Gene

KWMTBOMO02584  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002671

Annotation

exosc7_protein_[Bombyx_mori]

Location

Bomo_Chr5(-):6340031-6345568      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.625 Nuclear   Reliability : 1.036

CDS

ATGGCAGGACTGTTATTAAGTTCTACAGAAAAAGTTTTTATTGTTCACGGTGTACAAGAGGACTTTCGTTCCGATGGCCGATCAAACATTGACTATAGGCCCATGGAACTAGAAACAGATGTAGTGAGCCACGCAAGTGGCTCAGCGCGGCTTCGTCTAGCAAACACAGACATTTTAGTTGGCATTAAAACAGAAATAGATACACCAAAGCCAGACAAACCAGATATGGGAAAAATTGAGTTTTTTGTTGATTGCTCAGCAAATGCCACACCGGAATTCGAAGGGCGTGGTGGAGAAAATTTAGCTAGCAGCATTTCAAACACAATGCAAAGAGCATATCACTCATCACAAGCCTTTGATTTGAAGCAACTATGCATTGTAGAAGGCAAACAGTGCTGGAAACTTTATGTTGATATATTGATCTTGGAATGTGGGGGTAATTTGTTTGATGCAGTTTCATTAGCAACCAAAGCAGCTCTGTTTAACACAAGGATACCATTAGTAAAAGCCTTGTTGATGGATGGAGGAAATGTTGATTTACAACTCTCAGATGATCCTTATGATTTCAAATTTCTAGATGTTGGTTCTGCACCTTTGTTGGTAACGCTATGTAAAATAGGAGAAAAATGCGTGGTAGATCCCTCAGCTGAAGAAGAAAGCTGCAGTGTAATATCATTGATAGTTGGAATTACGGGAAACAGCAAATCTTACTGTGCAGATAAAGGAGCTTCTAACATAACTGATGTTGACATTAAATGTAGTACAATCAGTATGAACGGACCAGGCAGTTTAGCACCAAAGACATTAAAGAATGCAATTCACCAGGGCATCATTGCTGCAAAGGTACTAGATGATTCATTAGGACAAGCCTTACTGCGTGAACGACGAGAAAATGTCAACTCAATGAAAAATTCATATGGATTTCTTAAATAA

Protein

MAGLLLSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFKFLDVGSAPLLVTLCKIGEKCVVDPSAEEESCSVISLIVGITGNSKSYCADKGASNITDVDIKCSTISMNGPGSLAPKTLKNAIHQGIIAAKVLDDSLGQALLRERRENVNSMKNSYGFLK

Uniprot

H9IZI6   Q1HPI0   A0A212FLM3   A0A194R765   A0A194Q2C3   S4PLS4   + More
A0A2A4JGP3   A0A182J3L9   U5ES28   A0A182V8M8   A0A2J7R2R5   A0A1S4FBS3   A0A182IEQ6   Q7QDY7   Q178L5   A0A182GPW0   A0A182LW78   A0A0A1WYV6   A0A0K8VWM2   W8C6F5   A0A1Q3FXV9   A0A034W9Z5   A0A182NDE8   A0A182W3Y1   A0A182RJT9   A0A182QG01   A0A1B0DPE1   A0A1I8M9L1   A0A336LSB5   A0A1B6ID95   A0A1B6GX30   A0A1B6LN19   A0A1I8QEX9   A0A0L0CAS3   A0A182FBW6   A0A1B0CNM0   A0A1A9YUE2   A0A1L8DYA4   A0A1A9UI53   A0A182U895   W5JFK5   A0A182KZZ4   A0A1A9XG14   A0A1B0BGB2   A0A1B6CR00   A0A0M5JA58   A0A1A9WDX9   A0A0K8VG47   B4MQK0   D6WDU3   A0A084VUR0   B3MF61   B4KQC1   B4J9X0   A0A1W4X518   A0A1Y1LI02   B4LL43   A0A182T295   B4H534   A0A2M4BW12   A0A182PU26   Q28X67   A0A1J1IBM2   A0A182YIU7   B4P6S5   A0A1W4V0C5   A0A3B0J1P5   B3NPY6   C3XU17   A0A0L8G0U0   A0A1A9Z5L6   Q29QQ9   A0A2H8TH04   A0A210R233   A0A195E3P6   A0A0J9RDK3   A0A091DMC2   A0A154NX20   I3M6V5   A0A1Y1LHY3   F4WWV1   J9KAN7   F1SRC7   H0WHP2   A0A151I261   A0A158NKY3   A0A1U7UHG6   F7BW26   A0A2A3EI94   V9IC95   H0V4A8   E0VZC4   E9IZ26   A0A195FRU4   B2RDZ9   A0A099ZBX4   A0A2K6MET8  

Pubmed

19121390    22118469    26354079    23622113    12364791    14747013    + More
17210077    17510324    26483478    25830018    24495485    25348373    25315136    26108605    20920257    23761445    20966253    17994087    18362917    19820115    24438588    28004739    15632085    25244985    17550304    18563158    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    28812685    22936249    21719571    30723633    21347285    19892987    21993624    20566863    21282665   

EMBL

BABH01014251    DQ443422    ABF51511.1    AGBW02007743    OWR54627.1    KQ460870    + More
KPJ11711.1    KQ459589    KPI97555.1    GAIX01003880    JAA88680.1    NWSH01001649    PCG70562.1    GANO01002551    JAB57320.1    NEVH01007828    PNF35123.1    APCN01009333    AAAB01008849    EAA07136.2    CH477362    EAT42627.1    JXUM01016535    KQ560461    KXJ82305.1    AXCM01000614    GBXI01010689    JAD03603.1    GDHF01009344    JAI42970.1    GAMC01004289    JAC02267.1    GFDL01002712    JAV32333.1    GAKP01007428    JAC51524.1    AXCN02002125    AJVK01008029    UFQT01000086    UFQT01001813    SSX19469.1    SSX31887.1    GECU01022810    JAS84896.1    GECZ01002800    JAS66969.1    GEBQ01015083    JAT24894.1    JRES01000655    KNC29503.1    AJWK01020518    CCAG010004750    GFDF01002849    JAV11235.1    ADMH02001541    ETN62123.1    JXJN01013815    GEDC01021460    JAS15838.1    CP012524    ALC41306.1    GDHF01014501    JAI37813.1    CH963849    EDW74389.1    KQ971323    EEZ99918.1    ATLV01016988    KE525139    KFB41704.1    CH902619    EDV37689.1    CH933808    EDW09249.1    CH916367    EDW02557.1    GEZM01055002    JAV73263.1    CH940648    EDW61850.1    CH479210    EDW32870.1    GGFJ01008125    MBW57266.1    CM000071    EAL26449.1    CVRI01000047    CRK97679.1    CM000158    EDW92002.1    OUUW01000001    SPP74885.1    CH954179    EDV55833.1    GG666464    EEN68391.1    KQ424671    KOF70626.1    AE013599    BT024331    AAF58076.3    ABC86393.1    GFXV01001505    MBW13310.1    NEDP02000756    OWF55143.1    KQ979701    KYN19691.1    CM002911    KMY94143.1    KN122104    KFO33269.1    KQ434777    KZC04226.1    AGTP01095401    GEZM01055003    JAV73262.1    GL888413    EGI61339.1    ABLF02039764    ABLF02039778    AEMK02000085    DQIR01285683    HDC41161.1    AAQR03112320    AAQR03112321    AAQR03112322    AAQR03112323    AAQR03112324    KQ976546    KYM80939.1    ADTU01019028    KZ288253    PBC30992.1    JR038503    AEY58282.1    AAKN02012259    AAKN02012260    DS235851    EEB18730.1    GL767078    EFZ14187.1    KQ981281    KYN43325.1    AK315741    BAG38096.1    KL891119    KGL78473.1   

Proteomes

UP000005204    UP000007151    UP000053240    UP000053268    UP000218220    UP000075880    + More
UP000075903    UP000235965    UP000075840    UP000007062    UP000008820    UP000069940    UP000249989    UP000075883    UP000075884    UP000075920    UP000075900    UP000075886    UP000092462    UP000095301    UP000095300    UP000037069    UP000069272    UP000092461    UP000092444    UP000078200    UP000075902    UP000000673    UP000075882    UP000092443    UP000092460    UP000092553    UP000091820    UP000007798    UP000007266    UP000030765    UP000007801    UP000009192    UP000001070    UP000192223    UP000008792    UP000075901    UP000008744    UP000075885    UP000001819    UP000183832    UP000076408    UP000002282    UP000192221    UP000268350    UP000008711    UP000001554    UP000053454    UP000092445    UP000000803    UP000242188    UP000078492    UP000028990    UP000076502    UP000005215    UP000007755    UP000007819    UP000008227    UP000005225    UP000078540    UP000005205    UP000189704    UP000002281    UP000242457    UP000005447    UP000009046    UP000078541    UP000053641    UP000233180   

PRIDE

H9IZI6    Q1HPI0    Q29QQ9    B2RDZ9   

Pfam

PF01138   RNase_PH        + More
PF03725   RNase_PH_C
PF00179   UQ_con

Interpro

IPR015847   ExoRNase_PH_dom2        + More
IPR001247   ExoRNase_PH_dom1       
IPR027408   PNPase/RNase_PH_dom_sf       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR036345   ExoRNase_PH_dom2_sf       
IPR016135   UBQ-conjugating_enzyme/RWD       
IPR000608   UBQ-conjugat_E2       

SUPFAM

SSF54211   SSF54211        + More
SSF55666   SSF55666       
SSF54495   SSF54495       

Gene 3D

3.30.230.70     3.10.110.10    

CDD

cd00195  UBCc

ProteinModelPortal

H9IZI6   Q1HPI0   A0A212FLM3   A0A194R765   A0A194Q2C3   S4PLS4   + More
A0A2A4JGP3   A0A182J3L9   U5ES28   A0A182V8M8   A0A2J7R2R5   A0A1S4FBS3   A0A182IEQ6   Q7QDY7   Q178L5   A0A182GPW0   A0A182LW78   A0A0A1WYV6   A0A0K8VWM2   W8C6F5   A0A1Q3FXV9   A0A034W9Z5   A0A182NDE8   A0A182W3Y1   A0A182RJT9   A0A182QG01   A0A1B0DPE1   A0A1I8M9L1   A0A336LSB5   A0A1B6ID95   A0A1B6GX30   A0A1B6LN19   A0A1I8QEX9   A0A0L0CAS3   A0A182FBW6   A0A1B0CNM0   A0A1A9YUE2   A0A1L8DYA4   A0A1A9UI53   A0A182U895   W5JFK5   A0A182KZZ4   A0A1A9XG14   A0A1B0BGB2   A0A1B6CR00   A0A0M5JA58   A0A1A9WDX9   A0A0K8VG47   B4MQK0   D6WDU3   A0A084VUR0   B3MF61   B4KQC1   B4J9X0   A0A1W4X518   A0A1Y1LI02   B4LL43   A0A182T295   B4H534   A0A2M4BW12   A0A182PU26   Q28X67   A0A1J1IBM2   A0A182YIU7   B4P6S5   A0A1W4V0C5   A0A3B0J1P5   B3NPY6   C3XU17   A0A0L8G0U0   A0A1A9Z5L6   Q29QQ9   A0A2H8TH04   A0A210R233   A0A195E3P6   A0A0J9RDK3   A0A091DMC2   A0A154NX20   I3M6V5   A0A1Y1LHY3   F4WWV1   J9KAN7   F1SRC7   H0WHP2   A0A151I261   A0A158NKY3   A0A1U7UHG6   F7BW26   A0A2A3EI94   V9IC95   H0V4A8   E0VZC4   E9IZ26   A0A195FRU4   B2RDZ9   A0A099ZBX4   A0A2K6MET8  

PDB

2NN6     E-value=5.21033e-81,     Score=765

KEGG

733040    K12589 exosome complex component RRP42 | (RefSeq) exosc7 protein

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0004527   GO:0017091   GO:0034475   GO:0000177   GO:0034476   GO:0071042   GO:0000176   GO:0016075   GO:0071035   GO:0043928   GO:0000467   GO:0071028   GO:0034473   GO:0071038   GO:0034427   GO:0005737   GO:0005652   GO:0000178  

Length:

310

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00929999999999998

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00431

outside

1  -  310

 

 

Pi

205.013388

Theta

190.338006

Tajima's D

0.850105

CLR

0.070117

CSRT

0.617369131543423

Interpretation

Uncertain