SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02552  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA002684
Annotation
PREDICTED:_uncharacterized_protein_LOC101739477_isoform_X2_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.021
 

Sequence

CDS
ATGGGAGATATTGTAGAATTGAATTCCACTGAAGGCCAGGTTCTTTACAGAGCCAACTCTAGTGCCATAAGAATTAGAGTTAGCTTTCCATTATCAGCAGAACCACATATAACCTTTTATTCAAAATTTCCACCCCATCAGGAACTATATCAGCTGTATATTGGGGAGGTATTTAAACTTGTAGACATATTAGAGGGTAATGTTGTTGATTATTACAACAAAGACCCACCAACTTCTTTTATCGAGTTCAAAGATTTTTGGATATCGTGGCACAGTGGAAAATTTCAATATGGTCTGTGTCCTAACATTGAACCCATGCGATGTATAAAACTTCAAAATGCAAAAAAAATTGGTTTTGTAAGTTTTCATATCCCTACAATAATAGATGAAGCTGAGGTTAGATGGGTGATTGAAAGACCCCCAATATTCCTAAATAGCTTACATTGCAAAAGTGATAAGGAAATTGAGGGTGGTGAACTACGTTGGGTAAAAATGACAAATAACAGCTCATTACCTATGGATGCAATAGTTGGTGGATATGAAAATGAACCTTTATATATTGCTAGAGCAATACATTTTAATTCTCTGACACCGGGAAAATACCTTAGAACAACAAACAAAATGTTTGTGCCTTGGGGACATACTGCATATAGAAAATATGATTTTGAGATATTATGTGGGTTTAATTATGAGTGGGTTAAAACGAGTGATAATTACATACCAGAAAATGCAGTCGTCGGTGGTTACTCAGAAGTCCGTTACGAACCACTTTACATAGGTAGAGCTATGGTTAAGAATTTTTTACTTATTGGAAAAGTTCATGTACTTTACAATACATGCTATGTACCATTTGATAATATGGAAATCGAAGTCGGTTCATATGAGATATTAGTTGAGAAAAATGTAAGGCGTGGTCTCTTCCATGACGAAAACAACATTGTAATAAGTAAAGAGCAATAA
Protein
MGDIVELNSTEGQVLYRANSSAIRIRVSFPLSAEPHITFYSKFPPHQELYQLYIGEVFKLVDILEGNVVDYYNKDPPTSFIEFKDFWISWHSGKFQYGLCPNIEPMRCIKLQNAKKIGFVSFHIPTIIDEAEVRWVIERPPIFLNSLHCKSDKEIEGGELRWVKMTNNSSLPMDAIVGGYENEPLYIARAIHFNSLTPGKYLRTTNKMFVPWGHTAYRKYDFEILCGFNYEWVKTSDNYIPENAVVGGYSEVRYEPLYIGRAMVKNFLLIGKVHVLYNTCYVPFDNMEIEVGSYEILVEKNVRRGLFHDENNIVISKEQ

Summary

EMBL
BABH01014329    BABH01014330    BABH01014331    GDQN01007277    JAT83777.1    ODYU01007801    + More
SOQ50873.1    GAIX01011993    JAA80567.1    KQ459589    KPI97582.1    SOQ50874.1    HQ634704    HQ851391    ADV17352.1    AEV89769.1    KQ414667    KOC64700.1    GBYB01009669    JAG79436.1    KJ716969    AIE12450.1    ADTU01011226    ADTU01011227    KZ288194    PBC33903.1    JR037234    AEY57651.1    ACPB03011735    LT716991    SIW59360.1    GFTR01004818    JAW11608.1    AM493719    CAM35482.1    LJIG01009418    KRT83120.1    GECL01002758    JAP03366.1    NEVH01007828    PNF35082.1    GBBI01000375    JAC18337.1    GBHO01020081    GBHO01016524    JAG23523.1    JAG27080.1    KQ971321    EFA00610.1    GEBQ01032160    JAT07817.1    GBRD01013830    GDHC01005568    JAG51996.1    JAQ13061.1    GGFK01001813    MBW35134.1    AM493718    CAM35481.1    GBHO01020086    GBHO01020084    JAG23518.1    JAG23520.1    GBHO01020085    GBHO01020082    JAG23519.1    JAG23522.1    GDHC01009161    JAQ09468.1    GGFK01002399    MBW35720.1    ADMH02000447    ETN66445.1    DQ440333    CH477429    ABF18366.1    EAT41104.1    GGFM01000464    MBW21215.1    GGFL01000562    MBW64740.1    GDHC01009013    JAQ09616.1    KK852448    KDR23720.1    NNAY01001291    OXU24466.1    GGFJ01007979    MBW57120.1    GAPW01002934    JAC10664.1    GGFJ01007980    MBW57121.1    KQ434905    KZC11215.1    GGFJ01007935    MBW57076.1    GAMD01003340    JAA98250.1    JXUM01010369    JXUM01010370    JXUM01010371    JXUM01010372    KQ560305    KXJ83142.1    GGFL01000620    MBW64798.1    GFDF01002562    JAV11522.1    AXCN02000749    GFDL01007364    JAV27681.1    DS231880    EDS42553.1    PNF35080.1    JQ653038    AFR54361.1    GANO01004970    JAB54901.1   
Pfam
PF11901   DUF3421        + More
PF12248   Methyltransf_FA
PF05253   zf-U11-48K
Interpro
IPR006616   DM9_repeat        + More
IPR024518   DUF3421       
IPR022041   Methyltransf_FA       
IPR022776   TRM13/UPF0224_CHHC_Znf_dom       
PDB
5MH1     E-value=1.02215e-07,     Score=133

Ontologies

Topology

Length:
319
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02849
Exp number, first 60 AAs:
0.00101
Total prob of N-in:
0.01324
outside
1  -  319
 
 

Population Genetic Test Statistics

Pi
19.366109
Theta
13.281987
Tajima's D
0.022587
CLR
1.673366
CSRT
0.380430978451077
Interpretation
Uncertain
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