Silkworm Genome Informatics Database

Gene

KWMTBOMO02583 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002620

Annotation

PREDICTED:_protein_ref(2)P_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr5(+):6330219-6338403 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.274

CDS

ATGGAGGACCAAGTTCCATTTAAAGTTTATGCATTTTTTGAGGAGAATGCTCAGCCAGAAGTAAGGAGATTTGGTGTTGAGAAAACTGTTGTGAGCAGTTTTCATTATTTGAATGCGAAACTGCAAGAAGTCTACCCAAAGCTGCGGAACAAGATTTATAAAGTATCATGGAAAGATGAGGAAGGTGATGACATTATAATTTCATCAGATGATGAAATGATGACTGCACTAGTGTCTTTGGAGAGTGGGCTGATTAAGCTCAACGTTCACTGCAAGAATCCAGATATTAGAGATGATGACTGTGAAATAGAGATAACTGCGACTACAATGTTCCCAGAAAACACGGATGGTAACACGGCAGTTCATAGCGGAGTCGTTTGCAATGTATGCAACTCTCCAGTTGTGGGTTTCCGTTACAAGTGCGCAATTTGTCATGACTACGACTTGTGCTCCAAGTGCGAGGCCGCCGGGAATCACAATGAACACTGCATGGTCCGTCTCCCCACACCGGACATGTCGCGCACCTTGATCAAGGCGGCAATTAAGAGATCCCGTCATATTTTCAAATCGGTTGCTACCCACGTCGACCAATGCCCTTACAAAAAGAATAGACGTGAACGTAGCGGGGACGCAAAACGCCGTGAAGAAACTAATGGGGTTAAAGCGGAAAGGTCAGAGCGTGAACACCAGCGTCGCTCTCGGCCGAGCTGGCTGGACACCTTCACCACATACATGAACGAGTTTACCAACCTCGTTGGAGATATTGGTCTCGATATGGATATTTCCACCGAGCACCCTCCTCCGAAGACTCCCAAGCCAACTTCCGAGTACCAAAGTACTTCTCAGGAAGTTCCTCATCCTCAAAATACTGATCAAGCTTCCGAGACACCAAAGGCTTCTGAGGCAGCCTCACTGAACCGAAATCCTTCCCAGCAGACCCCTCAATCCCAGAATGCCTCACAGAAATGCCCTCCAAACACAACTGCCACTGCTCCGCTATTCGATAATGGGGGAACTTCAGGACCCAAAATTCAATTCGATGTTAATCAAGAACCTGATCCTAAAGTGCTGGATGATCTGCAAAAGCCTCAAGCATCAGGCGAGGATTCCGACAAGCCCGCTACTAGCCAAGCTCAGGGAGGAGAGGGAGACGCTAATATTGCGATCGATGTGGATAAAACTGATGCGAAATCTGTAAACTCGGACAGTTCTGATTCTTCTGGGCAAGACAAAGAGGCTTCCTCCGACAAGGTTGACGATTGGACTATGGTGAACAAAGATTTGATGGATTCGAGTGCTAACGAGCACATCATGGATGTACCAGTGGCTCCGATTGGATTTAATCTGCCCAAAGAGTTCCAGCAGCGGGTCACTATTGGACAACTTCTGTACCCGCAACTTAATACCGCTACAGCTGTGCTGAAACCTAAAGAAGTGGAGCGTCCCAAGGAGTTCCAACCAGTCGCTGCCCAGAGACAAGACAACCAGCAGTCGACTCAGAAGCCAGCAACTGCTCCCCCAAATCCAGCAACTGCTCCTCCAAAGTCGGCGACACCTCAACCCACACCAATGCAGCAACAAGTGACTCCGCCACGATTCCACCACGCTAAGCCACATATCGATGAGGCACTGCGTCAAATGCTGGCGATGGGCTTCACTAACCAGGGGGGCTGGCTGGTCGAGCTCCTGGAGAAGAAGGACGGCAACATCGCTGCTGTACTCGACTTACTCACTCCGGTTAATCCCAAGATTTAA

Protein

MEDQVPFKVYAFFEENAQPEVRRFGVEKTVVSSFHYLNAKLQEVYPKLRNKIYKVSWKDEEGDDIIISSDDEMMTALVSLESGLIKLNVHCKNPDIRDDDCEIEITATTMFPENTDGNTAVHSGVVCNVCNSPVVGFRYKCAICHDYDLCSKCEAAGNHNEHCMVRLPTPDMSRTLIKAAIKRSRHIFKSVATHVDQCPYKKNRRERSGDAKRREETNGVKAERSEREHQRRSRPSWLDTFTTYMNEFTNLVGDIGLDMDISTEHPPPKTPKPTSEYQSTSQEVPHPQNTDQASETPKASEAASLNRNPSQQTPQSQNASQKCPPNTTATAPLFDNGGTSGPKIQFDVNQEPDPKVLDDLQKPQASGEDSDKPATSQAQGGEGDANIAIDVDKTDAKSVNSDSSDSSGQDKEASSDKVDDWTMVNKDLMDSSANEHIMDVPVAPIGFNLPKEFQQRVTIGQLLYPQLNTATAVLKPKEVERPKEFQPVAAQRQDNQQSTQKPATAPPNPATAPPKSATPQPTPMQQQVTPPRFHHAKPHIDEALRQMLAMGFTNQGGWLVELLEKKDGNIAAVLDLLTPVNPKI

Uniprot

H9IZD5 A0A2Z6E9I4 A0A2A4JFK0 A0A2A4JER1 A0A1E1W8Z5 A0A2H1WBP4 + More
A0A194PVZ5 A0A194R1Z4 A0A1E1W4T0 A0A212FLJ9 S4PKF5

Pubmed

19121390 26354079 22118469 23622113

EMBL

BABH01014251 LC054058 BBD96215.1 NWSH01001649 PCG70546.1 PCG70547.1 + More
GDQN01007667 JAT83387.1 ODYU01007592 SOQ50501.1 KQ459589 KPI97556.1 KQ460870 KPJ11712.1 GDQN01009069 JAT81985.1 AGBW02007743 OWR54628.1 GAIX01001026 JAA91534.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240 UP000007151

PRIDE

H9IZD5

Pfam

PF00564   PB1        + More
PF00569   ZZ
PF16577   UBA_5

Interpro

IPR009060   UBA-like_sf        + More
IPR000270   PB1_dom
IPR033741   SQSTM_UBA
IPR000433   Znf_ZZ
IPR015940   UBA

SUPFAM

SSF46934 SSF46934

CDD

cd14320 UBA_SQSTM

ProteinModelPortal

H9IZD5 A0A2Z6E9I4 A0A2A4JFK0 A0A2A4JER1 A0A1E1W8Z5 A0A2H1WBP4 + More
A0A194PVZ5 A0A194R1Z4 A0A1E1W4T0 A0A212FLJ9 S4PKF5

PDB

6MJ7 E-value=6.38903e-13, Score=181

KEGG

101736823 K14381 sequestosome 1 | (RefSeq) sequestosome-1

PATHWAY

04137 Mitophagy - animal - Bombyx mori (domestic silkworm)

GO

GO:0008270 GO:0005515 GO:0006355 GO:0043565 GO:0006631 GO:0006635 GO:0006281 GO:0048384

Length:

584

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00167

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00069

outside

1 - 584

Pi

314.169002

Theta

229.971596

Tajima's D

1.24787

CLR

0.152914

CSRT

0.72056397180141

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
28556443	IQFDVNQEPDPK	100.00	4e-05
26822097	IFGQGIPGGCPIASSSK	100.00	0.003
28467696	VYAENIYGR	100.00	0.003
26280517	SVAGIDKPISR	100.00	0.008

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics