Gene

KWMTBOMO02533

Pre Gene Modal

BGIBMGA002692

Annotation

PREDICTED:_guanine_nucleotide_exchange_factor_DBS_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr5(-):4964566-4977501      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.495 Nuclear   Reliability : 1.487

CDS

ATGAACTCCCCTCCACGGTGCGCTTCGGAGCGCTATGCATGTCCTTCTTCAAACGAAGCTTGCGGAGAGTACTTAATGGTAGGCCGCGGCTTGGCTCTGCTCCTGGCATTGCTGACGTCCATGAGCGACGGTGACCACTTACCATCAGAAGCGGAGTGTGATGGGTGCGGCAGCGAAGGTGACGAAGCTCGCAATGTGGGAGAGCTTTTACTGCCACAATACGCGCTGGCCACCGGAGGACTGGCCAAAGACCACCGTCCCCTCATCACCTTCCCGGACAACAATAACTTTCATCTCATCACTGCCTCCGAGTACCGAAGACTGTTGCTCTACCTCACCTCTGTGCCTTCGATACTAGAAGCAGATATGGGCTTCCACATTATAGTGGACAGAAGAAAGGACAGATGGAATTCTGTAAAAACAGTATTACTTAGGATCTCAGAATTCTTCCCTGGTATAATCCACGCGGTTTACGTTCTTCGCCCGTCAAGTTTCCTGCAGAAAGCGCTGTCCGAGGTCAGCAGCAAACTGTTTAAGGAGGAATTCAGGTTCAAAGTGCTAGTGTGCTCCACGGTCGATGAACTCTACGAGCACTTCGAAAGGTCTCAGCTGACTCCTGACCTTGGCGGGGAGTTACAATATTCACATTCTGAATGGATACAGCAGCGAATAGCTTTAGAGAAATTTTCAACGCTTATGAAAGAGACATCGACGAAGCTGGACGATTTCATGCACGAGATAGTCGACTGCGATATGGGAAACGATCCCACACAAACCAAAGAATTATTAGACTGTCAGGGAACTAGGTATAAAGCTTTAAAATCTGAATTATCAATAGCAACAACACAAGGAGAAGATTTATTAACACAAGTGCGGAAGCCGAATCTTACGTACAACATTATAAGTCATGTAGCTGCCGTCGAAAGGTTACTAGTACAACTGGAAGAGACAGAGAAGCAGTTTGATAATTTCTGGCAGAAGCATTCCACAAAACTCAATCACTGGTTGAAGTTTAGAACGTTTTTATTGAATTTCAAACAGATGCAGGCAACTTTAGATCATCATCTAAAAGCAGCGTGTGACATGACCGAAGTGGGAGAAACAGCCAGTAGAGTGGAAAGTCTCATTCAGGAAGCGCACAACTTTGAGAAATTATGCAACTGTGATCTTGATACTGCATCTTCAGTGATCGATGATGGTGATAAACTAATGCAAGATCCGCTAAGTTCCGTCGATCATATAGAATCAAAATGCGAAGAACTAAGACGTACAAGCGCCCTGCTTATCGACAAGATACAAAAACGAAATTTACTACTCACGAAAGCTAGAGAACTAATGGATAGGATAGATAAGGCGAACGAATGGTGTGCAACTGGAGTAGAGCTGTTAGCCGGAGAAGGAGGTCTGCTGGCTGTAGACAAGCTGCTGGAAGACGCTCAGTCCTTTGGGCTGACAGCACCTGAACAGTTCCGAGACATGCTTATGCAGTCCGCCACCCAAGAAACAAGAGCTTTGGTCACTCAAGTAGCACAAAGAGTTGAGGACGTATGGTTGATGGTGTCAGTGAAACGAGCTTCACTGCAACGCGCGGCCGCCAGACCGGCTCGCCCCGTACAGTCCGTGCCCCCGCAGAGCGCTGCCCTACCAACTCCGGCTAATCAACAGATGCAAATCCGTTAA

Protein

MNSPPRCASERYACPSSNEACGEYLMVGRGLALLLALLTSMSDGDHLPSEAECDGCGSEGDEARNVGELLLPQYALATGGLAKDHRPLITFPDNNNFHLITASEYRRLLLYLTSVPSILEADMGFHIIVDRRKDRWNSVKTVLLRISEFFPGIIHAVYVLRPSSFLQKALSEVSSKLFKEEFRFKVLVCSTVDELYEHFERSQLTPDLGGELQYSHSEWIQQRIALEKFSTLMKETSTKLDDFMHEIVDCDMGNDPTQTKELLDCQGTRYKALKSELSIATTQGEDLLTQVRKPNLTYNIISHVAAVERLLVQLEETEKQFDNFWQKHSTKLNHWLKFRTFLLNFKQMQATLDHHLKAACDMTEVGETASRVESLIQEAHNFEKLCNCDLDTASSVIDDGDKLMQDPLSSVDHIESKCEELRRTSALLIDKIQKRNLLLTKARELMDRIDKANEWCATGVELLAGEGGLLAVDKLLEDAQSFGLTAPEQFRDMLMQSATQETRALVTQVAQRVEDVWLMVSVKRASLQRAAARPARPVQSVPPQSAALPTPANQQMQIR

Uniprot

H9IZK7   A0A194PGI0   A0A2H1V143   A0A194QVP0   A0A212EGQ0   A0A1E1WBN5   + More
A0A1B0GIY9   A0A2J7Q864   A0A1L8DLV9   A0A182MUA3   A0A182PZX4   A0A151IBC3   A0A195BTJ2   F4WV77   A0A151IRI5   A0A195EW97   A0A182IYA6   A0A182X4T8   A0A158NNX2   A0A026WQL9   A0A182I3X8   A0A151WK14   A0A182RB05   U5ESZ7   A0A232FA84   A0A3L8DL03   K7IR14   A0A1A9ZAT3   A0A0C9QUX2   E2C515   A0A2M4CK05   A0A0C9Q0X1   D6W697   A0A2M4BB97   A0A1I8PJL3   A0A182NHA5   A0A182WJ05   T1P8I7   A0A2M4AGM3   A0A182JT36   A0A084VF41   A0A154PP09   W8B2W2   A0A1I8N0J8   A0A0L0C320   A0A2A3E7G9   U4TZ26   A0A1Q3FU42   A0A1Q3FTS9   A0A1Q3FTZ1   A0A310SAF2   A0A087ZVG3   A0A0A1XDK1   A0A0K8W6U2   A0A0K8V9W9   A0A0K8WAG7   A0A1Q3FTS0   A0A0K8VBS4   A0A0Q9XHX7   A0A0K8UGA7   A0A1Y1MLM0   A0A0Q9XM44   A0A0Q9XII7   B4KLR3   A0A0Q9XKF3   A0A1Y1MNF9   A0A1B6JSL1   A0A0R3NKM6   A0A1Y1MPV4   A0A1Y1MJQ8   A0A3B0J773   A0A0Q9WFQ6   A0A2M4BB98   A0A1B0GLU4   A0A182XZA3   A0A0Q9WNQ5   E9J059   A0A182FIB3   A0A0N0BE81   A0A1B6D890   A0A0L7QS96   A0A1J1IKC3   A0A182KS30   A0A067QH20   N6T989   Q5TX53   T1JN60   A0A0N7ZC64   A0A0P5T5Q5   A0A0P5AKL4   A0A0P5DP42   A0A0P6E2T6   A0A0P5SKL0   A0A0P5SV02   A0A0N8CXE0   A0A0P4ZQX2   A0A0P5DTF0  

Pubmed

19121390    26354079    22118469    21719571    21347285    24508170    + More
28648823    30249741    20075255    20798317    18362917    19820115    24438588    24495485    25315136    26108605    23537049    25830018    17994087    28004739    15632085    25244985    21282665    20966253    24845553    12364791   

EMBL

BABH01014374    KQ459606    KPI91814.1    ODYU01000181    SOQ34539.1    KQ461103    + More
KPJ09389.1    AGBW02015043    OWR40667.1    GDQN01006652    JAT84402.1    AJWK01017910    AJWK01017911    AJWK01017912    NEVH01016978    PNF24765.1    GFDF01006754    JAV07330.1    AXCM01002277    AXCN02000894    KQ978111    KYM96952.1    KQ976417    KYM89751.1    GL888384    EGI61843.1    KQ981129    KYN09271.1    KQ981953    KYN32421.1    ADTU01021865    ADTU01021866    KK107128    EZA58342.1    APCN01000228    KQ983031    KYQ48147.1    GANO01002163    JAB57708.1    NNAY01000622    OXU27343.1    QOIP01000006    RLU21097.1    GBYB01007559    JAG77326.1    GL452714    EFN76969.1    GGFL01001479    MBW65657.1    GBYB01007558    JAG77325.1    KQ971306    EFA11099.2    GGFJ01001183    MBW50324.1    KA644964    AFP59593.1    GGFK01006605    MBW39926.1    ATLV01012360    KE524785    KFB36585.1    KQ435007    KZC13626.1    GAMC01018969    JAB87586.1    JRES01000960    KNC26720.1    KZ288345    PBC27655.1    KB631673    ERL85283.1    GFDL01004049    JAV30996.1    GFDL01004036    JAV31009.1    GFDL01004037    JAV31008.1    KQ762207    OAD56051.1    GBXI01005276    JAD09016.1    GDHF01011579    GDHF01005704    GDHF01001175    JAI40735.1    JAI46610.1    JAI51139.1    GDHF01016979    GDHF01012901    JAI35335.1    JAI39413.1    GDHF01031247    GDHF01018466    GDHF01004494    JAI21067.1    JAI33848.1    JAI47820.1    GFDL01004034    JAV31011.1    GDHF01016324    JAI35990.1    CH933808    KRG04868.1    GDHF01026678    JAI25636.1    GEZM01029713    GEZM01029712    JAV85978.1    KRG04867.1    KRG04866.1    EDW09723.2    KRG04865.1    GEZM01029715    JAV85975.1    GECU01005496    JAT02211.1    CM000071    KRT01435.1    GEZM01029716    GEZM01029714    JAV85976.1    GEZM01029711    JAV85979.1    OUUW01000001    SPP75963.1    CH940648    KRF79867.1    GGFJ01001184    MBW50325.1    AJVK01002046    CH963719    KRF97494.1    GL767291    EFZ13845.1    KQ435845    KOX71191.1    GEDC01015385    JAS21913.1    KQ414766    KOC61409.1    CVRI01000054    CRL00210.1    KK853797    KDQ71697.1    APGK01047262    KB741077    ENN74293.1    AAAB01008807    EAL41713.3    JH431723    GDRN01072309    JAI63576.1    GDIP01132923    JAL70791.1    GDIP01198013    JAJ25389.1    GDIP01159424    JAJ63978.1    GDIQ01068632    JAN26105.1    GDIP01138618    JAL65096.1    GDIQ01099682    JAL52044.1    GDIP01089527    JAM14188.1    GDIP01210060    JAJ13342.1    GDIP01155478    JAJ67924.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000007151    UP000092461    UP000235965    + More
UP000075883    UP000075886    UP000078542    UP000078540    UP000007755    UP000078492    UP000078541    UP000075880    UP000076407    UP000005205    UP000053097    UP000075840    UP000075809    UP000075900    UP000215335    UP000279307    UP000002358    UP000092445    UP000008237    UP000007266    UP000095300    UP000075884    UP000075920    UP000075881    UP000030765    UP000076502    UP000095301    UP000037069    UP000242457    UP000030742    UP000005203    UP000009192    UP000001819    UP000268350    UP000008792    UP000092462    UP000076408    UP000007798    UP000069272    UP000053105    UP000053825    UP000183832    UP000075882    UP000027135    UP000019118    UP000007062   

PRIDE

H9IZK7   

Pfam

PF13716   CRAL_TRIO_2        + More
PF00621   RhoGEF
PF00018   SH3_1
PF00169   PH
PF00435   Spectrin

Interpro

IPR001251   CRAL-TRIO_dom        + More
IPR036865   CRAL-TRIO_dom_sf       
IPR035899   DBL_dom_sf       
IPR018159   Spectrin/alpha-actinin       
IPR001452   SH3_domain       
IPR000219   DH-domain       
IPR001849   PH_domain       
IPR036028   SH3-like_dom_sf       
IPR001331   GDS_CDC24_CS       
IPR011993   PH-like_dom_sf       
IPR002017   Spectrin_repeat       

SUPFAM

SSF52087   SSF52087        + More
SSF48065   SSF48065       
SSF50044   SSF50044       

Gene 3D

3.40.525.10     1.20.900.10     2.30.29.30    

CDD

cd00170  SEC14
cd00160  RhoGEF

ProteinModelPortal

H9IZK7   A0A194PGI0   A0A2H1V143   A0A194QVP0   A0A212EGQ0   A0A1E1WBN5   + More
A0A1B0GIY9   A0A2J7Q864   A0A1L8DLV9   A0A182MUA3   A0A182PZX4   A0A151IBC3   A0A195BTJ2   F4WV77   A0A151IRI5   A0A195EW97   A0A182IYA6   A0A182X4T8   A0A158NNX2   A0A026WQL9   A0A182I3X8   A0A151WK14   A0A182RB05   U5ESZ7   A0A232FA84   A0A3L8DL03   K7IR14   A0A1A9ZAT3   A0A0C9QUX2   E2C515   A0A2M4CK05   A0A0C9Q0X1   D6W697   A0A2M4BB97   A0A1I8PJL3   A0A182NHA5   A0A182WJ05   T1P8I7   A0A2M4AGM3   A0A182JT36   A0A084VF41   A0A154PP09   W8B2W2   A0A1I8N0J8   A0A0L0C320   A0A2A3E7G9   U4TZ26   A0A1Q3FU42   A0A1Q3FTS9   A0A1Q3FTZ1   A0A310SAF2   A0A087ZVG3   A0A0A1XDK1   A0A0K8W6U2   A0A0K8V9W9   A0A0K8WAG7   A0A1Q3FTS0   A0A0K8VBS4   A0A0Q9XHX7   A0A0K8UGA7   A0A1Y1MLM0   A0A0Q9XM44   A0A0Q9XII7   B4KLR3   A0A0Q9XKF3   A0A1Y1MNF9   A0A1B6JSL1   A0A0R3NKM6   A0A1Y1MPV4   A0A1Y1MJQ8   A0A3B0J773   A0A0Q9WFQ6   A0A2M4BB98   A0A1B0GLU4   A0A182XZA3   A0A0Q9WNQ5   E9J059   A0A182FIB3   A0A0N0BE81   A0A1B6D890   A0A0L7QS96   A0A1J1IKC3   A0A182KS30   A0A067QH20   N6T989   Q5TX53   T1JN60   A0A0N7ZC64   A0A0P5T5Q5   A0A0P5AKL4   A0A0P5DP42   A0A0P6E2T6   A0A0P5SKL0   A0A0P5SV02   A0A0N8CXE0   A0A0P4ZQX2   A0A0P5DTF0  

KEGG

101739892    K20685 guanine nucleotide exchange factor MCF2 | (RefSeq) guanine nucleotide exchange factor DBS

GO

GO:0035556   GO:0035023   GO:0005089   GO:0016021   GO:0005085  

Length:

559

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

6.62720999999999

Exp number, first 60 AAs:

1.24314

Total prob of N-in:

0.18447

outside

1  -  559

 

 

Pi

198.72626

Theta

164.379001

Tajima's D

0.483893

CLR

0.550231

CSRT

0.508924553772311

Interpretation

Uncertain