SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02577  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA002675
Annotation
PREDICTED:_uncharacterized_protein_LOC106111905_[Papilio_polytes]
Location in the cell
Nuclear   Reliability : 3.804
 

Sequence

CDS
ATGATGACGTGGACTCCTGTTTTCTCGTGTTTCCTGGCGGTGTCACTACTAGTGGCTCCCAGCTTAGCAACCGTCTGTCCCGAAAGCTGCGTTTGCAGTACTACTCGCGATGGCTTACATCGTGCCACGTGCAGTAACCTCGCCGAGCTTTATAAGTTCACCCTCCGCCAAAAGCACCATAATATTAATATTTTAGATCTTTCCCACAACAACATTACGAAATTGAATCATGAGTTGGATCGGCTTACCGAAGTTGTCACGCTTGATCTGTCTACCAATGGTATTCAGAACTTGAACAAATTCTTACATAATGCAAAAAAATTGGTGCACTTAAACTTAGCAAACAACAGGATAAAAGAACTCGCCATGTCGCATTTACCGGCTAGTGTTAGCTCATTGGATTTGACCAACAATCTTTTAAGAGATGTTCCTTCAGATCTTGGGCATTTGACAAGTTTGGAACATTTGGAATTAGAAGGAAACCCATTAGACTGTTCTTGTGAAAACATTTTGCTTCGAGACCGATTAATCATAGCAAACGTAGTGATCGACAATGTAAAATGTTCTTTACCGACCAAACTAAAAGGCCAGTCTTGGCTCGAGTTAAAAACGAAAGATATTTGTAAATCAGTAAAAACTGAACCTCAGTTCTTAGATATGATGATGGGGGATCAAGCTATTGATGCTGCACAAGTTGGTGAAGAATCGAATGCATTAAAATCAATGCCTCTAGTAGCAAAAAGTGATTTAGATGATGGTAAAGTTATACAGAGTGGAGATGTTGGTGACGACGATGATAACCTTTTATTCCTCAAAGTCGGACAGTCTAAAACAGCTGCACCGTCATCCTCTTTGAACGACATAGAGGGTTCCGGAGAAGGGGAAAGTACTACACTATCTGACTTTTTGATAGAACCAAAAATGAATCCTAGATTTCATGCAGACCTATTCACTGCCGATGAAATCCTACCAGCTGATAATATTCAAACCACTGAAGATCCAATAGATGGATCCGGAGAAGGTTCTGGAGCTATCCCCTTGGACTTTGGTTCCGATTTGTTTGAAGAAGAAACGACGACAGTTGTGTACGAAGAATTAAACACGCATCCTGTGCGCAGAATTTTCGAAGATGATTTTAATACATCTACTACTGAATATCCCATCCCTAAACCACCTGCAATATTTCAAGGGAATGACGATTGGGATAACAAAGGCGAACCGTCAAGCTCTACAGAAAAAACTACATCATCTACAGCCCGTGATACTACCGTATCTGAGCAAATAAGAGTAACTGCGGTATCAGAAGTTCTTGGACAGAGACCAGCTGATAAAGACGAGACCCCTACTCCACATAAAACCGGAACTTATGTTTGCATAGCCATCATTGTAATGTTGCTTGTAAGTTTGATAGGTTTTGCAATAATTAAAGGACAAATGAGAAAAAGAAGAGACAGGAGACTATTACGCCAACAAAAGAGAGACGTTGAAAAAGCTTCGAAGGAAATGGTAGACATGAACAAATCTTTACTCGGTAAACCGGCTGTTATTGAAAATCCCATAGAAAAGAAAGTGAATGGTAAATATGAATTGGTACCTACTCACGAATTGCACCAAAAGAAAAGCGAAAATGGTGACGTTGCCAATGGAATTAACCACGCTGAAAATAATGATCCAAAAACCGAGAGTCCTAGAGATACAAATCAAAATAGGAGTAGTTCGAAAGATAATAATCTTGCAAAGACTCCATCGCAACAGGAAACTTCATTCGAATCAGCTCCGGCTTCTCCTGATTCACGTAAAGACAACAATTCACTGTCGAGTGAAGACTTATTTGTACCGTTAAATGACGATGAAAACCCAAGATTAAATGGCACTAATGACTCTGATACGTCCCAGCCGCTTATAAACGGAGATCAAAATACGGATTCAGATTTCTTATCTCCGTCGCGTGAATACGTGCCAGTATATTCGCCAGACATGGGAAGGGTTCGCATAAAGATGACTGAGACACCGAAGCCCAAAACACCTGTTCTAGTCACCAGGAGTAGGTCGAACGCTGGAGACATCATAATAACTCCATCTGAAAATTCAAACGCGCGTAAATCGACCACTTGA
Protein
MMTWTPVFSCFLAVSLLVAPSLATVCPESCVCSTTRDGLHRATCSNLAELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKELAMSHLPASVSSLDLTNNLLRDVPSDLGHLTSLEHLELEGNPLDCSCENILLRDRLIIANVVIDNVKCSLPTKLKGQSWLELKTKDICKSVKTEPQFLDMMMGDQAIDAAQVGEESNALKSMPLVAKSDLDDGKVIQSGDVGDDDDNLLFLKVGQSKTAAPSSSLNDIEGSGEGESTTLSDFLIEPKMNPRFHADLFTADEILPADNIQTTEDPIDGSGEGSGAIPLDFGSDLFEEETTTVVYEELNTHPVRRIFEDDFNTSTTEYPIPKPPAIFQGNDDWDNKGEPSSSTEKTTSSTARDTTVSEQIRVTAVSEVLGQRPADKDETPTPHKTGTYVCIAIIVMLLVSLIGFAIIKGQMRKRRDRRLLRQQKRDVEKASKEMVDMNKSLLGKPAVIENPIEKKVNGKYELVPTHELHQKKSENGDVANGINHAENNDPKTESPRDTNQNRSSSKDNNLAKTPSQQETSFESAPASPDSRKDNNSLSSEDLFVPLNDDENPRLNGTNDSDTSQPLINGDQNTDSDFLSPSREYVPVYSPDMGRVRIKMTETPKPKTPVLVTRSRSNAGDIIITPSENSNARKSTT

Summary

Pfam
PF13855   LRR_8        + More
PF13516   LRR_6
Interpro
IPR001611   Leu-rich_rpt        + More
IPR032675   LRR_dom_sf       
IPR000483   Cys-rich_flank_reg_C       
Gene 3D
PDB
4Y61     E-value=3.28795e-07,     Score=133

Ontologies

Topology

SignalP
Position:   1 - 23,         Likelihood:  0.998432
 
 
Length:
704
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
29.41151
Exp number, first 60 AAs:
6.74327
Total prob of N-in:
0.28899
outside
1  -  452
TMhelix
453  -  475
inside
476  -  704
 
 

Population Genetic Test Statistics

Pi
273.375284
Theta
193.92727
Tajima's D
0.550512
CLR
1.58221
CSRT
0.528573571321434
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
27530593 KALTDKSESSSFEDLAAAAAEEIEEAKL 100.00 3e-09
26280517 TPSCAWCFATDFNGPR 100.00 1e-05
28467696 TPSPIPPSWR 100.00 1e-05
26822097 EYVPVYSPDMGR 100.00 3e-04
26280517 SIQEIQVMIGATPQDR 100.00 3e-04
28467696 SNACIVVYPPGEPNTICQR 100.00 3e-04
26822097 SATPQPTPMQQQVTPPR 100.00 0.011
26280517 EYAHDIGFK 100.00 0.011
25044914 EYTIPFISDADK 100.00 0.011
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