SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02567
Pre Gene Modal
BGIBMGA002611
Annotation
PREDICTED:_lysine-specific_demethylase_6A_isoform_X2_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.413 Nuclear   Reliability : 1.694
 

Sequence

CDS
ATGGCTCTGTACGTGTCGCCGGGGTTCTCTCGGGCCGCGGACGCGCACCTTCGGCTGGCGCTCATGTTCAAAGCGCGCCGGCACTGGGCCGCCGCGGCGGTTCACTTCAGGAGGGCTCGCCTCGCGCCGCACCAAGACGCCACCTTCACCCGCCTCGAGCTCAGCTTCCACGCCGCCCACCTGCTGGAGGCGCGGGGCTTGAGGAAGGCCGCCAGGGACGCCTACGAACGCCTCCTCGAGGAACCGAAACTCTCGTCGACACTCAAAGCTGATGTCTGCAGACAATTAGGGTGGTTGTACCATCGGTGCGTGTCTCTGGGCGAGCCCGCAGCGAGGGCACGTGCGGCTATATGGTGTCTCCAACGAGCCGTAGCCGCCGAGCCGGAGTCTGGTGCGGGCCTATACCTTTTAGGGAGGTGTTTCGCTGCTCAAGGCAAAGTCCACGACGCCTTCATCGCGTACAGGAACTCTGTCGAGAAGTCGGAAGGGAACGCCGATACTTGGTGCTCGATCGGTGTCCTATACCAGCAACAGAATCAGCCAATGGACGCGCTCCAAGCGTACATATGTGCCGTGCAGCTTGACAAGGGACATTCGGCGGCGTGGACGAACTTAGGGAGTCTCTATGAGAGCTGTCAGATGCCTCGTGATGCATTCGCGTGCTACACCAATGGAGGTTCGGCCGCGACCGCCAACAACGCGGCGTTGAGACAGCGACTGGCGTTCTTGAAAGCGCACCTGGCACTAGCACCTATGCCCTCAATCACCGGCAAGCGACGTCAGCTGCCTTCCATCGAGGAGGCCTGGAACCTTCCGATCTCCGCGGAGATGTCGTCCCGGGCGCCCAAGTCCGCGCCGCCCCCCTACCCGGGAAAGCGGGACGAGCTCTCGCAACACCAGCTACACACGCTGCACTATCTGCAGAAAAACTCCCACAACCTGACCCCTCAGCAACAAGCGTTGATGCAGCAGCTCTTATCGCAGTACCGTCTCGCTCAGGCAGCAAAAACTCGTGCGGTGACGAAACAGGAAGGTAGCGGCAGCACGACCGGCAGCGACACCACGGAATCGCTTGCCGAAGATTTACTGAAGAAGTTCTCTGACGTACAGCCTGAGATCAAGAAGGAACCGATTAGCTCCGATACAAACACTAGCAACTCGAGCGGCAATGAGGCAGTATTATGCGGCAGACAACCCGTCGTCAAACTCGAGCCGCTCAAGACGGATCCACTTAAACCCGTTACATTCCACATCGGTATGAACTCCAAACAGATTCTCGAGGCTTGCAAAGATAATGCTGGTCCCGCGACCTCTTGGTCGGTACTCGGAGACGGGTGCGGTCCCCCCGAGCCTCCCTCCGTCCCCCCACCGCGTCTCTCCCCCGAACAACTCGCACCCCCCGCTCCTTTCGTGTATGTAGAGTCCAAGCGCGAAGCCTTTTCGCCGCAGCTACAAGATTTCTGCCTGAAACACCCCATCGCCGTGGTGCGCGGACTCACCGCCGCTCTCAAACTCGACCTCGGACTGTTCTCGACGAAGACACTAGTGGAGGCGTGGCCCGACCACGCGGTCGAGGTGCGCACGCAACTCATGCAGTCCGCTGACGAGAACTGGGACGCGACCGGGCGCCGCCGCGTGTGGGCCTGCGCCTCGCACCGCTCCCACACCACCGTGCGCAAGTACGCGCAGTACCAGGCCGGCTCGTTCCAGGAGTCTCTGCGCGAGGAGCGGGAGCGCGCCGCCCCGCTGTCCGACTCGGACTCCGGTCCCGCCAAGCGACGCCGCGCCGCCCGCATGCTCCGCTTCGGCACCAACGTAGACCTCTCAGACGAACGCAAGTGGCGCCCGCAGCTCGCGGAGCTCCAGAAGCTTCCTGCGTTTGCGCGCGTCGCCTCCGCCGCCAACATGCTCTCCCACGTCGGACACGTCATCCTCGGCATGAACACTGTGCAGTTGTACATGAAGGTGCCCGGCAGTCGCACACCAGGACATCAAGAAAATAACAACTTTTGCTCTATCAACCTTAATATCGGCCCCGGCGACTGCGAGTGGTTCGGCGTTCCGGACGCGTACTGGGGAGGCGTGCGCGAGCTGTGCGAGAGACACGGGCTCTCGTACCTGCACGGCTCCTGGTGGCCCGACCCCGACGAGCTGCGCGCGCACGGCGTGCCCGTGTACCGCTTCACGCAGCGGCCCGGCGACCTCGTGTGGGTCAACGCGGGTTGCGTGCACTGGGTGCAGGCCACCGGCTGGTGCAACAACATCGCCTGGAACGTGGGTCCGCTGACGGCGCGCCAGTACACGCTCGCACTCGAGAGATACGAGTGGAACAAAGTGCAGAACTTTAAGTCCATAGTGCCAATGGTACACCTTACGTGGAATTTGGCGCGGAACATCCGCGTCTCGGATCCACGACTGCACCGCGCGATGCGCACGTGTCTGATGCAGACCCTCCGGGCCGCGACGGGCACGCTGAACACGGTGCGCGCGCGCGGGATGCCGATACGGTTCCACGGGCGCGCGCGCGGCGAAGCGTCGCACTACTGCGGCGCGTGCGAGCGCGAGGTGTGGCACGCGCTGCTGGTGCGCGAGCACGAGCGGCGCCACGTGGTGCACTGTCTGCAGTGCGCGCGGCGGGCCAGCCCCTCGCTGCAAGGGTTCCTGTGCCTGGAGGAGCACCACATGGACGAGCTGGCGCAGGTGTACGACGCGTTCACGCTGCACCGGCCGGCGCCGCTGGGTGCGCACGCCGCGCTGCCGCCGGACTGA
Protein
MALYVSPGFSRAADAHLRLALMFKARRHWAAAAVHFRRARLAPHQDATFTRLELSFHAAHLLEARGLRKAARDAYERLLEEPKLSSTLKADVCRQLGWLYHRCVSLGEPAARARAAIWCLQRAVAAEPESGAGLYLLGRCFAAQGKVHDAFIAYRNSVEKSEGNADTWCSIGVLYQQQNQPMDALQAYICAVQLDKGHSAAWTNLGSLYESCQMPRDAFACYTNGGSAATANNAALRQRLAFLKAHLALAPMPSITGKRRQLPSIEEAWNLPISAEMSSRAPKSAPPPYPGKRDELSQHQLHTLHYLQKNSHNLTPQQQALMQQLLSQYRLAQAAKTRAVTKQEGSGSTTGSDTTESLAEDLLKKFSDVQPEIKKEPISSDTNTSNSSGNEAVLCGRQPVVKLEPLKTDPLKPVTFHIGMNSKQILEACKDNAGPATSWSVLGDGCGPPEPPSVPPPRLSPEQLAPPAPFVYVESKREAFSPQLQDFCLKHPIAVVRGLTAALKLDLGLFSTKTLVEAWPDHAVEVRTQLMQSADENWDATGRRRVWACASHRSHTTVRKYAQYQAGSFQESLREERERAAPLSDSDSGPAKRRRAARMLRFGTNVDLSDERKWRPQLAELQKLPAFARVASAANMLSHVGHVILGMNTVQLYMKVPGSRTPGHQENNNFCSINLNIGPGDCEWFGVPDAYWGGVRELCERHGLSYLHGSWWPDPDELRAHGVPVYRFTQRPGDLVWVNAGCVHWVQATGWCNNIAWNVGPLTARQYTLALERYEWNKVQNFKSIVPMVHLTWNLARNIRVSDPRLHRAMRTCLMQTLRAATGTLNTVRARGMPIRFHGRARGEASHYCGACEREVWHALLVREHERRHVVHCLQCARRASPSLQGFLCLEEHHMDELAQVYDAFTLHRPAPLGAHAALPPD

Summary

Pfam
PF02373   JmjC        + More
PF13181   TPR_8
Interpro
IPR011990   TPR-like_helical_dom_sf        + More
IPR019734   TPR_repeat       
IPR003347   JmjC_dom       
IPR013026   TPR-contain_dom       
SUPFAM
SSF48452   SSF48452       
Gene 3D
PDB
6G8F     E-value=4.50966e-174,     Score=1573

Ontologies

Topology

Length:
922
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01932
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.00003
outside
1  -  922
 
 

Population Genetic Test Statistics

Pi
177.201231
Theta
194.824996
Tajima's D
-0.755679
CLR
0.941152
CSRT
0.183240837958102
Interpretation
Uncertain
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