Silkworm Genome Informatics Database

Gene

KWMTBOMO02579 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002618

Annotation

PREDICTED:_uncharacterized_protein_LOC106124291_[Papilio_xuthus]

Location

Bomo_Chr5(+):6243259-6250785 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.325

CDS

ATGGGGGCAAGGTCCCGGGAGTTACTACTGCTCCTGGCAGCATGCGCGCTGGTATTCGGCGAATCTATCAATAAAACCGTCAAGAAAGACAAAGACGCCGACAACTTATTGGATCAATATGAGGATTACGAACCCGCGGAATACCAAGAGGTTTTGTACAACGAGGACAGGCCCTGTCCCAGAGACTGCATATGCTCTGTATCTCAGGGATACAGACAAGCCAAGTGCAGCTTCCTCGAAATCGGTACACAAAAGTTCGGCGATGATATCCTTGATCTCGTGGTCGAAAACGCAGATCCCCGCTACCCGATTAATCTAGACGACTTCATGTTCAAAAAACTCGGACTTCACCAGGTTGCTACTGTAAAAATCGTGAACAGCACGATTGGTTATATCGCCCCCAATGCTTTCCATGGTGTCCATGACCTTTACGCAGTCAACCTATCCAACAACAACCTAAAGAGCCTTCATCCTGAGACGTTTGCGAACAATAAGAAGCTGTTACTTCTAACGCTTTCAAACAATCCCCTCAAATTTCCTGCAGCTGGGTCCGAAAATTACTTCTTGAACGCTTCCTCTGTACAAGAGCTTGATGTTTCATACTGTAACATGCAGTACATCACGGCAAATACTTTCAAAAATATGCCTGGTTTGATGTACTTGAATGTTGCCGGTAACAACCTATCCGATATGGATCCAGATACATTCAAAAAATTACTCGATCTCGAAGAGTTAGATCTCCGCAACAATCACATTAAATCGCTCCCCGACGACATTTTCTCGGAAAACACCGAACTAGCAACACTGCATTTACTGAAAAATCCTATTGATACAGTGTATGGCCTCCAAATATCCGATTTGCTTACACTTAATGCGGGACAAACAAACATTAAGTTTGTTGGGCCATCAATGTTCAACGGTATGGGTCTTATTGCTAATCTCAACCTCAGCGGAAATAGTATCGAGAAAATCCATAACCAGGCATTCCACAAATTAGTAGAACTCAATTATTTAGATTTGTCGTATAATAATTTGGATTACATGTCCAGTATTCTTATCAAAGAAAACATCGAACTTGACATCTTCAAAATTTCAAACAACCCACGGCTAAAACATTTACCGGTTGAAGGTTTCACATGCTCATCTGATCAGTTTAATATTTACTTCTTTGGCGCATCTGACTGTGGTCTAGAAGAGATTTACGATAATTCTCTGAAAACATTCTCTGCTCTGTCAATAATTCATCTATCGAATAATAAATTAACTACCATAAACAATACCGTTTTCTCGCACTGCCCTAAATTAATGGAAATCAATCTTGCTTATAATATGCTCACCACTTTAGATCCTAAGCTCTTCGCAAAGAACAATGAACTTGCAAAGCTTAATTTACAAGGTAACCCTCTTAAAGTACTTTCTGCGGAAATTTTTGTCCACACTCCGGCCATGATTTGGCTAGACATGAGTCACGCTGAATTAACCTCTTTGTGGAAAGTAGATAAAAATCACCCACTGACAGTTCTTATCAATTTACTATTCTTGAATGTATCCCACAATAGAATTACGGAAATTAAACAAAACGAATTAGATAATTTGAACAAACTACGTACTTTAGACATTACCAACAATCCGTTGGCCTGCAGCCGAGACTTTGAAAACCTCATGACATGGCTGAACAACCACACAGTGTTGCCTACTGGTAACTCTGCCAACGTCGCCAATATGGCTAGAGATGGAAAAGATGATGATGCCACTTACAGCTGGGATTTCCTGACTATCAAGACTTGTGGAACTACAGTTATTTCCCATCCTGTTGAACCATTATCGGCTGTATCTGACGAAGAAATTTGGGAAAGAATCGACAAGGACACTGAGGGTAATTTCGATTTGAAGAACACCTTAGATGACGGTAAAATTCCTGATGATACCAACGCTTCTGCTGACAGCAAACTAATAATTGATAGCACTGATGAAGAATCAGATGACGTTGATCCCGATGATGATGAAGACGAGGGCGACGATGATGACGACGAAGACGACTCTGGCGAAGATTACGAGAATGATGACATAGATCTTAAATATGAGCTCATCAACAAAACGGACTCGAAATCTGAGAATACAAAGAAATCTGAACAACAGGCCACAGAGAAAGTTAAGATTGACATCAAGCTCTTAGACTTATACGAAAATTCTGAGCCAGACGTCTATGTACGAACATCGACCGAGGAAGAACACGGCCATTACAGCTACTTGTGGCCAATATCCATTGCCATCCTCGGAGCGCTTTTGTTGCTAATCGTTATCGCTAAGGTCGTCATGATGACGTGTAAATCAAGAACCAGGCAGCTCAGATACAACAGTGCCATTATTGCAGCGATGAGTCAACCCGGCCGCACCAAAAAGGACTGCGGCTTGGTATACCAGCAGTTGTCCGAAGACCTCACAGGTCCGGCCACTCCAAAACTAAGCCGATATGCTCCACTTCACAGCGTCACTGTCAATGCATCCAACATGTCCTATGAGAGCAGTCCCTTCCACCACAACAACATCGTGCCAGAAGCAGTGTGA

Protein

MGARSRELLLLLAACALVFGESINKTVKKDKDADNLLDQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLVVENADPRYPINLDDFMFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFANNKKLLLLTLSNNPLKFPAAGSENYFLNASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDMDPDTFKKLLDLEELDLRNNHIKSLPDDIFSENTELATLHLLKNPIDTVYGLQISDLLTLNAGQTNIKFVGPSMFNGMGLIANLNLSGNSIEKIHNQAFHKLVELNYLDLSYNNLDYMSSILIKENIELDIFKISNNPRLKHLPVEGFTCSSDQFNIYFFGASDCGLEEIYDNSLKTFSALSIIHLSNNKLTTINNTVFSHCPKLMEINLAYNMLTTLDPKLFAKNNELAKLNLQGNPLKVLSAEIFVHTPAMIWLDMSHAELTSLWKVDKNHPLTVLINLLFLNVSHNRITEIKQNELDNLNKLRTLDITNNPLACSRDFENLMTWLNNHTVLPTGNSANVANMARDGKDDDATYSWDFLTIKTCGTTVISHPVEPLSAVSDEEIWERIDKDTEGNFDLKNTLDDGKIPDDTNASADSKLIIDSTDEESDDVDPDDDEDEGDDDDDEDDSGEDYENDDIDLKYELINKTDSKSENTKKSEQQATEKVKIDIKLLDLYENSEPDVYVRTSTEEEHGHYSYLWPISIAILGALLLLIVIAKVVMMTCKSRTRQLRYNSAIIAAMSQPGRTKKDCGLVYQQLSEDLTGPATPKLSRYAPLHSVTVNASNMSYESSPFHHNNIVPEAV

Uniprot

H9IZD3 A0A194PW04 A0A212FLM4 A0A2H1WAL2 A0A2A4J9A8 S4P679 + More
A0A1E1WLN2 A0A0L7KXU1 A0A3G1T193 A0A3B0J5L7 A0A0L0BSE9 B4GHJ0 Q28XT2 Q9NJG7

Pubmed

19121390 26354079 22118469 23622113 26227816 26108605 + More
17994087 15632085 11180815

EMBL

BABH01014261 BABH01014262 KQ459589 KPI97561.1 AGBW02007743 OWR54632.1 + More
ODYU01007382 SOQ50093.1 NWSH01002374 PCG68439.1 GAIX01005179 JAA87381.1 GDQN01006535 GDQN01003121 JAT84519.1 JAT87933.1 JTDY01004694 KOB67866.1 MG846897 AXY94749.1 OUUW01000001 SPP75083.1 JRES01001423 KNC23005.1 CH479183 EDW35960.1 CM000071 EAL26234.2 AF151684 AAF67245.1

Proteomes

UP000005204 UP000053268 UP000007151 UP000218220 UP000037510 UP000268350 + More
UP000037069 UP000008744 UP000001819

PRIDE

H9IZD3

Pfam

PF00560   LRR_1        + More
PF13855   LRR_8
PF12799   LRR_4
PF13306   LRR_5

Interpro

IPR032675   LRR_dom_sf        + More
IPR001611   Leu-rich_rpt
IPR003591   Leu-rich_rpt_typical-subtyp
IPR025875   Leu-rich_rpt_4
IPR026906   LRR_5

Gene 3D

3.80.10.10

ProteinModelPortal

H9IZD3 A0A194PW04 A0A212FLM4 A0A2H1WAL2 A0A2A4J9A8 S4P679 + More
A0A1E1WLN2 A0A0L7KXU1 A0A3G1T193 A0A3B0J5L7 A0A0L0BSE9 B4GHJ0 Q28XT2 Q9NJG7

PDB

4LXS E-value=1.0843e-13, Score=189

KEGG

NA

GO

GO:0016021 GO:0048749 GO:0007185 GO:0005886 GO:0005515 GO:0008270 GO:0006470 GO:0008138 GO:0004725 GO:0006172 GO:0006631 GO:0006635 GO:0006281 GO:0048384

SignalP

Position: 1 - 20, Likelihood: 0.982459

Length:

855

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.72632

Exp number, first 60 AAs:

0.25013

Total prob of N-in:

0.01446

outside

1 - 749

TMhelix

750 - 772

inside

773 - 855

Pi

277.716852

Theta

36.534405

Tajima's D

0.583846

CLR

0.736886

CSRT

0.540972951352432

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics