Silkworm Genome Informatics Database

Gene

KWMTBOMO02582

Pre Gene Modal

BGIBMGA002619

Annotation

PREDICTED:_uncharacterized_protein_LOC106714380_[Papilio_machaon]

Location

Bomo_Chr5(+):6322969-6325828 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.174 Nuclear Reliability : 2.202

CDS

ATGACTGAGCTGTCACGAGAAATTGGCGAAATTTGGTCAAGATTATTCGACCACCGTCCATTTCTGAATGGAGAGATAAAGTATATGCTGAAAGAGTTTGAGGAAAAGAGAGGCGATCGAGAAGTTGAAAACCTATTTAAAATCTTAGAAAAAATTACTGAAATCAAAGATAATGAATCAGAACGTATTAGAAAAAGTGGCCATAATGCATTACCAGTACTGAGTGAAAAACTTGAACAGGCCTTGAATTTATGTGAAGAATTGGAAAAAGATTATCTTGAAACACAAAAGGTTTGCCAGAAGCAAATAAAAAGTAACCAAGAATTGAGAAAAAGAGAATGGGACAAGTTTATTGATGATATGAACTTTAAGTGCCAAAGGATCGATAACGCTTTTGAGGAAAAAGAAGAAGAATTGAGAGATCTGATTTATCCAACAAATGGCTTTTTGGAATATATTAAAGAAATCAAAGATGACAAAGTACCAGAAAACATATTGAAATTAAAAAATGGAAGTGACTATGAAACAAAATGTGATGTAAAAGATTTTGATTATTTTGCTAAGACTGTGAACTTAACCAATGAAGATATTGAACTACTAAGGACTATAAAGAAAACAATATCAAGAGGTTCTGCTGTGAAAATAAATAAAACAGAAATAGAGCCTGAGTTTGTTGAACATGATAAAATAAAAACAAATAAAACTAAATCAATTTCAAAAAACGTCACTGACAATTATGAGAAGCTCACAGATAAAAAAGAAAGTATTGAAAATTCTAAATCAAGTAATAATACAATAGGTAATGATAGTGAAGCTGATAAAAATAAAGGAACATATTTAACAACTTCAGATGTCTATTGGTTATATCAGCATCTTCAACAAAGGAGGATTAATGGGGAAACTGTTCCATACCTACATGAACTTTTAGAAGGAGCTACAATTGAAATGCCTGGAAATAAAGTACTTAAGAGAAATCCTGTTTTAGAAGCAAGATGTGTGAAACTTAGAGCTCAGCAGGAAGCAAGAGAATACAGAAAAATGACTAAAGGAGTAGATAATGTTAGAATGAGATTTCCAGAAGACAGTATTTCCTATCAATTGAAACAGGTAAATCGACAATTGATTGCTATTGGACAGTTCATTATTTCAATATTTGCTGGATTTCTCTTTGGGTTCAAAGGTGTTGAATGGATGATTGGCAGTTTAGATTTTGGATTTCGCCTTCTTCTCGGTGTTATGTGTGCATTAGTAATAGCACTAGCAGAAATATATTTCTTAGCTAAAAAACTTAATGAAGAACTGAATATACCTGAAACTGTTCAATTAGGTGGACCTCCAAAGTTTGTGGATGCAAAGAAAAATGAATATTTAGTCAAAGAGCCAAAAAAATCGACAGATAAGGAACATCAAGAGTAA

Protein

MTELSREIGEIWSRLFDHRPFLNGEIKYMLKEFEEKRGDREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKREWDKFIDDMNFKCQRIDNAFEEKEEELRDLIYPTNGFLEYIKEIKDDKVPENILKLKNGSDYETKCDVKDFDYFAKTVNLTNEDIELLRTIKKTISRGSAVKINKTEIEPEFVEHDKIKTNKTKSISKNVTDNYEKLTDKKESIENSKSSNNTIGNDSEADKNKGTYLTTSDVYWLYQHLQQRRINGETVPYLHELLEGATIEMPGNKVLKRNPVLEARCVKLRAQQEAREYRKMTKGVDNVRMRFPEDSISYQLKQVNRQLIAIGQFIISIFAGFLFGFKGVEWMIGSLDFGFRLLLGVMCALVIALAEIYFLAKKLNEELNIPETVQLGGPPKFVDAKKNEYLVKEPKKSTDKEHQE

Uniprot

A0A2A4JFG3 A0A2H1WBR5 S4PS72 D6W8A4

Pubmed

23622113 18362917 19820115

EMBL

NWSH01001649 PCG70549.1 ODYU01007592 SOQ50500.1 GAIX01000200 JAA92360.1 + More
KQ971307 EFA10919.1

Proteomes

UP000218220 UP000007266

Pfam

PF11712 Vma12 + More
PF14942 Muted

Interpro

IPR021013 ATPase_Vma12 + More
IPR017243 Bloc1s5

ProteinModelPortal

A0A2A4JFG3 A0A2H1WBR5 S4PS72 D6W8A4

KEGG

101737171 K20187 biogenesis of lysosome-related organelles complex 1 subunit 5 | (RefSeq) biogenesis of lysoso

GO

GO:0070072 GO:0016021 GO:0030133 GO:0031083 GO:0006355 GO:0008270 GO:0043565 GO:0005515 GO:0006631 GO:0006635 GO:0006281 GO:0048384

PANTHER

PTHR31394

Length:

471

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

42.58038

Exp number, first 60 AAs:

0

Total prob of N-in:

0.09529

outside

1 - 374

TMhelix

375 - 392

inside

393 - 403

TMhelix

404 - 426

outside

427 - 471

Pi

362.638325

Theta

235.795996

Tajima's D

1.606655

CLR

0

CSRT

0.809709514524274

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics