Gene

KWMTBOMO02564  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002610

Annotation

39S_ribosomal_protein_L42?_mitochondrial_[Papilio_xuthus]

Location

Bomo_Chr5(+):5607653-5608064      View in EpiBrowser

Full name

Tetraspanin      

Location in the cell

Mitochondrial   Reliability : 1.734 Nuclear   Reliability : 2.11

CDS

ATGTCCTATTTAACTCGCAAAATAGCATTAATCCCAAGAGTGGCATTAAGTAGATTCTACAATAAAATAGTGATCACTGACGATGGCTCTACCATTGTAGCTCTTCATCAAGACTATGATTTTCCTTACGAGCATTCAAGAGCTTTACCAGAAGAGACAAGTAAAGATAATACAGTTTTGAAAATGACCGATTTAGATGAAGTTAAAAGAGTCTTCAATGAAATGAAACCTGAATTTGCAAGAAAACAACTATCAAACCTAACATTAACTACTGAACATCGTTGGTACCCTAGAGCTCGAGATAAAAAGGCCAAGAAAACTGAAATGAATAGACCCTATTTGTAA

Protein

MSYLTRKIALIPRVALSRFYNKIVITDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEHRWYPRARDKKAKKTEMNRPYL

Similarity

Belongs to the tetraspanin (TM4SF) family.

Uniprot

H9IZC5   A0A194PXU5   A0A194R3C2   A0A2H1X136   A0A2A4JSY9   A0A0L7LUD3   + More
D6WEX1   A0A067QZS5   A0A1Y1NDI8   V5GFY3   A0A2J7R128   B4GBA3   Q290T1   B4KWL5   A0A2P8Y3T0   T1GGI7   B4MQX6   B4IYJ3   A0A0K8VZV8   A0A034V3Z7   A0A0C9RY45   A0A1I8Q6N7   A0A1B0D1D3   B4LEB4   W8C4Y8   A0A224Y0F3   B4NX43   A0A1W4VD93   A0A0A1XFB0   A0A1B0BI75   A0A1A9YPI2   Q7K0A0   B3N6J3   B4QI84   A0A1A9UJ00   A0A1L8E074   A0A1L8DSA0   A0A1L8EA96   N6TXQ5   A0A023F1T9   B3MD19   A0A1I8MIK6   B4HMC2   A0A1A9WP45   A0A182PTN7   A0A0L0CQM6   A7UTX0   A0A182XMD0   A0A182URA3   A0A1B0G5C8   A0A182KPZ0   A0A182I264   A0A182TDK5   A0A182YEE0   A0A182SL54   A0A1B0A9C4   A0A2M3ZCZ5   A0A182KE98   A0A0T6AY84   A0A0J7K694   A0A2M3ZBH5   A0A182WLB3   A0A182M1Y1   A0A182FHL3   A0A2M4C481   A0A2M4ATL6   A0A2M4ATN8   W5J496   A0A1B6FA13   A0A0N7Z8D7   A0A0V0GB57   E9IWZ8   T1H9Z6   E2A000   A0A2M4C3F3   A0A182NJE4   A0A026WIN3   A0A084WEA1   U5EP49   A0A182R4H8   A0A1B6JN01   A0A195EII3   A0A1J1J7V2   A0A151IJY2   A0A182IWY9   A0A1B6K9T3   A0A195FAW2   E2B311   A0A232ET28   F4WWI5   A0A1B6G6G3   K7IPI5   A0A151WTC1   A0A195B0M5   A0A0P6B1Z2   A0A0P5T4H5   A0A0P5XTS2   J9K879   A0A0P5I7A3  

Pubmed

19121390    26354079    26227816    18362917    19820115    24845553    + More
28004739    17994087    15632085    29403074    25348373    24495485    17550304    25830018    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    23537049    25474469    25315136    26108605    12364791    14747013    17210077    20966253    25244985    20920257    23761445    27129103    21282665    20798317    24508170    30249741    24438588    28648823    21719571    20075255   

EMBL

BABH01014313    KQ459589    KPI97574.1    KQ460870    KPJ11735.1    ODYU01012565    + More
SOQ58968.1    NWSH01000735    PCG74510.1    JTDY01000106    KOB78831.1    KQ971318    EFA00323.1    KK853060    KDR11909.1    GEZM01005717    JAV95972.1    GALX01005577    JAB62889.1    NEVH01008214    PNF34543.1    CH479181    EDW32205.1    CM000071    EAL25281.3    CH933809    EDW19644.1    PYGN01000957    PSN38916.1    CAQQ02144694    CAQQ02144695    CH963849    EDW74515.1    CH916366    EDV97666.1    GDHF01007945    JAI44369.1    GAKP01022694    JAC36258.1    GBYB01014190    JAG83957.1    AJVK01002574    CH940647    EDW70090.1    GAMC01002099    GAMC01002097    JAC04459.1    GFTR01002006    JAW14420.1    CM000157    EDW89604.1    GBXI01004208    JAD10084.1    JXJN01014858    AE013599    AY070620    AAF58852.1    AAL48091.1    ADV37147.1    CH954177    EDV58162.1    CM000362    CM002911    EDX06444.1    KMY92667.1    GFDF01001993    JAV12091.1    GFDF01004830    JAV09254.1    GFDG01003306    JAV15493.1    APGK01050872    KB741178    KB632256    ENN73161.1    ERL90673.1    GBBI01003424    JAC15288.1    CH902619    EDV36334.1    CH480816    EDW47199.1    JRES01000160    KNC33739.1    AAAB01008960    EDO63744.1    CCAG010003857    APCN01000123    GGFM01005614    MBW26365.1    LJIG01022533    KRT80076.1    LBMM01012762    KMQ86008.1    GGFM01005069    MBW25820.1    AXCM01002346    GGFJ01010667    MBW59808.1    GGFK01010815    MBW44136.1    GGFK01010816    MBW44137.1    ADMH02002096    ETN59252.1    GECZ01022683    JAS47086.1    GDKW01003635    JAI52960.1    GECL01001040    JAP05084.1    GL766616    EFZ14878.1    ACPB03024744    GL435531    EFN73240.1    GGFJ01010691    MBW59832.1    KK107183    QOIP01000011    EZA55880.1    RLU16789.1    ATLV01023198    KE525341    KFB48545.1    GANO01003825    JAB56046.1    GECU01007151    JAT00556.1    KQ978881    KYN27707.1    CVRI01000075    CRL08471.1    KQ977294    KYN03957.1    GEBQ01031768    JAT08209.1    KQ981693    KYN37760.1    GL445250    EFN89980.1    NNAY01002357    OXU21477.1    GL888406    EGI61438.1    GECZ01011741    JAS58028.1    KQ982762    KYQ51078.1    KQ976692    KYM77847.1    GDIP01021580    JAM82135.1    GDIP01131160    JAL72554.1    GDIP01068761    LRGB01000763    JAM34954.1    KZS16112.1    ABLF02036611    GDIQ01223914    JAK27811.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000037510    UP000007266    + More
UP000027135    UP000235965    UP000008744    UP000001819    UP000009192    UP000245037    UP000015102    UP000007798    UP000001070    UP000095300    UP000092462    UP000008792    UP000002282    UP000192221    UP000092460    UP000092443    UP000000803    UP000008711    UP000000304    UP000078200    UP000019118    UP000030742    UP000007801    UP000095301    UP000001292    UP000091820    UP000075885    UP000037069    UP000007062    UP000076407    UP000075903    UP000092444    UP000075882    UP000075840    UP000075902    UP000076408    UP000075901    UP000092445    UP000075881    UP000036403    UP000075920    UP000075883    UP000069272    UP000000673    UP000015103    UP000000311    UP000075884    UP000053097    UP000279307    UP000030765    UP000075900    UP000078492    UP000183832    UP000078542    UP000075880    UP000078541    UP000008237    UP000215335    UP000007755    UP000002358    UP000075809    UP000078540    UP000076858    UP000007819   

PRIDE

H9IZC5   

Pfam

PF10210   MRP-S32        + More
PF00335   Tetraspanin

Interpro

IPR019346   MRPL42        + More
IPR008952   Tetraspanin_EC2_sf       
IPR000301   Tetraspanin       
IPR018499   Tetraspanin/Peripherin       

SUPFAM

SSF48652   SSF48652       

Gene 3D

1.10.1450.10    

ProteinModelPortal

H9IZC5   A0A194PXU5   A0A194R3C2   A0A2H1X136   A0A2A4JSY9   A0A0L7LUD3   + More
D6WEX1   A0A067QZS5   A0A1Y1NDI8   V5GFY3   A0A2J7R128   B4GBA3   Q290T1   B4KWL5   A0A2P8Y3T0   T1GGI7   B4MQX6   B4IYJ3   A0A0K8VZV8   A0A034V3Z7   A0A0C9RY45   A0A1I8Q6N7   A0A1B0D1D3   B4LEB4   W8C4Y8   A0A224Y0F3   B4NX43   A0A1W4VD93   A0A0A1XFB0   A0A1B0BI75   A0A1A9YPI2   Q7K0A0   B3N6J3   B4QI84   A0A1A9UJ00   A0A1L8E074   A0A1L8DSA0   A0A1L8EA96   N6TXQ5   A0A023F1T9   B3MD19   A0A1I8MIK6   B4HMC2   A0A1A9WP45   A0A182PTN7   A0A0L0CQM6   A7UTX0   A0A182XMD0   A0A182URA3   A0A1B0G5C8   A0A182KPZ0   A0A182I264   A0A182TDK5   A0A182YEE0   A0A182SL54   A0A1B0A9C4   A0A2M3ZCZ5   A0A182KE98   A0A0T6AY84   A0A0J7K694   A0A2M3ZBH5   A0A182WLB3   A0A182M1Y1   A0A182FHL3   A0A2M4C481   A0A2M4ATL6   A0A2M4ATN8   W5J496   A0A1B6FA13   A0A0N7Z8D7   A0A0V0GB57   E9IWZ8   T1H9Z6   E2A000   A0A2M4C3F3   A0A182NJE4   A0A026WIN3   A0A084WEA1   U5EP49   A0A182R4H8   A0A1B6JN01   A0A195EII3   A0A1J1J7V2   A0A151IJY2   A0A182IWY9   A0A1B6K9T3   A0A195FAW2   E2B311   A0A232ET28   F4WWI5   A0A1B6G6G3   K7IPI5   A0A151WTC1   A0A195B0M5   A0A0P6B1Z2   A0A0P5T4H5   A0A0P5XTS2   J9K879   A0A0P5I7A3  

PDB

6NU3     E-value=4.36031e-07,     Score=122

KEGG

101738632    K17423 large subunit ribosomal protein L42 | (RefSeq) 39S ribosomal protein L42, mitochondrial

GO

GO:0005840   GO:0005762   GO:0005763   GO:0006412   GO:0003735   GO:0032543   GO:0016021  

PANTHER

PTHR13450  

Subcellular location

Membrane  

Length:

114

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00145

Exp number, first 60 AAs:

0.00145

Total prob of N-in:

0.31796

outside

1  -  114

 

 

Pi

19.571966

Theta

29.316824

Tajima's D

-0.786144

CLR

0

CSRT

0.179891005449728

Interpretation

Uncertain