGATGTCATTACTTTGAAAGAAGAAAAACAAACTGAAATTTTACCTGACCTTCCCGTTTCTACTAATGATGATTTGCCAACGGAAATACCAAAACCAAATACACCTCCAAAACCAAAAGAAAAAATTTATGCTGAAAAACAAAAAGAATTTAAAGTTCTTGGATCAAGTGACTTTCAAAAAAAATCTAAGGTGCAGAGAATATTACCATACTGGCTATCGCATCCTACAGTTGTATCAAGAGATTTAAATGAACTATCTTGTCCAGTTGAAGAACAAGAATGGCTACACCCAGTAATAAAGTCTACTTTATTGAGCGAAGGCATAACAAAACTATTTCCAGTTCAAAATCAAGTGGTACCATTCATTTTAAATGAGCATACATTGCCAAAATTATTTCAACCTCGTGACGTTTGCATCTCAGCACCAACAGGAAGTGGCAAAACACTGTCATTTGTCATACCTATAGTGCAGCTTCTAATGAAAGATGTGGGTTGCAAAATACGAGCACTTGTGGTATTACCAGTACAAGAGTTAGCTGCTCAAGTTGCTAAAGTATTTAAGAAGTATTGCAATAGAACTCATCTTAAAGTTGCTCTCTTGAGTGGTTCAGTTCCCTTTCAACAGGAACAGCAAGAGCTTGTCAGATTTACTGAATCAGTAGGATGGGTCAGTAAAGTAGAAATCATTGTATGTACAGCAGGAAGATTGGTTGAGCACTTAAAGACTACAGAAGGTTTCAATTTACAACATTTAAAGTTTTTAGTTATTGATGAAGCTGACCGAATTATGGATAACATACAAAATGATTGGCTCTACCATGTTGATCATCATATCAAACAAGGGAGTGAATTGATGACAGGGAAAGTTCAGAGTTTAAATTGGAAAAATGTGAGTAAACAAAAATTAGCACCCCAAAAATTACTCTTCTCTGCCACATTATCCCAAGATCCAGAGAAGTTGGAACAGTGGGGGCTATTTCAACCAAAATTGTTTTCTGCTGCCACTAATGAATGTTTTGAAGATGAAGACCAAATCAGAAAATATGCTACACCTGCAGAACTTAAGGAACACTATGTTGTATGTGAAGCAGAGAACAAACCTCTTGTACTTTATAATTTTTTAGTAGAACAAAAATGGGATAAAGTATTATGTTTTACAAATGCTGCTGAAACAACTCACAGGCTAACTGTACTTTTAAACACATGGGCTTGTAAAGGATTAAAAGTAGCTGAATTGTCAGCCGCTTTAGATAGATCAATGAGGGAAAATGTTTTAAAGAAATTCATGCTCTCTGAAATTGATGTGTTAATCAGCACTGATGCATTAGCCAGAGGTATCGATATACCAGATTGCAACTACGTAATATCTTATGATCCTCCACGGAACATAAAAACATACATACATCGAGTTGGTAGAACAGGAAGAGCTGGAAAGATTGGTAAAGCAGTAACTGTGCTATTGCCAAGTCAAATCAGCTTATTTAAGGATCTTATAAAAGCAGGAGGAAAAGAGGAAATTCCGGAAATTAAAATTAATACTGATGTAATTGATCGTTTATTCGAAAGTTATGCATCTGCCATGAACACAACGAGAGAAAAAATAAATTCAGAGCTAAACTTGAAAATTAAAAACTCAATAGAAATTAAAAGAAGTGCTAAAAGTAAAATTCAAAAGAGAAAAAAATAG

Protein

MDLFIINRYNDTNDDTHIIEQEAKRLEQLKQRIEERRKAFSVKKSSDVITLKEEKQTEILPDLPVSTNDDLPTEIPKPNTPPKPKEKIYAEKQKEFKVLGSSDFQKKSKVQRILPYWLSHPTVVSRDLNELSCPVEEQEWLHPVIKSTLLSEGITKLFPVQNQVVPFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLMKDVGCKIRALVVLPVQELAAQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAGRLVEHLKTTEGFNLQHLKFLVIDEADRIMDNIQNDWLYHVDHHIKQGSELMTGKVQSLNWKNVSKQKLAPQKLLFSATLSQDPEKLEQWGLFQPKLFSAATNECFEDEDQIRKYATPAELKEHYVVCEAENKPLVLYNFLVEQKWDKVLCFTNAAETTHRLTVLLNTWACKGLKVAELSAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGKIGKAVTVLLPSQISLFKDLIKAGGKEEIPEIKINTDVIDRLFESYASAMNTTREKINSELNLKIKNSIEIKRSAKSKIQKRKK

Description

ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits.

Catalytic Activity

ATP + H2O = ADP + H(+) + phosphate

Similarity

Belongs to the DEAD box helicase family.
Belongs to the DEAD box helicase family. DDX51/DBP6 subfamily.

Keywords

ATP-binding   Complete proteome   Helicase   Hydrolase   Nucleotide-binding   Nucleus   Reference proteome   Ribosome biogenesis   RNA-binding   rRNA processing  

Feature

chain  Probable ATP-dependent RNA helicase Dbp73D

Uniprot

H9IZG9   A0A2H1WBW1   A0A2A4K6G6   A0A2W1BH27   A0A0L7LVF8   A0A194RGE4   + More
A0A194PMW9   A0A212FJV1   D6WD90   A0A1Y1M9I5   A0A336KF26   A0A336MJC5   A0A2J7PJ57   W8BUG2   A0A0A1WSX0   A0A084W143   A0A0L0CB09   A0A067QQD0   A0A1I8NT42   A0A1I8NT35   A0A034V452   N6TWN3   A0A1Q3F1K4   A0A0K8UPS4   E0VWC9   A0A1Q3F1X7   A0A182N9A6   A0A1I8M450   A0A2M4APT5   A0A1I8MVI4   A0A1A9XQZ6   W5JV16   A0A2M4ANH7   A0A1A9UP15   A0A182JFD2   A0A1B0DIE3   A0A1A9Z922   A0A182PIJ1   A0A182TEN0   A0A182WWI2   B4LG52   A0A182I6R2   Q7QIL5   A0A182L3N3   A0A0P6IVI1   A0A1B0G7J1   A0A182WBI4   A0A182MFL8   B0W5M0   A0A1B6GYE8   B4KXL0   A0A1B0C2P6   A0A0A9Z2H7   B4MM57   A0A182FEM3   A0A069DV92   A0A182JRN8   A0A182Y2B7   A0A1S4GTP2   A0A146L1M0   A0A0V0G5F8   B4IXF5   P26802   A0A1W4UGI4   A0A1A9W4X8   A0A3B0KLV4   A0A3B0KUD8   B4PKA4   B3NDI1   A0A182VAG1   A0A182RJL1   A0A224X9K7   A0A182Q8N8   B3M4E5   B4QMY0   Q29DT5   A0A023EZG8   A0A1B6C6W5   B4HK61   T1PJQ9   A0A0M5J467   A0A2K6P3N6   A0A2R2MRE2   A0A2P8ZHG2   G1M4Z3   A0A1U7R9Y5   A0A2K5UU65   A0A1J1IBZ4   A0A2K5IPK8   A0A287BGR7   A0A151N4A6   A0A091N2K9   D2HLG6   A0A2K6BYN8   A0A2K5RE81   A0A2K5M739   G7PJH3   A0A2K5RE66   A0A2K6FP00  

EC Number

3.6.4.13

Pubmed

19121390    28756777    26227816    26354079    22118469    18362917    + More
19820115    28004739    24495485    25830018    24438588    26108605    24845553    25348373    23537049    20566863    25315136    20920257    23761445    17994087    12364791    20966253    26999592    25401762    26334808    25244985    26823975    1620603    10731132    12537572    12537569    17550304    22936249    15632085    25474469    25362486    29403074    20010809    22293439    22002653   

EMBL

BABH01014116    BABH01014117    ODYU01007628    SOQ50575.1    NWSH01000078    PCG79831.1    + More
KZ150098    PZC73571.1    JTDY01000024    KOB79364.1    KQ460207    KPJ16657.1    KQ459597    KPI94776.1    AGBW02008206    OWR54011.1    KQ971321    EEZ99527.1    GEZM01036946    JAV82323.1    UFQS01000244    UFQT01000244    SSX01935.1    SSX22312.1    UFQT01001136    SSX29079.1    NEVH01024950    PNF16375.1    GAMC01013786    JAB92769.1    GBXI01012774    JAD01518.1    ATLV01019208    KE525264    KFB43937.1    JRES01000665    KNC29431.1    KK853579    KDR06549.1    GAKP01021678    JAC37274.1    APGK01058443    KB741288    KB632370    ENN70712.1    ERL93709.1    GFDL01013605    JAV21440.1    GDHF01023801    JAI28513.1    DS235818    EEB17685.1    GFDL01013482    JAV21563.1    GGFK01009459    MBW42780.1    ADMH02000413    ETN66624.1    GGFK01009010    MBW42331.1    AJVK01034367    CH940647    EDW69360.1    APCN01003693    AAAB01008807    EAA04138.4    GDUN01000083    JAN95836.1    CCAG010022573    AXCM01000934    DS231843    EDS35503.1    GECZ01002324    JAS67445.1    CH933809    EDW18696.1    JXJN01024604    GBHO01004970    GBHO01004969    GBRD01008059    JAG38634.1    JAG38635.1    JAG57762.1    CH963847    EDW73066.1    GBGD01000901    JAC87988.1    GDHC01016780    JAQ01849.1    GECL01002846    JAP03278.1    CH916366    EDV96392.1    M74824    AE014296    AF132173    BT010045    OUUW01000012    SPP87559.1    SPP87558.1    CM000159    EDW94802.1    CH954178    EDV52043.1    GFTR01007389    JAW09037.1    AXCN02000558    CH902618    EDV40439.1    CM000363    CM002912    EDX10772.1    KMZ00101.1    CH379070    EAL30329.2    GBBI01004079    JAC14633.1    GEDC01028055    JAS09243.1    CH480815    EDW41802.1    KA649022    AFP63651.1    CP012525    ALC43426.1    ALC44899.1    ALC44906.1    PYGN01000057    PSN55931.1    ACTA01027180    ACTA01035180    AQIA01013500    CVRI01000047    CRK97797.1    AEMK02000096    AKHW03004053    KYO31622.1    KL375005    KFP83134.1    GL193005    EFB16388.1    CM001286    EHH66849.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053240    UP000053268    UP000007151    + More
UP000007266    UP000235965    UP000030765    UP000037069    UP000027135    UP000095300    UP000019118    UP000030742    UP000009046    UP000075884    UP000095301    UP000092443    UP000000673    UP000078200    UP000075880    UP000092462    UP000092445    UP000075885    UP000075902    UP000076407    UP000008792    UP000075840    UP000007062    UP000075882    UP000092444    UP000075920    UP000075883    UP000002320    UP000009192    UP000092460    UP000007798    UP000069272    UP000075881    UP000076408    UP000001070    UP000000803    UP000192221    UP000091820    UP000268350    UP000002282    UP000008711    UP000075903    UP000075900    UP000075886    UP000007801    UP000000304    UP000001819    UP000001292    UP000092553    UP000233200    UP000085678    UP000245037    UP000008912    UP000189705    UP000233100    UP000183832    UP000233080    UP000008227    UP000050525    UP000233120    UP000233040    UP000233060    UP000009130    UP000233160   

PRIDE

H9IZG9    P26802   

Pfam

PF00271   Helicase_C        + More
PF00270   DEAD
PF10493   Rod_C

Interpro

IPR027417   P-loop_NTPase        + More
IPR001650   Helicase_C       
IPR000629   RNA-helicase_DEAD-box_CS       
IPR014001   Helicase_ATP-bd       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR019527   RZZ-complex_KNTC1/ROD_C       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR038757   BRAP       

SUPFAM

SSF52540   SSF52540       

CDD

cd00079  HELICc

ProteinModelPortal

H9IZG9   A0A2H1WBW1   A0A2A4K6G6   A0A2W1BH27   A0A0L7LVF8   A0A194RGE4   + More
A0A194PMW9   A0A212FJV1   D6WD90   A0A1Y1M9I5   A0A336KF26   A0A336MJC5   A0A2J7PJ57   W8BUG2   A0A0A1WSX0   A0A084W143   A0A0L0CB09   A0A067QQD0   A0A1I8NT42   A0A1I8NT35   A0A034V452   N6TWN3   A0A1Q3F1K4   A0A0K8UPS4   E0VWC9   A0A1Q3F1X7   A0A182N9A6   A0A1I8M450   A0A2M4APT5   A0A1I8MVI4   A0A1A9XQZ6   W5JV16   A0A2M4ANH7   A0A1A9UP15   A0A182JFD2   A0A1B0DIE3   A0A1A9Z922   A0A182PIJ1   A0A182TEN0   A0A182WWI2   B4LG52   A0A182I6R2   Q7QIL5   A0A182L3N3   A0A0P6IVI1   A0A1B0G7J1   A0A182WBI4   A0A182MFL8   B0W5M0   A0A1B6GYE8   B4KXL0   A0A1B0C2P6   A0A0A9Z2H7   B4MM57   A0A182FEM3   A0A069DV92   A0A182JRN8   A0A182Y2B7   A0A1S4GTP2   A0A146L1M0   A0A0V0G5F8   B4IXF5   P26802   A0A1W4UGI4   A0A1A9W4X8   A0A3B0KLV4   A0A3B0KUD8   B4PKA4   B3NDI1   A0A182VAG1   A0A182RJL1   A0A224X9K7   A0A182Q8N8   B3M4E5   B4QMY0   Q29DT5   A0A023EZG8   A0A1B6C6W5   B4HK61   T1PJQ9   A0A0M5J467   A0A2K6P3N6   A0A2R2MRE2   A0A2P8ZHG2   G1M4Z3   A0A1U7R9Y5   A0A2K5UU65   A0A1J1IBZ4   A0A2K5IPK8   A0A287BGR7   A0A151N4A6   A0A091N2K9   D2HLG6   A0A2K6BYN8   A0A2K5RE81   A0A2K5M739   G7PJH3   A0A2K5RE66   A0A2K6FP00  

PDB

6EM5     E-value=1.19245e-39,     Score=412

KEGG

101744385    K14807 ATP-dependent RNA helicase DDX51/DBP6 [EC:3.6.4.13] | (RefSeq) probable ATP-dependent RNA hel

GO

GO:0003676   GO:0005524   GO:0004386   GO:0005730   GO:0006364   GO:0003723   GO:0008270   GO:0016021   GO:0006812   GO:0015299   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

PANTHER

PTHR35259  

Subcellular location

  

Length:

607

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0168899999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00323

outside

1  -  607

 

 

Pi

223.280975

Theta

190.314837

Tajima's D

0.695422

CLR

0.253463

CSRT

0.578321083945803

Interpretation

Uncertain