Gene

KWMTBOMO02527  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002694

Annotation

PREDICTED:_nucleoporin_NUP188_homolog_[Amyelois_transitella]

Location

Bomo_Chr5(-):4885412-4886881      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.83

CDS

ATGCGGCTCAACCGCAGCGAGTCCCTCACCAGCGTGTCCTCCGCCGCCAGCGCGCTGCCCGGCCTGGACGAGAGGCTGGTCGGCGGCGCGCTCGAAGCCACCACTACGCTGCTCGCAGAACAGGCGCTACTTGCAGTGCGCGATCCGAACGTCCCCGCTCGTCACAAGCAACTCGTCCGCCGGGAGCTCTGCTCTGAACTAGCTCAGTTTCATGATTTCGTCCGCAAGAGAATATTGTGCGCGGCCCATGCGCGCCCGCACCTCGTGCGCAACAAGCTTGGAGCTTGGCCGCTCCCTTCAGACGAAGAGGAAGTCAAAAGGATCGAAGAAGCCAGGAAAGAGGTTAACTCCGCCGCCGACGATGAAGACCAGCGCTCGTTGCCTCCGCCCCCGCCACCGAAACGAGCATCACACGATTCTATGCGCGAATACATTTTACGTAAACATTACTTAGAAAAATGTGCACAAACACCCACAAAAGGACCGCCGTCGCCCGTCTCACATTCGACGCCCGCGTCCGATAAAAAGAAAGAAACATCCAGAAGCTCGAAACGGGTTTCTTGGGCGGAAACTACCAGGGACAGCGATGAAAGCTTAGACAGCTCTCTCCAAGAAATAGAACCAGTATATTCTAATCTCACTGATGTACAAATTAACAATGAAGAAGATTATTTTCATTTCATGTCTGTTGTGTTTCTTTACATTTGTCAAACAGAATTGTGA

Protein

MRLNRSESLTSVSSAASALPGLDERLVGGALEATTTLLAEQALLAVRDPNVPARHKQLVRRELCSELAQFHDFVRKRILCAAHARPHLVRNKLGAWPLPSDEEEVKRIEEARKEVNSAADDEDQRSLPPPPPPKRASHDSMREYILRKHYLEKCAQTPTKGPPSPVSHSTPASDKKKETSRSSKRVSWAETTRDSDESLDSSLQEIEPVYSNLTDVQINNEEDYFHFMSVVFLYICQTEL

Uniprot

H9IZK9   S4PLV5   A0A2A4JIZ9   A0A2H1WJG8   A0A194PFK6   A0A212EGR6   + More
A0A194QV96   A0A0L7LNT8   A0A3S2M0Z9   A0A1Q3F052   A0A182H3N8   B0WH56   A0A182N1Q7   A0A084WKU1   Q16YE6   A0A1S4FK36   A0A182PSF0   A0A182J1L8   A0A182Q2U3   A0A182XEX4   Q7Q9K3   A0A182KBZ0   A0A182WAH5   A0A182HP00   A0A1J1IVD6   A0A182SJ83   A0A182LWA5   A0A1A9UP02   A0A182RX09   B4KRS4   A0A0Q9XGY3   A0A182YLB8   A0A336LW21   A0A1B0CDP6   A0A1A9ZYS2   A0A1B0GBY2   A0A0L0BP56   A0A182F9N5   W5JQH8   A0A1A9YR46   A0A1B0ALK0   B4MFP1   B4J8F7   T1GIK3   A0A0M5IZG4   A0A1W4VQ79  

Pubmed

19121390    23622113    26354079    22118469    26227816    26483478    + More
24438588    17510324    12364791    14747013    17210077    17994087    25244985    26108605    20920257    23761445   

EMBL

BABH01014383    GAIX01000391    JAA92169.1    NWSH01001356    PCG71554.1    ODYU01009069    + More
SOQ53220.1    KQ459606    KPI91808.1    AGBW02015043    OWR40671.1    KQ461103    KPJ09392.1    JTDY01000456    KOB77095.1    RSAL01000082    RVE48548.1    GFDL01014112    JAV20933.1    JXUM01107731    KQ565169    KXJ71256.1    DS231933    EDS27563.1    ATLV01024147    KE525350    KFB50835.1    CH477517    EAT39658.1    AXCN02000987    AAAB01008900    EAA09356.4    APCN01002823    CVRI01000059    CRL03548.1    AXCM01001477    CH933808    EDW08344.2    KRG04062.1    UFQT01000126    SSX20517.1    AJWK01008083    AJWK01008084    AJWK01008085    CCAG010005902    JRES01001578    KNC21791.1    ADMH02000800    ETN64999.1    JXJN01031215    CH940667    EDW57212.2    CH916367    EDW02316.1    CAQQ02065461    CAQQ02065462    CAQQ02065463    CP012524    ALC41498.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000037510    + More
UP000283053    UP000069940    UP000249989    UP000002320    UP000075884    UP000030765    UP000008820    UP000075885    UP000075880    UP000075886    UP000076407    UP000007062    UP000075881    UP000075920    UP000075840    UP000183832    UP000075901    UP000075883    UP000078200    UP000075900    UP000009192    UP000076408    UP000092461    UP000092445    UP000092444    UP000037069    UP000069272    UP000000673    UP000092443    UP000092460    UP000008792    UP000001070    UP000015102    UP000092553    UP000192221   

PRIDE

H9IZK9   

Pfam

PF10487   Nup188        + More
PF00231   ATP-synt

Interpro

IPR018864   Nucleoporin_Nup188        + More
IPR016024   ARM-type_fold       
IPR000131   ATP_synth_F1_gsu       
IPR035968   ATP_synth_F1_ATPase_gsu       

SUPFAM

SSF48371   SSF48371        + More
SSF52943   SSF52943       

ProteinModelPortal

H9IZK9   S4PLV5   A0A2A4JIZ9   A0A2H1WJG8   A0A194PFK6   A0A212EGR6   + More
A0A194QV96   A0A0L7LNT8   A0A3S2M0Z9   A0A1Q3F052   A0A182H3N8   B0WH56   A0A182N1Q7   A0A084WKU1   Q16YE6   A0A1S4FK36   A0A182PSF0   A0A182J1L8   A0A182Q2U3   A0A182XEX4   Q7Q9K3   A0A182KBZ0   A0A182WAH5   A0A182HP00   A0A1J1IVD6   A0A182SJ83   A0A182LWA5   A0A1A9UP02   A0A182RX09   B4KRS4   A0A0Q9XGY3   A0A182YLB8   A0A336LW21   A0A1B0CDP6   A0A1A9ZYS2   A0A1B0GBY2   A0A0L0BP56   A0A182F9N5   W5JQH8   A0A1A9YR46   A0A1B0ALK0   B4MFP1   B4J8F7   T1GIK3   A0A0M5IZG4   A0A1W4VQ79  

KEGG

101740026    K14311 nuclear pore complex protein Nup188 | (RefSeq) nucleoporin NUP188 homolog

GO

GO:0005623   GO:0017056   GO:0044611   GO:0006606   GO:0046933   GO:0015986   GO:0045261  

Length:

240

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00294

Exp number, first 60 AAs:

0.00201

Total prob of N-in:

0.07214

outside

1  -  240

 

 

Pi

61.080124

Theta

55.296579

Tajima's D

1.283053

CLR

0.420789

CSRT

0.737113144342783

Interpretation

Uncertain