Silkworm Genome Informatics Database

Gene

KWMTBOMO02632

Annotation

PREDICTED:_uncharacterized_protein_LOC106717337_[Papilio_machaon]

Location

Bomo_Chr5(-):7597394-7598067 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.03 Mitochondrial Reliability : 1.259

CDS

ATGACCAAAATTTTAATTTTGAAACAAAATGAAAAAAATGCTCTAGCAAAATATGCTAATATATATGATTTGCTAGTGGAGCCATGTGGCATTTTCAATAGCCAAGAGCGCCCATATCTTGCTGCATCTCCTGATGGTGTGTTGGGCGAAGAAGCTATAATTGAAGTGAAATGTCCATACGCTAGCAGAAAACATGAAATAAATATATCAACTGTGCCTTACTTAGAACAATGTAACGGGATATTGTCTCTAAAAAAACCTGCCCATATTATTATCAAATCCAAGGACAGTTATACTGCTCAGGCAAAACATACTGCAACTTGGTCATTTACACCTACAAGGACATCAAAGTGA

Protein

MTKILILKQNEKNALAKYANIYDLLVEPCGIFNSQERPYLAASPDGVLGEEAIIEVKCPYASRKHEINISTVPYLEQCNGILSLKKPAHIIIKSKDSYTAQAKHTATWSFTPTRTSK

Uniprot

A0A1W5BJ07 A0A2S2PNI2 J9M9C6 A0A2S2NS81 A0A0J7KCJ1 A0A0M0JRZ8 + More
J9KTJ5 A0A2S2NDN1 A0A151IKZ0 J9L496 N6T251 J9L1M8 X1WN45 J9M6P6 A0A151WZM5 V5G7Y9 A0A2S2P913 A0A0J7K6N8

Pubmed

23537049

EMBL

GGMR01018315 MBY30934.1 ABLF02009142 GGMR01007319 MBY19938.1 LBMM01009681 + More
KMQ87949.1 JWZX01002423 KOO29396.1 ABLF02029627 GGMR01002630 MBY15249.1 KQ977196 KYN05017.1 ABLF02011475 APGK01055164 KB741261 ENN71573.1 ABLF02025145 ABLF02008418 ABLF02042741 ABLF02013280 ABLF02042742 KQ982634 KYQ53351.1 GALX01002231 JAB66235.1 GGMR01013263 MBY25882.1 LBMM01012607 KMQ86118.1

Proteomes

UP000007819 UP000036403 UP000078542 UP000019118 UP000075809

Pfam

PF09588   YqaJ        + More
PF09402   MSC
PF00628   PHD

Interpro

IPR007527   Znf_SWIM        + More
IPR011335   Restrct_endonuc-II-like
IPR011604   Exonuc_phg/RecB_C
IPR019080   YqaJ_viral_recombinase
IPR017482   Phage_endonuclease_put
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR034997   Man1
IPR035979   RBD_domain_sf
IPR018996   MSC
IPR041885   MAN1_winged_helix_dom
IPR001965   Znf_PHD
IPR013083   Znf_RING/FYVE/PHD
IPR019787   Znf_PHD-finger
IPR011011   Znf_FYVE_PHD

SUPFAM

SSF52980   SSF52980        + More
SSF54928   SSF54928
SSF57903   SSF57903

Gene 3D

3.90.320.10 1.10.10.1180 3.30.70.330 3.30.40.10

ProteinModelPortal

A0A1W5BJ07 A0A2S2PNI2 J9M9C6 A0A2S2NS81 A0A0J7KCJ1 A0A0M0JRZ8 + More
J9KTJ5 A0A2S2NDN1 A0A151IKZ0 J9L496 N6T251 J9L1M8 X1WN45 J9M6P6 A0A151WZM5 V5G7Y9 A0A2S2P913 A0A0J7K6N8

PDB

3SZ5 E-value=0.0388218, Score=79

KEGG

105841720 no KO assigned | (RefSeq) uncharacterized LOC105841720

GO

GO:0008270 GO:0016021 GO:0003676 GO:0046872 GO:0003677 GO:0004518 GO:0006511 GO:0006812 GO:0015299 GO:0006631 GO:0006635 GO:0006281 GO:0048384

PANTHER

PTHR13428:SF12

Length:

117

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00185

Exp number, first 60 AAs:

0.00167

Total prob of N-in:

0.35407

outside

1 - 117

Pi

432.591529

Theta

208.621677

Tajima's D

3.379787

CLR

0

CSRT

0.990850457477126

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree