Silkworm Genome Informatics Database

Gene

KWMTBOMO02624

Annotation

PREDICTED:_uncharacterized_protein_K02A2.6-like_[Amyelois_transitella]

Location

Bomo_Chr5(-):7518194-7522647 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.129

CDS

ATGTCGGTCGGGCAGTTGAAAGAATTCGCGGTAAACAGTGGAAATTGGTCCTCATATGTTGAGAGATTAGAAATGTACTTCTTGGTGAATAAAGTGACTGACGATTTAAAATTACCCACATTAATTTCCGTTATGGGTGAGGAAGCGTACGATTTATTATCGACATTAGCCAGCCCTTCGAAGCCGTCACAGTTAACTTATGCTAATGCCGTGGCGATGTTGGCAGCTCACCTGCAACCGAAGCCCTCAATCTTGGCGGAAAGATACAAGTTTCGACAACGTCGGCAGCTGAATGAGTCAATAGCTGACTACGTCACAGAATTAAAAAAATTATCAAAAAATTGTGAGTTCGGCTCGTCGCTGGATGAAAATCTGCGTGATCAAATGGTTTGTGGATTAAAGAGCGAAATCATACGGCAAAGGTTATTTGCCGAGGAGAAATTAGAATATAAGCGAGCAGTTACGTTAGCTTTGTCTTTAGAAGCTGCGGAGAGGGATGCGATTGCAGTGGAACGTACGCCAATTGAGGAGGTTAACAAAATTAACTTCAATGAATGTTCAAGATGTGGAGACAGGAGACACCAAGCAAAGGATTGCATATACAAAGACTACGTGTGCAGTTCATGTCATGAAACCGGCCATCTACGAAGAATGTGCCCCAAAAAAGGGCTTAAGAACCAGGCGGAGGCAGCCGGGGGTTCACCATGCACCGGGCGCCGGGGGAACCGGGGTGCAGGCGGCAACAGGCGATCGTGGCGCGGGCAGCGCGGTGCGGGACGAGGAGGCCGAGAGCGGGCTCCTTTGCACTTATTATACGATCAAAACAACGATGACACATACAACAACTTCAATAATGAACAGGACGGGTGTGGAGAAGAAAATGAGCCTATGTACCAAATGACATTGAGTAATTATAAACCGGTGTGTATTAAAGTTAAAGTCCAAAATTGCTTGCTCAAGATGGAGGTCGATACTGGATCGGCGTTATCTTGTATTAGCAAGAATGTTTATGATAAATATTTTTCTAAGGAGAAGTTACAGGCATGCTTATTAAATTTAAAATTTTACGATGGCTCAATCATTCGGCCTTTAGGGTTTATAAACACTATAGTGAAGTACCAAGGTGTTTCAAAAATGTTAGACTTGTATGTCATAGACAAAGGAACGACTAATCTATTGGGCCGACAATGGTTAGCTGAATTGAATATTCCTATAAAAATATCAAAACCTACGAGTTTTAAAATACAACACAGTAACTTTGTAACCGAACACGCACGAGACTATAATAAATTAATTAATGAAATTGTTTCTAGACATAAATCCTTGTTCGACGGCACATTGGGTAAATATACGGGGGGCACAGCAGAGTTAATCGTGCGGCCGGATGCGGTGCCTATCTACTGCCGCGCGCGACCGCTGCCGTATGCGCTGCGCGAGCGCGTCGATGCCGAGCTCGACGCGATGCTGGCCGCCGGCGTCATCAAACCGGTGGACCACTCCGACTGGGCCACGCCACTTGTCGTAGTACGCAAAGCGGACGGCGCTCCCTATCATCCCGCCTCTAATGGGGCCGCTGAAAATGCAGTTAAAATTTGTAAACGTGCGATTAAAAAGGCATTAAAACAGAATTTAAACGTAGATACAGCTCTGTGTAGATTTTTATTAGCCTACAGAAATACAGAACATGCAACTACCGGCGATAGTCCAGCCAATATATTACAGGGTCGAAGTCTCCGTATGAGATTAGATAATTTAAAACCAGAAAGGCAATCTCGAGTTATCGCGCAACAAGAGCGGAGCGAGCAAAACGCAGGGGGTGTGCAGCGACAACTCGAGCCGGGCACTAAGGTGTGGTATCGGGATTATCGAGGTCTGGATAAATGGGTACCTGGGACGATCCTCAAGCAATTAGGTAGTCGTGATTACTGTGTACGATCTAGTTTTGGAACCGAGAATCATAGGCACGTCGATCAGCTAAAATTAAGGGTTACAAAAAATATAGATAAAGTTGATACCTTTGCGTCGATTCGTAAAAATATAAGTCCCGAACTGATCGCGCAAAATTTAGACTTAAGAACACAATCACGTAAGTCGCTATCATTTCCCATGACAAGTGGCGAGGAACCAGTGGCGGTGGTCAACGATTCGGGGAAGAGTAGTTCACCACCAAAAAATAGCACACCGGCACAGGATGCTGTATCGCCTATTCGTGGCAGCCCTATGAGACCCGCTGTGCCGATAGACAAGGCAGCATGTAGTACTGGTGGTAAGAGTATCAATGAAAATGTGACACCCAAACGTGAACGTCCTGTAAGAATACGCAAGCCACCAGTTAGATATGGATTCGAGGAAATAGATTAA

Protein

MSVGQLKEFAVNSGNWSSYVERLEMYFLVNKVTDDLKLPTLISVMGEEAYDLLSTLASPSKPSQLTYANAVAMLAAHLQPKPSILAERYKFRQRRQLNESIADYVTELKKLSKNCEFGSSLDENLRDQMVCGLKSEIIRQRLFAEEKLEYKRAVTLALSLEAAERDAIAVERTPIEEVNKINFNECSRCGDRRHQAKDCIYKDYVCSSCHETGHLRRMCPKKGLKNQAEAAGGSPCTGRRGNRGAGGNRRSWRGQRGAGRGGRERAPLHLLYDQNNDDTYNNFNNEQDGCGEENEPMYQMTLSNYKPVCIKVKVQNCLLKMEVDTGSALSCISKNVYDKYFSKEKLQACLLNLKFYDGSIIRPLGFINTIVKYQGVSKMLDLYVIDKGTTNLLGRQWLAELNIPIKISKPTSFKIQHSNFVTEHARDYNKLINEIVSRHKSLFDGTLGKYTGGTAELIVRPDAVPIYCRARPLPYALRERVDAELDAMLAAGVIKPVDHSDWATPLVVVRKADGAPYHPASNGAAENAVKICKRAIKKALKQNLNVDTALCRFLLAYRNTEHATTGDSPANILQGRSLRMRLDNLKPERQSRVIAQQERSEQNAGGVQRQLEPGTKVWYRDYRGLDKWVPGTILKQLGSRDYCVRSSFGTENHRHVDQLKLRVTKNIDKVDTFASIRKNISPELIAQNLDLRTQSRKSLSFPMTSGEEPVAVVNDSGKSSSPPKNSTPAQDAVSPIRGSPMRPAVPIDKAACSTGGKSINENVTPKRERPVRIRKPPVRYGFEEID

Uniprot

A0A131YR50 A0A267DYU7 A0A267EMN7 A0A267FRP0 A0A267FN72 A0A267EZ06 + More
A0A267EBM2 A0A267F9L0 A0A1B6LA85 A0A085LXT4 A0A085MW71 A0A085MHF4

Pubmed

26830274 24929829

EMBL

GEDV01006828 JAP81729.1 NIVC01003024 PAA53787.1 NIVC01001899 PAA62793.1 + More
NIVC01000864 PAA75747.1 NIVC01000944 PAA74489.1 NIVC01001537 PAA66731.1 NIVC01002313 PAA58970.1 NIVC01001294 PAA69749.1 GEBQ01026572 GEBQ01019358 JAT13405.1 JAT20619.1 KL363264 KFD49780.1 KL367622 KFD61467.1 KL363192 KFD56650.1

Proteomes

UP000215902

Pfam

PF17919   RT_RNaseH_2        + More
PF17921   Integrase_H2C2
PF00077   RVP
PF00665   rve
PF00078   RVT_1

Interpro

IPR000477   RT_dom        + More
IPR036397   RNaseH_sf
IPR041588   Integrase_H2C2
IPR018061   Retropepsins
IPR021109   Peptidase_aspartic_dom_sf
IPR012337   RNaseH-like_sf
IPR001995   Peptidase_A2_cat
IPR041577   RT_RNaseH_2
IPR001584   Integrase_cat-core
IPR001878   Znf_CCHC
IPR001969   Aspartic_peptidase_AS
IPR036875   Znf_CCHC_sf

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630
SSF57756   SSF57756

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A131YR50 A0A267DYU7 A0A267EMN7 A0A267FRP0 A0A267FN72 A0A267EZ06 + More
A0A267EBM2 A0A267F9L0 A0A1B6LA85 A0A085LXT4 A0A085MW71 A0A085MHF4

KEGG

NA

GO

GO:0015074 GO:0004190 GO:0003676 GO:0008270 GO:0005215 GO:0016021 GO:0022857 GO:0005515 GO:0006631 GO:0006635 GO:0006281 GO:0048384

Length:

786

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000720000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00006

outside

1 - 786

Pi

0

Theta

0

Tajima's D

0

CLR

24.443308

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree