Gene

KWMTBOMO02637

Annotation

PREDICTED:_mRNA_turnover_protein_4_homolog_[Papilio_polytes]

Location

Bomo_Chr5(-):7678119-7680307      View in EpiBrowser

Full name

Ribosome assembly factor mrt4       + More
mRNA turnover protein 4 homolog      

Alternative Name

Ribosome assembly factor Mrto4

Location in the cell

Cytoplasmic   Reliability : 1.497 Nuclear   Reliability : 1.917

CDS

ATGCCGAAATCAAAAAGGGATAAGAAAGTATCACTTACAAAAACCAACAAAAAAGGTTTAGTACACAAACAAAAAGTCATAGAAGAAATAAGAAATTCACTGAGCAAATATGAACACATATTTTTGTTTACCATCAATAACATGAGAAATACAAAATTAAAGGACCTACGGAATGATTGGAAGGATTCCAGATTCTTTTTTGGAAAAAATAAAGTAATGGCTATTGCTCTTGGTAAGACCAAGAGTGATGAAATAGAAGAGCAACTAAATCTGTTATCAAAAAAATTAAAAGGTCAGTGTGGATTGCTAATGACAAATAGAGATGTGCCTGATGTACTGAACTGGTTTAAAAGTTATCAAGCATCAGAATATGCAAGAGCTGGCTTCATTGCAACAAAAGATGTTTTATTACCCAAAGGTCCTCTAGCAGATTTTTCACACACTATTGAGCCACATTTAAGACGTTTGGGCTTACCTACATCTCTAGAAAAAGGTGTTATCAATCTAATAAAAGAATATCAGGTTTGCAAGAAAGGTGCTCCACTGACCCCAGAACAAGCAAGTATATTAAAATTGATAGGCATAGAAATGGCAGATTTTAAGTTAGTGATTAAATGTCACTGGACAAAAGGAAAAGGTATCCATATAGACAATGATTCTCCAAGTGATGAAGAACAGGCAGAGAATGATGATCATCAAGAAAATGTACTTGTAGACGAAATAATGGAAGAGACATAA

Protein

MPKSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDWKDSRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQASEYARAGFIATKDVLLPKGPLADFSHTIEPHLRRLGLPTSLEKGVINLIKEYQVCKKGAPLTPEQASILKLIGIEMADFKLVIKCHWTKGKGIHIDNDSPSDEEQAENDDHQENVLVDEIMEET

Description

Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.

Subunit

Associates with the pre-60S ribosomal particle.

Similarity

Belongs to the universal ribosomal protein uL10 family.

Keywords

Complete proteome   Cytoplasm   Nucleus   Phosphoprotein   Reference proteome   Ribosome biogenesis  

Feature

chain  mRNA turnover protein 4 homolog

Uniprot

A0A2H1W034   A0A194PMV4   A0A194RKZ3   A0A2A4K7G6   A0A212FJW3   A0A1E1W6I7   + More
A0A2W1BEI8   S4PBW9   A0A0L7LVF3   B4NX51   A0A1W4UZZ2   B4NSC5   B3N6I4   B4HMD2   A0A034V6Q5   A0A0A9YT94   A0A0K8T745   A0A2A3EA80   A0A2P8Y9B0   A0A1I8NAQ4   A0A1Y1LKJ7   Q7K1Q7   W8ARJ8   A0A0L7RIT3   A0A2J7QM55   A0A088AHX0   B4MQ55   B3MD11   A0A1I8PZQ8   B4KSJ6   A0A0L0C6J0   B4GHX1   Q28ZD5   B4LMG3   N6UJC7   A0A224XVL5   A0A1B6CLC1   A0A3B0J103   B4J7I2   A0A023G733   A0A0M4EEN3   A0A336MVX9   A0A1B0B664   K4GJE7   A0A232EJB6   K7ISN8   R4G5E5   A0A023FER8   A0A1B0CAA6   A0A2K6SXV3   K4FRK4   A0A224Z2F1   H3BIS6   A0A131Z2H3   A0A1A9Z2L5   A0A131XNY0   A0A2A3EBS7   A0A224Z4T2   A0A023FV74   A0A1A9UY56   J3JVH2   A0A1E1XEX6   A0A3B4EN27   A0A2D0PN10   A0A023FIF8   F6QB78   K4G776   A0A310S4N0   W5K8T1   A0A1B0D9G9   A0A182MNM5   M4AS99   A0A182XZI0   G3NA42   A0A182NHK0   A2AMU9   Q9D0I8   A0A147BEM8   A0A131Y813   A0A2M3ZGF9   A0A250YDF9   A0A182P3I2   A0A3P8Q5T6   A0A3P9C9H0   Q7SZU0   A0A2M4AEY8   A0A1L8DGS4   D6X3W1   Q7PTC8   A0A1L8FPE0   A0A182X6F8   A0A3B5ME43   I3KA58   A0A3B4GTD6   A0A2M3ZGM9   A0A1U7QKX6   A0A182KRV1   W5JWT1   M3WA75   A0A2K6EWQ2  

Pubmed

26354079    22118469    28756777    23622113    26227816    17994087    + More
17550304    22936249    25348373    25401762    26823975    29403074    25315136    28004739    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485    26108605    15632085    23537049    23056606    28648823    20075255    28797301    9215903    26830274    28049606    22516182    28503490    25243066    25329095    23542700    25244985    15489334    21183079    16141072    29652888    28087693    25186727    18362917    19820115    12364791    14747013    17210077    27762356    20966253    20920257    23761445    17975172   

EMBL

ODYU01005438    SOQ46286.1    KQ459597    KPI94761.1    KQ460207    KPJ16646.1    + More
NWSH01000078    PCG79854.1    AGBW02008206    OWR54022.1    GDQN01008456    JAT82598.1    KZ150098    PZC73579.1    GAIX01004411    JAA88149.1    JTDY01000024    KOB79359.1    CM000157    EDW89612.1    CH982118    CM002911    EDX15503.1    KMY92676.1    CH954177    EDV58153.1    CH480816    EDW47209.1    GAKP01020773    JAC38179.1    GBHO01008200    JAG35404.1    GBRD01004595    GDHC01015602    JAG61226.1    JAQ03027.1    KZ288310    PBC28637.1    PYGN01000786    PSN40831.1    GEZM01057866    JAV72106.1    AE013599    AY061517    AAF58844.1    AAL29065.1    GAMC01019342    JAB87213.1    KQ414583    KOC70775.1    NEVH01013227    PNF29628.1    CH963849    EDW74244.1    CH902619    EDV36326.1    CH933808    EDW09501.1    JRES01000827    KNC28023.1    CH479183    EDW36091.1    CM000071    EAL25678.1    CH940648    EDW62058.1    APGK01017667    KB740047    KB632403    ENN81850.1    ERL94996.1    GFTR01004387    JAW12039.1    GEDC01023105    JAS14193.1    OUUW01000001    SPP74457.1    CH916367    EDW01106.1    GBBM01006760    JAC28658.1    CP012524    ALC41664.1    UFQT01002555    SSX33681.1    JXJN01008987    JX208810    JX209258    JX210587    AFM87572.1    AFM88901.1    NNAY01004074    OXU18412.1    AAZX01012318    ACPB03011888    GAHY01000625    JAA76885.1    GBBK01004957    JAC19525.1    AJWK01003564    JX052310    AFK10538.1    GFPF01009965    MAA21111.1    AFYH01000992    AFYH01000993    GEDV01003565    JAP84992.1    GEFH01000274    JAP68307.1    PBC28636.1    GFPF01009966    MAA21112.1    GBBL01002730    JAC24590.1    BT127240    AEE62202.1    GFAC01001366    JAT97822.1    GBBK01003160    JAC21322.1    GAMT01006408    GAMR01006467    GAMP01008975    JAB05453.1    JAB27465.1    JAB43780.1    JX209612    AFM87926.1    KQ775960    OAD52222.1    AJVK01028240    AXCM01001710    BC138221    BC145205    AAI45206.1    AK011387    BC005734    GEGO01006173    JAR89231.1    GEFM01000153    JAP75643.1    GGFM01006861    MBW27612.1    GFFW01003194    JAV41594.1    BC056008    AAH56008.1    GGFK01006023    MBW39344.1    GFDF01008453    JAV05631.1    KQ971379    EEZ97361.1    AAAB01008807    EAA04106.4    CM004478    OCT73438.1    AERX01033929    AERX01033930    GGFM01006859    MBW27610.1    ADMH02000160    ETN67534.1    AANG04003369   

Proteomes

UP000053268    UP000053240    UP000218220    UP000007151    UP000037510    UP000002282    + More
UP000192221    UP000000304    UP000008711    UP000001292    UP000242457    UP000245037    UP000095301    UP000000803    UP000053825    UP000235965    UP000005203    UP000007798    UP000007801    UP000095300    UP000009192    UP000037069    UP000008744    UP000001819    UP000008792    UP000019118    UP000030742    UP000268350    UP000001070    UP000092553    UP000092460    UP000215335    UP000002358    UP000015103    UP000092461    UP000233220    UP000008672    UP000092445    UP000078200    UP000261440    UP000221080    UP000008225    UP000018467    UP000092462    UP000075883    UP000002852    UP000076408    UP000007635    UP000075884    UP000000589    UP000075885    UP000265100    UP000265160    UP000007266    UP000007062    UP000186698    UP000076407    UP000261380    UP000005207    UP000261460    UP000189706    UP000075882    UP000000673    UP000011712    UP000233160   

PRIDE

Q7K1Q7    Q9D0I8   

Pfam

PF17777   RL10P_insert        + More
PF00466   Ribosomal_L10

Interpro

IPR001790   Ribosomal_L10P        + More
IPR033867   Mrt4       
IPR040637   RL10P_insert       
IPR016024   ARM-type_fold       

SUPFAM

SSF48371   SSF48371       

CDD

cd05796  Ribosomal_P0_like

ProteinModelPortal

A0A2H1W034   A0A194PMV4   A0A194RKZ3   A0A2A4K7G6   A0A212FJW3   A0A1E1W6I7   + More
A0A2W1BEI8   S4PBW9   A0A0L7LVF3   B4NX51   A0A1W4UZZ2   B4NSC5   B3N6I4   B4HMD2   A0A034V6Q5   A0A0A9YT94   A0A0K8T745   A0A2A3EA80   A0A2P8Y9B0   A0A1I8NAQ4   A0A1Y1LKJ7   Q7K1Q7   W8ARJ8   A0A0L7RIT3   A0A2J7QM55   A0A088AHX0   B4MQ55   B3MD11   A0A1I8PZQ8   B4KSJ6   A0A0L0C6J0   B4GHX1   Q28ZD5   B4LMG3   N6UJC7   A0A224XVL5   A0A1B6CLC1   A0A3B0J103   B4J7I2   A0A023G733   A0A0M4EEN3   A0A336MVX9   A0A1B0B664   K4GJE7   A0A232EJB6   K7ISN8   R4G5E5   A0A023FER8   A0A1B0CAA6   A0A2K6SXV3   K4FRK4   A0A224Z2F1   H3BIS6   A0A131Z2H3   A0A1A9Z2L5   A0A131XNY0   A0A2A3EBS7   A0A224Z4T2   A0A023FV74   A0A1A9UY56   J3JVH2   A0A1E1XEX6   A0A3B4EN27   A0A2D0PN10   A0A023FIF8   F6QB78   K4G776   A0A310S4N0   W5K8T1   A0A1B0D9G9   A0A182MNM5   M4AS99   A0A182XZI0   G3NA42   A0A182NHK0   A2AMU9   Q9D0I8   A0A147BEM8   A0A131Y813   A0A2M3ZGF9   A0A250YDF9   A0A182P3I2   A0A3P8Q5T6   A0A3P9C9H0   Q7SZU0   A0A2M4AEY8   A0A1L8DGS4   D6X3W1   Q7PTC8   A0A1L8FPE0   A0A182X6F8   A0A3B5ME43   I3KA58   A0A3B4GTD6   A0A2M3ZGM9   A0A1U7QKX6   A0A182KRV1   W5JWT1   M3WA75   A0A2K6EWQ2  

PDB

4NWB     E-value=1.96069e-43,     Score=440

KEGG

101736590    K14815 mRNA turnover protein 4 | (RefSeq) mRNA turnover protein 4 homolog

GO

GO:0005737   GO:0005730   GO:0000027   GO:0005840   GO:0006412   GO:0002181   GO:0022625   GO:0003735   GO:0030687   GO:0006364   GO:0000956   GO:0042273   GO:0042254   GO:0005622   GO:0016021   GO:0006812   GO:0015299   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

Subcellular location

Cytoplasm  
Nucleus  
Nucleolus  

Length:

245

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00104

Exp number, first 60 AAs:

0.00036

Total prob of N-in:

0.27372

outside

1  -  245

 

 

Pi

228.140908

Theta

191.369461

Tajima's D

0.480224

CLR

1.403103

CSRT

0.509824508774561

Interpretation

Uncertain