SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02549  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA002685
Annotation
RNA_binding_region_containing_protein_1_[Bombyx_mori]
Location
Bomo_Chr5(-):5407718-5445342      View in EpiBrowser
Location in the cell
PlasmaMembrane   Reliability : 1.139
 

Sequence

CDS
ATGTTGATGGCGGGCGCTCTGCCGGCCGAGTCCGATGGACTTCTGGCTTTGGGCGCATTGCCGGGCCAGAAAGATACCACCTGGACCAAACTTTTCGTCGGTGGACTGCCGTACCACACAACCGACAAAAGCCTTCGGGAACATTTTGCGGTTTACGGCGACATCGAAGAAGCCGTCGTCATTACAGACAGACAAACCAACAAGAGCAGAGGATATGGCTTTGTGATAATGGGTGATAGGACTGCAGCGGAGAGAGCGTGTAAAGATCCGAATCCCATCATAGATGGTAGGAAGGCCAACGTTAACCTCGCTATTCTTGGAGCTAAACCTAGAGGGAATCTCGCACCAGGGTTTGGCTTGGCCGCTGCCGCGGCTGCAGGAGTGAGGGCAGGCTATCCGACAGTGCTACCGGCGCACTATGGGTTGTCTCCTGGATATGTGTACGGAACTCCGAGTTACATGGGCGCAATGAGTGGCGTCGGTGGTGGTGTTGGTGCCGGCGCCGGGGGGCTGGTACAATTGCCTCAGCTCCAACACGCTGCGGCAGTCGCGGCTGCCAACCACCTATACGAATACCAAGCTGCCGCAGCCCAGGGCGCAGCTGCGTACCAACAGCAATACGCTGCAGCAGGATTTGATCCTTACGCCACTGCTGCAGCGGCCGCTGCAGCCACAGGCGCTGGTTACGTCTCGCCATACTATGCGCTGCCCGGGGGAGGAGTCCAGGGACCGCTACTTCCACCATTGCCGTATCCTCCTCAACTGCAGGAGGCGAGGATGCAGTAG
Protein
MLMAGALPAESDGLLALGALPGQKDTTWTKLFVGGLPYHTTDKSLREHFAVYGDIEEAVVITDRQTNKSRGYGFVIMGDRTAAERACKDPNPIIDGRKANVNLAILGAKPRGNLAPGFGLAAAAAAGVRAGYPTVLPAHYGLSPGYVYGTPSYMGAMSGVGGGVGAGAGGLVQLPQLQHAAAVAAANHLYEYQAAAAQGAAAYQQQYAAAGFDPYATAAAAAAATGAGYVSPYYALPGGGVQGPLLPPLPYPPQLQEARMQ

Summary

Uniprot
Q1HPU8   A0A2A4JQC9   K7IWN0   A0A154P1M5   A0A0L7R446   A0A2A3E6V9   + More
A0A088AHB8   A0A158NTC3   A0A151K0T0   A0A151X5D0   A0A0C9R5F4   A0A195CAZ3   A0A232FIF0   A0A0M8ZZ22   A0A195BU07   A0A3L8D403   A0A0T6AXP3   A0A195E361  
Pubmed
20075255    21347285    28648823    30249741   
EMBL
DQ443304    ABF51393.1    NWSH01000901    PCG73622.1    KQ434786    KZC05244.1    + More
KQ414659    KOC65599.1    KZ288347    PBC27503.1    ADTU01025780    ADTU01025781    KQ981248    KYN44254.1    KQ982515    KYQ55606.1    GBYB01002061    JAG71828.1    KQ978072    KYM97278.1    NNAY01000156    OXU30465.1    KQ435819    KOX72489.1    KQ976409    KYM90955.1    QOIP01000014    RLU14733.1    LJIG01022578    KRT79826.1    KQ979701    KYN19605.1   
Proteomes
UP000218220    UP000002358    UP000076502    UP000053825    UP000242457    UP000005203    + More
UP000005205    UP000078541    UP000075809    UP000078542    UP000215335    UP000053105    UP000078540    UP000279307    UP000078492   
PRIDE
Q1HPU8   
Pfam
PF00076   RRM_1
Interpro
IPR035979   RBD_domain_sf        + More
IPR037366   BOULE/DAZ       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
SUPFAM
SSF54928   SSF54928       
Gene 3D
3.30.70.330    
ProteinModelPortal
Q1HPU8   A0A2A4JQC9   K7IWN0   A0A154P1M5   A0A0L7R446   A0A2A3E6V9   + More
A0A088AHB8   A0A158NTC3   A0A151K0T0   A0A151X5D0   A0A0C9R5F4   A0A195CAZ3   A0A232FIF0   A0A0M8ZZ22   A0A195BU07   A0A3L8D403   A0A0T6AXP3   A0A195E361  
PDB
2CQD     E-value=8.76816e-39,     Score=400

Ontologies

KEGG
733119    no KO assigned | (RefSeq) RNA binding region containing protein 1
GO
GO:0003723   GO:0003676   GO:0000166   GO:0005524   GO:0005085   GO:0016776   GO:0006172   GO:0006631   GO:0006635   GO:0006281   GO:0048384  
PANTHER
PTHR11176  

Topology

Length:
261
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.737
Exp number, first 60 AAs:
0.00355
Total prob of N-in:
0.06106
outside
1  -  261
 
 

Population Genetic Test Statistics

Pi
227.750663
Theta
181.007781
Tajima's D
0.763565
CLR
0.723715
CSRT
0.592070396480176
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
27102218 GYGFVIMGDR 100.00 0.003
28467696 ACIQYEPDEPIFQK 100.00 0.003
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