Gene

KWMTBOMO02528  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002694

Annotation

PREDICTED:_nucleoporin_NUP188_homolog_[Amyelois_transitella]

Location

Bomo_Chr5(-):4888065-4898761      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.232

CDS

ATGACAACGAGTAGTGTAAATTATTGGAAGAGGCTATGGCGCTGGACAACTTCGGAGAGTCTGACTACAGAAGAATTGACCAAAATTTTTGATACAAAAGAAGTAAGAGATGGACTTAAAATTGGATTGGCTAGTTACAAACAAAACAAGCCTGAGGACTTTACCAAACTTCAGTCACAGTATCCGGATCAAACAAAGCTGCTCACTATAGTGCAGACACTTCAAAATTATATTGATGTCGACTGTTTTCAATTATGGGAAATATTAAAAAACTATTTGTGTGATATATCGTATGGTACACCTGAGAGTGCATTAAAGAATGTTGCATTTGTTGACACCCGACCTACATATTTGTCTCCCAAAGTATGGAGCTTCTATTATTCTGAGCGACTCTTTCTACTCAAATTGCTTCAGTACATCATTCAGCTTAAAGATGATGCTCAATATAAATATCAAAAGGAATTCACCAAGATTATTGAAGATATTGGCATACAAAACATTAAAACCTCACTCATATCTCAATTTGAAAAGGTCTTAAGTGCTGCTCCACCATCTAGAAAAATATTGAGTGATTTTTCTAATGATTCTGTGCGACACACTTGGTTAGAGAGTAATTTGAGAGAACAATTAGCAATACTTCAAATACTCTTAATAATTGCGGAAAAGAACACATTTCAAGCTGAAGAATTCAAAAAATTGTTTAATTTGTTCATAAAACACAGTTTTGGGAAGAATTATGGGTTCAGTGAGTTCCTGGGAGAAAGACACAGAGAGCAATGCCTCTGTATTATGTACATGGAAGTTTGCCTGTTTATGATCATTATTGATCATTTGAAAATTGATAATTTATCAACATGGATAGAAAATACTAAAGAAGTTGTAGAAACTGAATTGACAAAAATTCAAATGTGTACAGAACACAGTGCCATGCTTTTGACGTGGATGCTGGTAACGTTGCAGAGTGATCAACATGTAAAATTATTTGAAAGCCAATATCAACATTTTGGCAGTACTGCAATGAAGATGAAAGTGTTTGAGTTTCTTCAACAGATGCTGAACAGTCCTGTATTCTCAGATCAATCAAAGTGCTCACAAATAGCTAAACAAAGAATGTTTAATATCCTCAACGAGCTTTGTGACAAGTTTGATGGAGACGGAAGCCTCAGCAATCAAACTGGCATTATACAGCTGTGTTCAGACCTGCTTCAGTCACCAGAAATAGCTTGTCAATTCTGGAAACTTCATCAGAGAGACAAAGACTTTGGTGTAGTGTCATTATGGAATACTGCACTAGAATATTTCCCTCATCATTTTAGTCCTCTCTCAAATTTAGCTGCTGGCTTAGTTCAAGCTGGTAAGAACAGCGTCAGAAATCTAATATCTGAATTGAAAAATTTACCTGTATACACGGAAATATACAATCCAAACGCAGTACCACTGGTATCTATACAATACGATGACGCCATAGTCGGCAGAGAGTACTACCCTCTGGGAGATCCGTCTTATCGCATTGAAACTGGCTCCAAAGCCACAATCATGGAAAGAAAGGAAGGCACCATGATCCACTTCAGAACACCTTACTCTTATTGGACGGTGTTCAACAGCGATATAGAAAAAGCTTTAGACAGAAAACATCATCAGTACAACGTCAATGCGATATTGCAGAGAGTTTTTGAAGGTGCGAGAGTATTAAAGGGTGTACTCAAGTCGCTGGTTGAGGAGAAAGAGATCCCAAAGGCGTTGGTAGAATCATGTGAAGGAGTTTTCGATATACTAGTAAGGTTTATGAGGGCTGATTCTCCGCCTCTGCTGCTTTTGGTGGAATGCCTTGAAGTATGTTCTGCGTTGGTGCCAGTTTTCCCGAAAGAAATTCATTTGAGATTGATAAACGCAGGTCTGTTACCACGCATCATGAATCAGAAATTGACGCATATAGAGTATGCCAATGGCGAATCGTTTGATTCAGCTACCGTTGGATCCTATTTAGTTGCACTAGAACAACCTACAGGAACATACAAGTTCCTATCTGCGTATATTGATATGCTTTGCACCTTTCATGAGGCATCAACCGAAGAACGTGTTACCAAAGAAATAATTCTGCCCGGATTGATCCTGCTCCTGCGCGAAGTGTTGCCGAACGCATACGGCTGGCGCTACACGAACATACAGGACCGGCGCGCCATGTTGCAGCGCTGTATGCGCTTCCTGACCTTAGTGTTGCAAGACCAGAAAACAGATGGCAGCACCGCGCTGTTGAAACGGACCTGTGTATATAGTTTACTGCACACTGAAAACGCTTTGGTGCTGCTCAAGATTATTTCACTGGGAAATGAACATTTAGAGAACATGATACAAAATGAAACGAACTGGTCATCCGGTACGGGTTCACAGTTTATATCGATAATACAGAGGTGCGTGGCGGTGCTCATGTTCGCTTTGCGTCTCAAGAGTCTCGTCACGGGATCCAACGAGATGACGCCGTTGGAACATCTCATATTCACTCAGAATAAGCAGAAGGATTCATTGAAAGTTGTACCCAAAGTGACAAGTTATATCAATCACGTGTTCAACAAAAGCTTGGCCGTGTTGTGCTGTAGGCTCTTGAAGATGTTTGCCGATAGTTTCCAGATGTCCTTGTTCGCGTCGTTGGACATGACCGCGTACCAAGTGCGGGTGTTGTTCCTCGATCGACTTCGCGACGAGTACGAAACGACAGAACTAAAAGTGGCCATACTAGAGTTCGTGGCCACGTGCGTGGGCACGCAGCCCGGCCTCACTGAAGCGTTCTTCATGATGAACTACGAAAAAACGAATGACGATAAAAAACTCAAGGAAACCGATAAAGATAAGGAGGAAAACCTGTACAACTACGAAAGCATCCTCGGTTATATGGCGGAGTACTTGGGAACTGTGAAGGCTGATGCGAAACAACTTCAAAGTCCGCTCTTAGGGTGCATAATGGGTCTGTTCCATGCTCTATGGAAGAACAATATGCAGATTCTTGTGAAAAAATTACGCGAAACCGCAACATTTTGGGATTACATGACCAGTCCACTCTTCAGTGAGATACAGCCCGGCTTGAGAACTTATTCGCAAATATTCAACGTTATCGGCATAGAACTATTCGTCTCTCGGGGGAAAATAGAAAACGCTTTGAAACTGATGCTCGAGCAATTGTTTGATACCAACAAAACCCATTTGGACAAATGGATCAACCATATATTTGCGTTTAAAGGTAGAAGCGAAAATGAGCCCGTCGATAAAGTGCCGGTCTGGCTTGGATTGTTAACCTCTTGGAAAGATTTCACCACGATCTTTTGCAAAACCTTACCGATAAGTTTGAATATAGCGCACAAAGCGAAAATGGTCACCCCCTGCATGACCGCCTTGTTGAACGAACTCGAAGATCTGAAAGACGGAAGACTGGTCGTTATGTTGGCCGAACTGTACGTCATAATGTTGGCCAATTGGAGCCACGATTGCTTTGAAAACAGAAAAGCCAGTGCCAAACAAATCGATCGTTTATTAACCAACACTGCGATTATATACGAATGCCTCCACCCGAGGGCCAAAAAAGCCATCCTCTCCATCTGCACAGTCGCGATCAGCGGTCTCGATTATGAAATAAAGGCTAACAGTGCCACCGCGCAAAGCATTATTAGATCCGTGACCAATTTAAATAGCGTTGAGTTGGAGAAATTGTTTGACGATTTCAAGGATCTTCCTAAATCGGACACGAAGACCACCGAGCCCTCGACGTACGAGGACGTATCGCCGGTCGTTCTATCATTGGCGATGTTGGAACAGTGTCTGGAGTTGTACGACGACATGTTCTCGGGACTATCGCAGTGGTTCCAGTCGAGTCGATTCATAAACAAGCTCCTGTGCTGTTTGCAGATGTGTTTACAGAGCCGTCGCCATTACCAGACGTCCCTGGCGGCGTTACGGTGCCTAACTGTGTACTCCCGGGGACCTTTCTCTAAGGAGCTCTTGCTGAGCGATATCGACCAGTTTTTATGGATGCAACTGTTGCCGCCAAAATTCGACGGCGTAACTTGGAAGCCCGAGGAGTGGTGGAAAGTGTACTCGTACAGCTTAGACTTTATATCCATGATGGTCATGAAACACGGTCAGTTCTTTGCGAGTGACGCGATCACATTTGTCGGGGTCCACTTGGAACATTTGATAGAGGCCATAAACCTGCCACGACAGGTCGTCAGCATCGATTCGTTAAATGTATGCGCGTCCGCTTTGAATCTTATAGTTCAATTAGTGAAATACGAATCTAGATGGCGCTTACAGAACATGCATTCGCTTTTTGGTATTATGAGAAGTATAAGCGCGTGCCTGTACCAATGCGTGATCTACATGATCCGATCGCGACGTACCTCCGACGCCGCGCAGCCTCCGAGCGACGACACTCCGCCGACGCCGTCCTTATTGCCAAGGACCTTAGAAGTTCTCCACATGTCTACACTGTGCTTGCTATCGTTCAGTCCCAATCTGCTGTCACTACTCGCTGACCCCGGACTAGACTTGGAGAGATGGCAGCCATTAGTCGAACTACATTTCGGAGCGCCCAAGCTGTCGTATGAACCATTCCCTCAACTAACTTTCGGTACATTAGTATCCGCCATCTGCTTGTTGACGAGATCATTGAATCATTGA

Protein

MTTSSVNYWKRLWRWTTSESLTTEELTKIFDTKEVRDGLKIGLASYKQNKPEDFTKLQSQYPDQTKLLTIVQTLQNYIDVDCFQLWEILKNYLCDISYGTPESALKNVAFVDTRPTYLSPKVWSFYYSERLFLLKLLQYIIQLKDDAQYKYQKEFTKIIEDIGIQNIKTSLISQFEKVLSAAPPSRKILSDFSNDSVRHTWLESNLREQLAILQILLIIAEKNTFQAEEFKKLFNLFIKHSFGKNYGFSEFLGERHREQCLCIMYMEVCLFMIIIDHLKIDNLSTWIENTKEVVETELTKIQMCTEHSAMLLTWMLVTLQSDQHVKLFESQYQHFGSTAMKMKVFEFLQQMLNSPVFSDQSKCSQIAKQRMFNILNELCDKFDGDGSLSNQTGIIQLCSDLLQSPEIACQFWKLHQRDKDFGVVSLWNTALEYFPHHFSPLSNLAAGLVQAGKNSVRNLISELKNLPVYTEIYNPNAVPLVSIQYDDAIVGREYYPLGDPSYRIETGSKATIMERKEGTMIHFRTPYSYWTVFNSDIEKALDRKHHQYNVNAILQRVFEGARVLKGVLKSLVEEKEIPKALVESCEGVFDILVRFMRADSPPLLLLVECLEVCSALVPVFPKEIHLRLINAGLLPRIMNQKLTHIEYANGESFDSATVGSYLVALEQPTGTYKFLSAYIDMLCTFHEASTEERVTKEIILPGLILLLREVLPNAYGWRYTNIQDRRAMLQRCMRFLTLVLQDQKTDGSTALLKRTCVYSLLHTENALVLLKIISLGNEHLENMIQNETNWSSGTGSQFISIIQRCVAVLMFALRLKSLVTGSNEMTPLEHLIFTQNKQKDSLKVVPKVTSYINHVFNKSLAVLCCRLLKMFADSFQMSLFASLDMTAYQVRVLFLDRLRDEYETTELKVAILEFVATCVGTQPGLTEAFFMMNYEKTNDDKKLKETDKDKEENLYNYESILGYMAEYLGTVKADAKQLQSPLLGCIMGLFHALWKNNMQILVKKLRETATFWDYMTSPLFSEIQPGLRTYSQIFNVIGIELFVSRGKIENALKLMLEQLFDTNKTHLDKWINHIFAFKGRSENEPVDKVPVWLGLLTSWKDFTTIFCKTLPISLNIAHKAKMVTPCMTALLNELEDLKDGRLVVMLAELYVIMLANWSHDCFENRKASAKQIDRLLTNTAIIYECLHPRAKKAILSICTVAISGLDYEIKANSATAQSIIRSVTNLNSVELEKLFDDFKDLPKSDTKTTEPSTYEDVSPVVLSLAMLEQCLELYDDMFSGLSQWFQSSRFINKLLCCLQMCLQSRRHYQTSLAALRCLTVYSRGPFSKELLLSDIDQFLWMQLLPPKFDGVTWKPEEWWKVYSYSLDFISMMVMKHGQFFASDAITFVGVHLEHLIEAINLPRQVVSIDSLNVCASALNLIVQLVKYESRWRLQNMHSLFGIMRSISACLYQCVIYMIRSRRTSDAAQPPSDDTPPTPSLLPRTLEVLHMSTLCLLSFSPNLLSLLADPGLDLERWQPLVELHFGAPKLSYEPFPQLTFGTLVSAICLLTRSLNH

Uniprot

H9IZK9   A0A2A4JIZ9   A0A194QV96   A0A212EGR6   A0A1Q3F052   A0A182H3N8   + More
B0WH56   A0A1S4FK36   A0A182RX09   Q16YE6   A0A182PSF0   A0A1I8N9V1   A0A182KBZ0   A0A182WAH5   A0A0L0BP56   A0A182J1L8   A0A1I8PXZ0   A0A182YLB8   A0A1A9UP02   A0A182LWA5   W5JQH8   A0A182HP00   A0A182XEX4   Q7Q9K3   A0A182F9N5   A0A084WKU1   A0A1A9YR46   A0A182Q2U3   A0A1B0ALK0   A0A336LW21   A0A1B0GBY2   W8B1M3   A0A182N1Q7   A0A0K8U8T0   A0A1A9ZYS2   A0A182LBK9   A0A1A9X3K7   A0A1B0DHP3   A0A0A1XKU8   A0A034V1W5   A0A182UCX1   A0A1J1IVD6   Q28YW3   N6V887   A0A3B0JPP1   A0A3B0J4Y3   B4GIL0   B3MCV0   A0A1B0CU00   A0A0M5IZG4   B4MPF8   B4P501   A0A034V546   B4J8F7   A0A0J9RBB1   B3NRW7   A0A0B4K859   A0A1W4VQ79   B4MFP1   A0A0Q9XGY3   B4KRS4   A0A1B0CDP6   A1Z945   B4HPN0   B4QDF4   A0A2J7QJ95   A0A3L8DHJ2   E9IY41   A0A0J7KQP7   A0A026WQY4   A0A0C9RG62   A0A158NDU3   A0A088A7W9   A0A2A3EQ96   K7ITB5   A0A232F8X3   A0A195C521   E2BXF3   A0A151X491   A0A195D7T5   E2AXL8   A0A195ERA6   A0A195BPK2   F4W7X9   A0A0L7RAX5   A0A0T6AXZ7   A0A1L8F1N1   A0A0P7UWI8  

Pubmed

19121390    26354079    22118469    26483478    17510324    25315136    + More
26108605    25244985    20920257    23761445    12364791    14747013    17210077    24438588    24495485    20966253    25830018    25348373    15632085    17994087    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    30249741    21282665    24508170    21347285    20075255    28648823    20798317    21719571    27762356   

EMBL

BABH01014383    NWSH01001356    PCG71554.1    KQ461103    KPJ09392.1    AGBW02015043    + More
OWR40671.1    GFDL01014112    JAV20933.1    JXUM01107731    KQ565169    KXJ71256.1    DS231933    EDS27563.1    CH477517    EAT39658.1    JRES01001578    KNC21791.1    AXCM01001477    ADMH02000800    ETN64999.1    APCN01002823    AAAB01008900    EAA09356.4    ATLV01024147    KE525350    KFB50835.1    AXCN02000987    JXJN01031215    UFQT01000126    SSX20517.1    CCAG010005902    GAMC01011580    JAB94975.1    GDHF01029316    JAI22998.1    AJVK01061378    GBXI01002328    JAD11964.1    GAKP01021721    JAC37231.1    CVRI01000059    CRL03548.1    CM000071    EAL25852.1    ENO01701.2    OUUW01000001    SPP74611.1    SPP74612.1    CH479183    EDW36330.1    CH902619    EDV37352.1    AJWK01028223    CP012524    ALC41498.1    CH963849    EDW73997.1    CM000158    EDW90722.2    GAKP01021720    JAC37232.1    CH916367    EDW02316.1    CM002911    KMY93316.1    CH954179    EDV56269.2    AE013599    AFH08037.1    CH940667    EDW57212.2    CH933808    KRG04062.1    EDW08344.2    AJWK01008083    AJWK01008084    AJWK01008085    AAF58471.4    CH480816    EDW47614.1    CM000362    EDX06819.1    NEVH01013559    PNF28665.1    QOIP01000008    RLU19662.1    GL766908    EFZ14490.1    LBMM01004203    KMQ92702.1    KK107126    EZA58440.1    GBYB01012122    JAG81889.1    ADTU01013021    KZ288203    PBC33442.1    AAZX01005891    NNAY01000676    OXU27052.1    KQ978251    KYM95969.1    GL451254    EFN79601.1    KQ982548    KYQ55243.1    KQ981153    KYN08936.1    GL443590    EFN61856.1    KQ981993    KYN30753.1    KQ976424    KYM88447.1    GL887888    EGI69649.1    KQ414617    KOC68072.1    LJIG01022559    KRT79930.1    CM004481    OCT65439.1    JARO02000385    KPP78763.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000007151    UP000069940    UP000249989    + More
UP000002320    UP000075900    UP000008820    UP000075885    UP000095301    UP000075881    UP000075920    UP000037069    UP000075880    UP000095300    UP000076408    UP000078200    UP000075883    UP000000673    UP000075840    UP000076407    UP000007062    UP000069272    UP000030765    UP000092443    UP000075886    UP000092460    UP000092444    UP000075884    UP000092445    UP000075882    UP000091820    UP000092462    UP000075902    UP000183832    UP000001819    UP000268350    UP000008744    UP000007801    UP000092461    UP000092553    UP000007798    UP000002282    UP000001070    UP000008711    UP000000803    UP000192221    UP000008792    UP000009192    UP000001292    UP000000304    UP000235965    UP000279307    UP000036403    UP000053097    UP000005205    UP000005203    UP000242457    UP000002358    UP000215335    UP000078542    UP000008237    UP000075809    UP000078492    UP000000311    UP000078541    UP000078540    UP000007755    UP000053825    UP000186698    UP000034805   

PRIDE

H9IZK9    A1Z945   

Pfam

PF10487   Nup188        + More
PF00231   ATP-synt

Interpro

IPR018864   Nucleoporin_Nup188        + More
IPR016024   ARM-type_fold       
IPR000131   ATP_synth_F1_gsu       
IPR035968   ATP_synth_F1_ATPase_gsu       

SUPFAM

SSF48371   SSF48371        + More
SSF52943   SSF52943       

ProteinModelPortal

H9IZK9   A0A2A4JIZ9   A0A194QV96   A0A212EGR6   A0A1Q3F052   A0A182H3N8   + More
B0WH56   A0A1S4FK36   A0A182RX09   Q16YE6   A0A182PSF0   A0A1I8N9V1   A0A182KBZ0   A0A182WAH5   A0A0L0BP56   A0A182J1L8   A0A1I8PXZ0   A0A182YLB8   A0A1A9UP02   A0A182LWA5   W5JQH8   A0A182HP00   A0A182XEX4   Q7Q9K3   A0A182F9N5   A0A084WKU1   A0A1A9YR46   A0A182Q2U3   A0A1B0ALK0   A0A336LW21   A0A1B0GBY2   W8B1M3   A0A182N1Q7   A0A0K8U8T0   A0A1A9ZYS2   A0A182LBK9   A0A1A9X3K7   A0A1B0DHP3   A0A0A1XKU8   A0A034V1W5   A0A182UCX1   A0A1J1IVD6   Q28YW3   N6V887   A0A3B0JPP1   A0A3B0J4Y3   B4GIL0   B3MCV0   A0A1B0CU00   A0A0M5IZG4   B4MPF8   B4P501   A0A034V546   B4J8F7   A0A0J9RBB1   B3NRW7   A0A0B4K859   A0A1W4VQ79   B4MFP1   A0A0Q9XGY3   B4KRS4   A0A1B0CDP6   A1Z945   B4HPN0   B4QDF4   A0A2J7QJ95   A0A3L8DHJ2   E9IY41   A0A0J7KQP7   A0A026WQY4   A0A0C9RG62   A0A158NDU3   A0A088A7W9   A0A2A3EQ96   K7ITB5   A0A232F8X3   A0A195C521   E2BXF3   A0A151X491   A0A195D7T5   E2AXL8   A0A195ERA6   A0A195BPK2   F4W7X9   A0A0L7RAX5   A0A0T6AXZ7   A0A1L8F1N1   A0A0P7UWI8  

PDB

5IJO     E-value=1.78129e-56,     Score=561

KEGG

101740026    K14311 nuclear pore complex protein Nup188 | (RefSeq) nucleoporin NUP188 homolog

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0005623   GO:0017056   GO:0044611   GO:0006606   GO:0006999   GO:0046933   GO:0015986   GO:0045261   GO:0005488   GO:0006508   GO:0008236   GO:0046983   GO:0006518   GO:0016020   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

Length:

1555

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.7449

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00492

outside

1  -  1555

 

 

Pi

261.210883

Theta

190.2698

Tajima's D

1.178244

CLR

0.420069

CSRT

0.705964701764912

Interpretation

Uncertain