Gene

KWMTBOMO02635

Pre Gene Modal

BGIBMGA002642

Annotation

PREDICTED:_ras-related_GTP-binding_protein_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr5(+):7624978-7631176      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.287

CDS

ATGGACGATCCAAATTGTTATGTGGGGTCGTTCCCCAAAGATTTTACCTATGGACCTTTCGAGCAAAATGGAGATGGCGATAGTTCTTCTCTTCAAGACGATCACAAACCACGAATCCTTTTAATGGGCCTTAGAAGGTCTGGAAAATCATCAATTCAAAAAGTTGTATTTCACAAGATGTCTCCAAATGAGACATTGTTTTTAGAATCTACAAATCAAATTGTTAAAGACGACATTAATAACAGCAGTTTTGTACAATTTCAAATATGGGACTTTCCCGGGCAGATAGACTTCTTTGATCCTACATTTGATTCTGACACCATATTTGGTGGATGTGGAGCTCTTGTCTTTGTAATTGATGCGCAGGATGATTATCAAGATGCTTTGGATAAATTACAACTTACTGTCACTAAAGCCTACAGAGTGAATAGTAATATTAAATTTGAGGTGTTCATACATAAAGTTGATGGTCTCAATGATGATTACAAAATGGAATCTCAAAGGGATATACACCACCGGGCCACTGATGATCTTGCAGAAGCTGGTCTCCATCATGTACATCTATCCTTCCATCTTACAAGCATATATGACCATTCAATATTTGAAGCATTTAGCAAAGTAGTCCAAAAGCTAATACCTCAGTTGCCTACATTAGAAAATCTTTTAAATATACTGATATCTAATTCCGGAATAGAAAAGGCATTCCTATTTGATGTAGTATCAAAGATTTATATAGCCACTGACAGTTCACCAGTAGATATGCAAAGCTATGAGCTTTGCTGTGATATGATTGATGTCGTAATTGATATATCTTGTATTTATGGCATGGTGGATGAAACTGAAACAAATACGTTCAACAATGAAAGTTCGAGTTTGATAAAACTAAACAATGGTACTGTACTATATCTACGAGAGGTCAACAAATTCTTGGCATTGGTTTGCATTCTCAGGGAAGAAAATTTCCAAAAACAAGGTGTGATCGATTACAATTTCTTATGTTTCCGGCATGCTATTACGCAAGTCTTTGAACTTCGTAATAAATGTCAAAGTTCTGGAACTGACAGAAGAAGATCGGGTACTCCAGATGCTGTTCCAAACGGTGCTGCAGATTCCACTGAGAGTACTTCAGATCATTCACAGCCTCAGTTAGCATAA

Protein

MDDPNCYVGSFPKDFTYGPFEQNGDGDSSSLQDDHKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDFPGQIDFFDPTFDSDTIFGGCGALVFVIDAQDDYQDALDKLQLTVTKAYRVNSNIKFEVFIHKVDGLNDDYKMESQRDIHHRATDDLAEAGLHHVHLSFHLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNILISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIYGMVDETETNTFNNESSSLIKLNNGTVLYLREVNKFLALVCILREENFQKQGVIDYNFLCFRHAITQVFELRNKCQSSGTDRRRSGTPDAVPNGAADSTESTSDHSQPQLA

Uniprot

D3JSV8   A0A2W1BEM8   A0A2A4K859   A0A1E1WRI6   A0A194RFP6   A0A194PPU8   + More
A0A212FJW8   S4PYB6   H9IZF7   K7J4B1   A0A067RSQ5   A0A2J7RG12   A0A2J7RG05   A0A2J7RG15   E2BKQ2   A0A232F829   E2APE4   A0A2A3E2G3   A0A088ASD0   A0A026VVY8   E9I9Q3   A0A158NTD3   A0A195CLT5   A0A151J9X9   F4W3Y3   B0W3P3   A0A023ERA1   A0A1Q3FEE5   A0A1Y1KMZ7   A0A0N1ITX8   A0A1Y1KMC1   Q17AT2   A0A1B6CL71   A0A1B6C546   A0A1B6H0Y2   A0A1B6INS3   A0A1L8DVF6   A0A182QCF8   A0A1B6M7G7   T1JL47   A0A1S3I7K2   A0A182KRU5   A0A182UDT4   A0A182UVR9   Q7PTD6   A0A182I3Q2   A0A182X6E7   U5EQE9   A0A182JNY2   A0A182MQM4   A0A182NHK8   A0A182XZ98   A0A151X1S2   A0A195B3U0   A0A0T6BAL1   A0A154NZZ5   A0A182RFP1   A0A182WIS2   A0A2B4R6R1   A0A182P3J1   A0A1B0GJ67   W5J9P0   A0A2M4A7C1   A0A0M4MP51   A0A1B0D5F4   A0A2M4BR90   A0A2M3Z4X6   A0A034VEC9   W8BV62   A0A0K8VIP9   A0A1I8PBQ1   A0A1W4WL25   A0A182JFE4   W4ZAA5   A0A0K8TPU2   A0A0L0BPL7   D3TPQ6   T1PC66   B4J8C5   A7SI02   Q28ZX7   D6WDF9   E0VN58   A0A3B0JPG1   N6TKD7   A0A0L8FRD0   A0A2G8LCZ1   A0A1W4WB83   B4P2P3   B3MGU0   A0A1A9X4A0   A0A0J9R963   A0A0L7R403   Q7K519   B4QFB9   B4HRK9   B4LJN3   A0A2T7PF46   A0A087U2C6   B3N8T4  

Pubmed

28756777    26354079    22118469    23622113    19121390    20075255    + More
24845553    20798317    28648823    24508170    30249741    21282665    21347285    21719571    24945155    28004739    17510324    20966253    12364791    14747013    17210077    25244985    20920257    23761445    25348373    24495485    26369729    26108605    20353571    25315136    17994087    17615350    15632085    18362917    19820115    20566863    23537049    29023486    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

GU288815    ADB78702.1    KZ150098    PZC73582.1    NWSH01000078    PCG79842.1    + More
GDQN01001415    JAT89639.1    KQ460207    KPJ16643.1    KQ459597    KPI94759.1    AGBW02008206    OWR54024.1    GAIX01003573    JAA88987.1    BABH01014139    BABH01014140    AAZX01009455    KK852442    KDR23840.1    NEVH01004407    PNF39762.1    PNF39761.1    PNF39760.1    GL448819    EFN83750.1    NNAY01000718    OXU26815.1    GL441524    EFN64689.1    KZ288425    PBC25933.1    KK107796    QOIP01000013    EZA47651.1    RLU15580.1    GL761846    EFZ22703.1    ADTU01025845    KQ977642    KYN01034.1    KQ979352    KYN21844.1    GL887491    EGI70979.1    DS231833    EDS32190.1    GAPW01001898    JAC11700.1    GFDL01009121    JAV25924.1    GEZM01084049    JAV60816.1    KQ435726    KOX78128.1    GEZM01084050    JAV60815.1    CH477330    EAT43376.1    GEDC01023122    JAS14176.1    GEDC01028672    JAS08626.1    GECZ01001444    JAS68325.1    GECU01019131    JAS88575.1    GFDF01003660    JAV10424.1    AXCN02000593    GEBQ01008090    JAT31887.1    JH431827    AAAB01008807    EAA04060.5    APCN01000217    GANO01003294    JAB56577.1    AXCM01000671    KQ982585    KYQ54216.1    KQ976625    KYM78937.1    LJIG01002570    KRT84370.1    KQ434786    KZC05181.1    LSMT01001334    PFX12499.1    AJWK01019416    ADMH02001751    ETN61182.1    GGFK01003363    MBW36684.1    KR075857    ALE20576.1    AJVK01025173    GGFJ01006455    MBW55596.1    GGFM01002830    MBW23581.1    GAKP01018490    GAKP01018489    JAC40462.1    GAMC01013561    GAMC01013559    JAB92994.1    GDHF01013581    JAI38733.1    AAGJ04111141    AAGJ04111142    AAGJ04111143    GDAI01001688    JAI15915.1    JRES01001567    KNC21908.1    CCAG010004272    EZ423408    ADD19684.1    KA646356    AFP60985.1    CH916367    EDW02284.1    DS469664    EDO36641.1    CM000071    EAL25485.3    KQ971322    EEZ99978.2    DS235332    EEB14778.1    OUUW01000001    SPP75226.1    APGK01034587    KB740914    KB632352    ENN78378.1    ERL93255.1    KQ427255    KOF67271.1    MRZV01000121    PIK58129.1    CM000157    EDW89304.2    CH902619    EDV37858.1    CM002911    KMY92219.1    KQ414663    KOC65481.1    AE013599    AY051510    AAF59120.2    AAK92934.1    CM000362    EDX06148.1    CH480816    EDW46891.1    CH940648    EDW61601.1    PZQS01000004    PVD32042.1    KK117832    KFM71515.1    CH954177    EDV59561.1   

Proteomes

UP000218220    UP000053240    UP000053268    UP000007151    UP000005204    UP000002358    + More
UP000027135    UP000235965    UP000008237    UP000215335    UP000000311    UP000242457    UP000005203    UP000053097    UP000279307    UP000005205    UP000078542    UP000078492    UP000007755    UP000002320    UP000053105    UP000008820    UP000075886    UP000085678    UP000075882    UP000075902    UP000075903    UP000007062    UP000075840    UP000076407    UP000075881    UP000075883    UP000075884    UP000076408    UP000075809    UP000078540    UP000076502    UP000075900    UP000075920    UP000225706    UP000075885    UP000092461    UP000000673    UP000092462    UP000095300    UP000192223    UP000075880    UP000007110    UP000037069    UP000092444    UP000095301    UP000001070    UP000001593    UP000001819    UP000007266    UP000009046    UP000268350    UP000019118    UP000030742    UP000053454    UP000230750    UP000192221    UP000002282    UP000007801    UP000091820    UP000053825    UP000000803    UP000000304    UP000001292    UP000008792    UP000245119    UP000054359    UP000008711   

PRIDE

D3JSV8    H9IZF7   

Pfam

PF04670   Gtr1_RagA        + More
PF14977   FAM194

Interpro

IPR027417   P-loop_NTPase        + More
IPR006762   Gtr1_RagA       
IPR039400   RagC/D       
IPR029281   FAM194_C       

SUPFAM

SSF52540   SSF52540       

CDD

cd11385  RagC_like

ProteinModelPortal

D3JSV8   A0A2W1BEM8   A0A2A4K859   A0A1E1WRI6   A0A194RFP6   A0A194PPU8   + More
A0A212FJW8   S4PYB6   H9IZF7   K7J4B1   A0A067RSQ5   A0A2J7RG12   A0A2J7RG05   A0A2J7RG15   E2BKQ2   A0A232F829   E2APE4   A0A2A3E2G3   A0A088ASD0   A0A026VVY8   E9I9Q3   A0A158NTD3   A0A195CLT5   A0A151J9X9   F4W3Y3   B0W3P3   A0A023ERA1   A0A1Q3FEE5   A0A1Y1KMZ7   A0A0N1ITX8   A0A1Y1KMC1   Q17AT2   A0A1B6CL71   A0A1B6C546   A0A1B6H0Y2   A0A1B6INS3   A0A1L8DVF6   A0A182QCF8   A0A1B6M7G7   T1JL47   A0A1S3I7K2   A0A182KRU5   A0A182UDT4   A0A182UVR9   Q7PTD6   A0A182I3Q2   A0A182X6E7   U5EQE9   A0A182JNY2   A0A182MQM4   A0A182NHK8   A0A182XZ98   A0A151X1S2   A0A195B3U0   A0A0T6BAL1   A0A154NZZ5   A0A182RFP1   A0A182WIS2   A0A2B4R6R1   A0A182P3J1   A0A1B0GJ67   W5J9P0   A0A2M4A7C1   A0A0M4MP51   A0A1B0D5F4   A0A2M4BR90   A0A2M3Z4X6   A0A034VEC9   W8BV62   A0A0K8VIP9   A0A1I8PBQ1   A0A1W4WL25   A0A182JFE4   W4ZAA5   A0A0K8TPU2   A0A0L0BPL7   D3TPQ6   T1PC66   B4J8C5   A7SI02   Q28ZX7   D6WDF9   E0VN58   A0A3B0JPG1   N6TKD7   A0A0L8FRD0   A0A2G8LCZ1   A0A1W4WB83   B4P2P3   B3MGU0   A0A1A9X4A0   A0A0J9R963   A0A0L7R403   Q7K519   B4QFB9   B4HRK9   B4LJN3   A0A2T7PF46   A0A087U2C6   B3N8T4  

PDB

6CES     E-value=6.36236e-136,     Score=1240

KEGG

100379191    K16186 Ras-related GTP-binding protein C/D | (RefSeq) RGPC; ras-related GTP-binding protein

PATHWAY

04140    Autophagy - animal - Bombyx mori (domestic silkworm)
04150    mTOR signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0005525   GO:0032008   GO:0009267   GO:0071230   GO:1990131   GO:0005634   GO:0003924   GO:0010506   GO:0034448   GO:0005764   GO:1904263   GO:0046982   GO:0042765   GO:0006511   GO:0016021   GO:0006812   GO:0015299   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

PANTHER

PTHR11259  

Length:

384

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00491999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00940

outside

1  -  384

 

 

Pi

167.317094

Theta

163.301075

Tajima's D

0.072258

CLR

0.778391

CSRT

0.391230438478076

Interpretation

Uncertain