Gene

KWMTBOMO02617  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002661

Annotation

PREDICTED:_lipophorin_receptor_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr5(-):7158017-7181487      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 3.833

CDS

ATGTATCTACGGGTGTGTATCCTGATTTTTACATTCATCGTTATCACGGAAGCGACGTTTTACGATGACGATTACGACAGCTACACCAAGGCTTACGACTACAAAAGTGCAGAGAGCCGCACTTGCACGTCCTCCGAGTTCCGTTGCAAAACTGGAAGATGCATACCATTATCGTGGAAATGTGACAACGAAAAAGATTGTTCGGATAGTTCTGACGAGGACCCTACCGTCTGCAAAGTGGAAGCTTGCGGCCCGGAGGAGTTCACGTGCAGGGGAAAGCCTGGTGAATGTGTCCCACTCACTTGGATGTGCGACGACAATCCCGATTGCTCCGATGGATCAGATGAAAAAGCATGCAACGAGACTTGTCGTTCCGATGAGTTCACCTGTGGGAATGGGAAGTGCATTCAAATGCGATGGGTGTGCGATGGTGACGACGATTGCGGCGATGACAGCGACGAAGTGAAATGTCCAACCCCAACTTGCCAGCCGCAGTCGCACTTCTCATGTACAGATGGTCAGTGTATATCAGCGTGGTGGCACTGTGATGGTGACGTCGACTGTGCCGATGGAAGCGATGAAGTGGGATGCGTCTCCACACCTAAAGTCAGATCTCCGTGTATTTCTACCGAGTTCGAATGCAACGATCGCATAACCTGTGTGCACCGGGCCTGGGTCTGTGACGGTGACCACGATTGTCCCGATGGTGGTGACGAAGCTCTTGAACTATGTCGGGGCAATGTCACTTGCAGACTAGATCAATTCCAATGCAAGGACCATAGCTGTATTCCGGGAGCCCTCTATTGTAACGGGGTTAAGGACTGCCCTGATGGCAGCGATGAGTACAACTGCACCCGACAAAAAACTATTTGCGACAAAAGAACAGAATTTGACTGCGGAGGCGGTATGTGCATCCCATTGTCCAAAGTTTGTGATAAACATGTGGACTGCCCCAACTTTGAGGACGAGCCAAGAGACAGATGCGGTGAGAACGAATGTGAGAAGAACAACGGTGGATGCTCTCAACGTTGTGTGGATACACCAATTGGATACTATTGTGATTGTGAAAAGGGCTACAAGCTTATCGACAACAGGACTTGTGAAGATATAGACGAATGCGCGGACCCTGGATCTTGCTCACAAATATGCATTAACGAAAAAGGCACCTTCAAATGCGAATGTCATACCGGCTACGCCAGAGACCCTCGTGACAGAACCAGGTGCAAAGCAACGGAGGGGCACCCATCATTACTGTTCGCAAGAAAACACGACATTCGTAAGATAAGCCTGGACCATCATGAAATGGTGGCGATTGTGAACGACACAAAATCAGCAACGGCACTCGACTATGTCTTCAGAACCGGAATGATCTTTTGGAGCGATGTCAATGACGAGAAGATTTACAAAGCACCAATTGATGAAGGCACTCAACGTACAGTCGTCATCGGTGAACAGCTGATTACATCCGACGGCCTCGCAGTCGACTGGGTCTATAATCATCTGTATTGGACCGACACCGGGCACAACCACATCGAGCTCTCCGATTTACAAGGGAACATGAGAAAAATACTGATCAGAGATCGCCTGGAAGAACCACGTGCAATTGCACTGAATCCTTTAGAAGGTTGGATGTTCTGGACCGACTGGGGTCAAGTGCCGAAGATCGAACGTGCTGGCATGGACGGTTCACATCGGAGCACCATTGTGTCTTACGACGTAAAATGGCCCAACGGTCTGACTCTGGACCTTGTACGCCAACGAGTTTACTGGGTGGATGCGAAAATGAATACAATCTCATCGTGCAACTACGACGGGTCCGGGCGCCGGCTCATTCTCCATTCGACCGAAGTGTTGAGACACCCGTTCTCGATAACCACATTCGAAGACTGGGTCTACTGGACTGATTGGGACAAGACAGCCGTGTACCGAGCGAATAAATTCAACGGTAAAGACGTGGAAGCAATCACATCTACACACACGGTGAGTATTTAA

Protein

MYLRVCILIFTFIVITEATFYDDDYDSYTKAYDYKSAESRTCTSSEFRCKTGRCIPLSWKCDNEKDCSDSSDEDPTVCKVEACGPEEFTCRGKPGECVPLTWMCDDNPDCSDGSDEKACNETCRSDEFTCGNGKCIQMRWVCDGDDDCGDDSDEVKCPTPTCQPQSHFSCTDGQCISAWWHCDGDVDCADGSDEVGCVSTPKVRSPCISTEFECNDRITCVHRAWVCDGDHDCPDGGDEALELCRGNVTCRLDQFQCKDHSCIPGALYCNGVKDCPDGSDEYNCTRQKTICDKRTEFDCGGGMCIPLSKVCDKHVDCPNFEDEPRDRCGENECEKNNGGCSQRCVDTPIGYYCDCEKGYKLIDNRTCEDIDECADPGSCSQICINEKGTFKCECHTGYARDPRDRTRCKATEGHPSLLFARKHDIRKISLDHHEMVAIVNDTKSATALDYVFRTGMIFWSDVNDEKIYKAPIDEGTQRTVVIGEQLITSDGLAVDWVYNHLYWTDTGHNHIELSDLQGNMRKILIRDRLEEPRAIALNPLEGWMFWTDWGQVPKIERAGMDGSHRSTIVSYDVKWPNGLTLDLVRQRVYWVDAKMNTISSCNYDGSGRRLILHSTEVLRHPFSITTFEDWVYWTDWDKTAVYRANKFNGKDVEAITSTHTVSI

Uniprot

Q2PGW2   Q2PGW1   Q2PGV9   A4PBE1   H9IZH6   A0A1B0Z2Q9   + More
A0A1B0Z2Q6   Q2PGW0   Q1HI61   A0A194Q293   A0A1Z2RRF4   A0A1E1WNF2   G4V3R2   A0A194R2D8   A0A173DR70   A3KL83   A3KL84   Q4R1B4   O46131   A0A2J7R3N9   A0A2J7R3M7   A0A1Y1LSU7   A0A1Y1LRX7   A0A139WA84   E0VQJ0   A0A1L8E3G6   A0A1L8E429   A0A1J1III2   A0A023EW69   A0A0T6B2I0   D5KXW5   A0A1Q3G426   A0A1Q3G483   Q963T3   Q7YW57   A0A2A4J5C8   A0A1Q3G4D8   A0A1Q3G478   A0A2M4CVC1   A0A1Q3G465   A0A0V0G997   A0A2M4BD43   A0A2M3ZEA8   A0A2M4BDU5   A0A2M3Z2J9   A0A2M3Z2K2   A0A1Q3G435   A0A1Q3G473   Q7QK77   A0A1Q3G4A2   F5HIV0   T1PEP9   A0A1I8M8M8   T1PLU1   A0A1J1IF34   T1PP38   A0A2J7R3N4   T1PLT6   W8B062   U5ER34   A0A1L8E3H2   A0A1L8E3V1   W8BF58   A0A2M4CVB8   B3LYM0   A0A034VFQ6   A0A2M4DLP2   A0A1I8M8M3   A0A0P8YMD8   A0A1I8M8N1   A0A0P8XZK3   A0A1I8M8M5   A0A0P9AR17   A0A0P8YF07   A0A0K8UZB7   B4K4U9   A0A034VE53   A0A0Q9XBK3   A0A0Q9X1I1   A0A0R3NJ46   A0A0R3NIZ5   A0A1I8M8N3   I5APG6   A0A224X707   A0A0Q9X1I8   A0A1W4VLK6   A0A1W4VK86   A0A1W4V8H5   A0A0M5J046   A0A1W4VLM1   A0A1W4V833   A0A0R3NP71   B4K4V0   A0A0R3NJ76   I5APG7   A0A0Q9X257   A0A0Q9XE49   B3P6F8   A0A1I8M8N4  

Pubmed

16474173    19121390    12878223    26354079    28605547    27192057    + More
28004739    18362917    19820115    20566863    24945155    11378410    12917414    16449228    12364791    25315136    24495485    17994087    25348373    18057021    15632085   

EMBL

AB201471    BAE71406.1    AB201472    BAE71407.1    AB201474    BAE71409.1    + More
AB211594    BAF51965.1    BABH01014177    BABH01014178    KU936050    ANO58556.1    KU936051    ANO58557.1    AB201473    BAE71408.1    DQ482581    ABF20542.1    KQ459589    KPI97525.1    KY924787    ASA46441.1    GDQN01002688    JAT88366.1    GU433377    ADN04911.1    KQ460870    KPJ11684.1    KU355886    ANG56609.1    AM403063    CAL47125.1    AM403064    CAL47126.1    AB218869    BAE00010.1    AJ000010    CAA03855.1    NEVH01007818    PNF35442.1    PNF35444.1    GEZM01051892    JAV74646.1    GEZM01051893    JAV74645.1    KQ971466    KYB24825.1    DS235430    EEB15646.1    GFDF01000801    JAV13283.1    GFDF01000802    JAV13282.1    CVRI01000048    CRK98878.1    GAPW01000158    JAC13440.1    LJIG01016084    KRT81663.1    GU723298    ADE34167.2    GFDL01000494    JAV34551.1    GFDL01000434    JAV34611.1    AF355595    AAK72954.1    AY348869    JN411069    AAQ16410.1    AEY84776.1    NWSH01003102    PCG66946.1    GFDL01000419    JAV34626.1    GFDL01000438    JAV34607.1    GGFL01005105    MBW69283.1    GFDL01000452    JAV34593.1    GECL01002279    JAP03845.1    GGFJ01001823    MBW50964.1    GGFM01006019    MBW26770.1    GGFJ01002089    MBW51230.1    GGFM01001993    MBW22744.1    GGFM01001989    MBW22740.1    GFDL01000470    JAV34575.1    GFDL01000445    JAV34600.1    AAAB01008799    EAA03795.5    GFDL01000414    JAV34631.1    EGK96211.1    KA647257    KA649760    AFP61886.1    KA649757    KA649761    AFP64390.1    CRK98877.1    KA648951    KA649758    AFP64387.1    PNF35443.1    KA649756    KA649759    AFP64385.1    GAMC01014643    JAB91912.1    GANO01002986    JAB56885.1    GFDF01000794    JAV13290.1    GFDF01000795    JAV13289.1    GAMC01014644    JAB91911.1    GGFL01005106    MBW69284.1    CH902617    EDV42935.2    GAKP01018559    GAKP01018557    JAC40393.1    GGFL01014281    MBW78459.1    KPU79987.1    KPU79990.1    KPU79992.1    KPU79984.1    KPU79991.1    GDHF01020297    JAI32017.1    CH933806    EDW16102.1    GAKP01018560    JAC40392.1    KRG01934.1    KRG01935.1    CM000070    KRT00951.1    KRT00952.1    EIM52851.2    GFTR01008230    JAW08196.1    KRG01932.1    CP012526    ALC46956.1    KRT00949.1    EDW16103.2    KRT00948.1    EIM52852.2    KRG01941.1    KRG01939.1    CH954182    EDV53628.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000235965    UP000007266    UP000009046    + More
UP000183832    UP000218220    UP000007062    UP000095301    UP000007801    UP000009192    UP000001819    UP000192221    UP000092553    UP000008711   

PRIDE

Q2PGW2    Q2PGW1    Q2PGV9    A4PBE1    H9IZH6    Q2PGW0    + More

Pfam

PF07645   EGF_CA        + More
PF00058   Ldl_recept_b
PF00057   Ldl_recept_a
PF12662   cEGF

Interpro

IPR002172   LDrepeatLR_classA_rpt        + More
IPR036055   LDL_receptor-like_sf       
IPR000033   LDLR_classB_rpt       
IPR001881   EGF-like_Ca-bd_dom       
IPR009030   Growth_fac_rcpt_cys_sf       
IPR000742   EGF-like_dom       
IPR011042   6-blade_b-propeller_TolB-like       
IPR018097   EGF_Ca-bd_CS       
IPR013032   EGF-like_CS       
IPR023415   LDLR_class-A_CS       
IPR000152   EGF-type_Asp/Asn_hydroxyl_site       
IPR026823   cEGF       

SUPFAM

SSF57184   SSF57184        + More
SSF57424   SSF57424       

Gene 3D

2.120.10.30     4.10.400.10    

CDD

cd00112  LDLa

ProteinModelPortal

Q2PGW2   Q2PGW1   Q2PGV9   A4PBE1   H9IZH6   A0A1B0Z2Q9   + More
A0A1B0Z2Q6   Q2PGW0   Q1HI61   A0A194Q293   A0A1Z2RRF4   A0A1E1WNF2   G4V3R2   A0A194R2D8   A0A173DR70   A3KL83   A3KL84   Q4R1B4   O46131   A0A2J7R3N9   A0A2J7R3M7   A0A1Y1LSU7   A0A1Y1LRX7   A0A139WA84   E0VQJ0   A0A1L8E3G6   A0A1L8E429   A0A1J1III2   A0A023EW69   A0A0T6B2I0   D5KXW5   A0A1Q3G426   A0A1Q3G483   Q963T3   Q7YW57   A0A2A4J5C8   A0A1Q3G4D8   A0A1Q3G478   A0A2M4CVC1   A0A1Q3G465   A0A0V0G997   A0A2M4BD43   A0A2M3ZEA8   A0A2M4BDU5   A0A2M3Z2J9   A0A2M3Z2K2   A0A1Q3G435   A0A1Q3G473   Q7QK77   A0A1Q3G4A2   F5HIV0   T1PEP9   A0A1I8M8M8   T1PLU1   A0A1J1IF34   T1PP38   A0A2J7R3N4   T1PLT6   W8B062   U5ER34   A0A1L8E3H2   A0A1L8E3V1   W8BF58   A0A2M4CVB8   B3LYM0   A0A034VFQ6   A0A2M4DLP2   A0A1I8M8M3   A0A0P8YMD8   A0A1I8M8N1   A0A0P8XZK3   A0A1I8M8M5   A0A0P9AR17   A0A0P8YF07   A0A0K8UZB7   B4K4U9   A0A034VE53   A0A0Q9XBK3   A0A0Q9X1I1   A0A0R3NJ46   A0A0R3NIZ5   A0A1I8M8N3   I5APG6   A0A224X707   A0A0Q9X1I8   A0A1W4VLK6   A0A1W4VK86   A0A1W4V8H5   A0A0M5J046   A0A1W4VLM1   A0A1W4V833   A0A0R3NP71   B4K4V0   A0A0R3NJ76   I5APG7   A0A0Q9X257   A0A0Q9XE49   B3P6F8   A0A1I8M8N4  

PDB

3M0C     E-value=3.40276e-129,     Score=1184

KEGG

692500    K20053 very low-density lipoprotein receptor | (RefSeq) Lpr; lipophorin receptor

GO

GO:0016021   GO:0005509   GO:0060070   GO:0042813   GO:0017147   GO:0005515   GO:0008616   GO:0016020   GO:0043565   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

SignalP

Position:   1 - 18,         Likelihood:  0.999172

 

 

Length:

663

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.19962

Exp number, first 60 AAs:

3.19944

Total prob of N-in:

0.16763

outside

1  -  663

 

 

Pi

247.87627

Theta

182.398373

Tajima's D

1.388563

CLR

0.422838

CSRT

0.76121193940303

Interpretation

Uncertain