SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02548
Pre Gene Modal
BGIBMGA002687
Annotation
PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_30_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.251
 

Sequence

CDS
ATGGCCGGCCAAGGGCACCAGTTCCCCAGCAATTTCCAAGCGAATGCTGCCGGTATGCGTTCAGGTTTCGGTGGAGGGCCTATGGGGGCACAAATGCAAACTATGCCCAATCAGTTAGCAGGTGTTATGGGAGGCCCAATGGGAAATACTGGTGGTATGGTGGGCATGGGAAATCAAATGGTGCCACCCTATGGGGCAATACAAAATCAAATGGGAAATATGGGGATAGGACCTCAGGGTATGGGTGTTGGTGTTGGTGGTAATCCTGCAGCAAGCATGGGACCTCAAGGCGTTCAGCAACCAGGCACAATGCAAGCCAGTGCAGTGTCAGCACAGCCAACAGCTCCTCCCGCACAACCCTCAGTGAACCAACCGCCACAGAACAAAGAGTTCAACACAGCATCGTTGTGCAAATTTGGACAAGAGACCGTGCAAGACATAGTAAGTCGAACGCAAGATGTATTTCAAACTTTAAAAGCTATACAGCCACCGAATGGAACACAGCACGGCGAGAACGCCAGCAACGATAAGAAAGCGAAAATGCAAGAACAACTCCGCACTATTAGACTATTGTTCAAGAGACTTCGATTGATCTATGAAAAATGCAATGAAACTTGTCAGGGCATGGAATACACGCACATGGAAAGTCTAATACCGTTAAAGGATGAAGCCGAAAATAAAACATTGGACGAGCGTCGCAACACAGAGTCCTATCGACTCGCCCTAGAAGAAAACACGGAATTGACTGAACAAGTGGTGTTAAAAAACAAGCAACTAAAAGAAGTTATAACGAATTTAAGAACCATTATATGGGAGATAAACGTGATGTTGACAATGCGCCGGTCGTGA
Protein
MAGQGHQFPSNFQANAAGMRSGFGGGPMGAQMQTMPNQLAGVMGGPMGNTGGMVGMGNQMVPPYGAIQNQMGNMGIGPQGMGVGVGGNPAASMGPQGVQQPGTMQASAVSAQPTAPPAQPSVNQPPQNKEFNTASLCKFGQETVQDIVSRTQDVFQTLKAIQPPNGTQHGENASNDKKAKMQEQLRTIRLLFKRLRLIYEKCNETCQGMEYTHMESLIPLKDEAENKTLDERRNTESYRLALEENTELTEQVVLKNKQLKEVITNLRTIIWEINVMLTMRRS

Summary

Pfam
PF11315   Med30
Interpro
IPR021019   Mediator_Med30_met       

Ontologies

GO

Topology

Length:
282
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.17616
Exp number, first 60 AAs:
0.16132
Total prob of N-in:
0.02849
outside
1  -  282
 
 

Population Genetic Test Statistics

Pi
300.150645
Theta
168.300165
Tajima's D
2.603588
CLR
0.380812
CSRT
0.951752412379381
Interpretation
Uncertain
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