Silkworm Genome Informatics Database

Gene

KWMTBOMO02616

Pre Gene Modal

BGIBMGA002662

Annotation

Very_low-density_lipoprotein_receptor_[Papilio_xuthus]

Location

Bomo_Chr5(-):7142237-7154267 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 3.081

CDS

ATGTTGAAAATACTCCGAGAAGGAATCGTCCTTCTCGCAAAGGAAGCACACGAAGCCTGGAAAACAGAGCAAGCCGAGACCGCTGAAGAGACTGAGACCGTAACGGAAAAAGATCCAACGACCGATTCAGAAAAAACTGAACCAATGCCGGTCTACTGGGAAAGCGATAAGAAGGAACTGAACAACAATAATCAGCAGTTTATCGATTTATATTTGGAAGACGCATCTCTGGGCCGAATACCGGACACAACTGAGAAACCAGTCATAGAATCTCATTTTAAATATGCCAAAGTATTTCAGTTGCCACTGAAAAATATAATTTTTGATGGTGTACCAGAAACACCAAAAGTCGGAACAGAAATCTCAAACAGCGGTCGCGATGCCGGAGTGGTCGCCGGTATCGTGGTAGCAGTGATATCTGGAGTTTTATTATTGGCTGCAGTGATCGCAGGTGTTATGTACAGACACTACGTACATCATAACGTTACATCGATGAACTTCGACAACCCGGTCTACCGTAAGACAACAGAAGACCAATTCGCTTTGGAGAAAAATGGCTACGCACCGGGAAGCAAGCTGTACCCGAGCACCGTGGGGGAAGAGGCCCAAGAACCACTCAATAAGCCGAATACAGAATTCGTATAG

Protein

MLKILREGIVLLAKEAHEAWKTEQAETAEETETVTEKDPTTDSEKTEPMPVYWESDKKELNNNNQQFIDLYLEDASLGRIPDTTEKPVIESHFKYAKVFQLPLKNIIFDGVPETPKVGTEISNSGRDAGVVAGIVVAVISGVLLLAAVIAGVMYRHYVHHNVTSMNFDNPVYRKTTEDQFALEKNGYAPGSKLYPSTVGEEAQEPLNKPNTEFV

Uniprot

H9IZH7 A0A2A4J472 A0A2H1X341 A0A0L7LIF9 A0A194Q293 A0A194R2D8 + More
A0A1E1W633 A0A336MHQ5 A0A336MRA1

Pubmed

19121390 26227816 26354079

EMBL

BABH01014179 NWSH01003102 PCG66947.1 ODYU01013062 SOQ59725.1 JTDY01001046 + More
KOB75021.1 KQ459589 KPI97525.1 KQ460870 KPJ11684.1 GDQN01008624 GDQN01002627 JAT82430.1 JAT88427.1 UFQT01001012 SSX28489.1 SSX28488.1

Proteomes

UP000005204 UP000218220 UP000037510 UP000053268 UP000053240

PRIDE

H9IZH7

Pfam

PF00057   Ldl_recept_a        + More
PF07645   EGF_CA
PF00058   Ldl_recept_b

Interpro

IPR013032   EGF-like_CS        + More
IPR018097   EGF_Ca-bd_CS
IPR011042   6-blade_b-propeller_TolB-like
IPR000742   EGF-like_dom
IPR000152   EGF-type_Asp/Asn_hydroxyl_site
IPR023415   LDLR_class-A_CS
IPR001881   EGF-like_Ca-bd_dom
IPR000033   LDLR_classB_rpt
IPR002172   LDrepeatLR_classA_rpt
IPR036055   LDL_receptor-like_sf
IPR009030   Growth_fac_rcpt_cys_sf

SUPFAM

SSF57424 SSF57424 + More
SSF57184 SSF57184

Gene 3D

2.120.10.30 4.10.400.10

CDD

cd00112 LDLa

ProteinModelPortal

H9IZH7 A0A2A4J472 A0A2H1X341 A0A0L7LIF9 A0A194Q293 A0A194R2D8 + More
A0A1E1W633 A0A336MHQ5 A0A336MRA1

KEGG

692500 K20053 very low-density lipoprotein receptor | (RefSeq) Lpr; lipophorin receptor

GO

GO:0016021 GO:0005509

Length:

214

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.88641

Exp number, first 60 AAs:

0

Total prob of N-in:

0.36494

outside

1 - 129

TMhelix

130 - 152

inside

153 - 214

Pi

228.632349

Theta

176.12441

Tajima's D

0.980326

CLR

0.324845

CSRT

0.652417379131043

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics