Gene

KWMTBOMO02526

Pre Gene Modal

BGIBMGA002695

Annotation

PREDICTED:_maternal_effect_protein_staufen_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr5(-):4866999-4874141      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.021

CDS

ATGCCGACGGTGGAGCTGAACGCGTTGGCGATGAAGTTGTGCCAGCCCGCCATATACACGTCGCTGCCGGCCGTGGCGGGGTGCGGGCGGGGCGCGCGGGGCCGCGGGTACGGCGGCGGCGTGTTCGCGCGCGTGCTGCCGGCGCTCGTGTACCGCGTGCGCGTGGACGTGGGCGGCCGCGCCTGGCTGGGCGAGGGCGCCACGCCGCAAGCCGCGCGACACGACGCGGCGGCGCGCGCGCTGCACGACCTGCGCCCGCACCCCGCGCCCGCCGCCGCCGCGCTCGCGCCGCACGATACCAACGCCGCTACAGACGAAAACGGGGAAGGAGGTGATTTATTGAATTCTGAAGTGAAGTCTCCGGTGTCACTTGTACATGAGATTGCTTTGAAACGAAATCTCACTGTTGATTTTGCTGTCAAATCTGAGCGCGGACCTCCACATATGAGGGTATTCGTGACGACATGCACGGTGGGCGAGATAGAGACGGAGGGCGAGGGCAACGGCAAGAAGGTGTCGAAGCGTCGAGCGGCCGAGCGCATGCTGGAGGAGATGCGGCACCGCTGGCCGCTCGCCGCGCTGCGCCCGCGCCCGCCCGAGCGCCGCCGCCCGCACCCCGCCAAGAAGAAGCCGCGCAATCTAATCAAGGAGGGCAGCGTGTGCAGCGGGTCCGGCGGCGGCAGCCCGGGCGGCGACAACCCCATCTCCCGGCTGGCGGTGGTGCGGCACGCGGCCCGCGCGCGCTCGCCGCACTACGCCGTGCTGGAGGAGCGCGGCGCCGCGCGACGCCGCGAGTTCCTCGTGCGCTGCGACGCGCCGCCGCACTCCGCCACCGGCCGGGGACCCAACAAGAAGACCGCCAAGCGACGCGCCGCGCACAATGTACTTTTAGCAATGGAAATGATAACAAACGGCTCGACTGGCAACACAGCCACAGTCAACGGCTCCGAGCTCAGCACCAGCGCCTCTAGCGATGGAAGTAAATCTAATGGAACCGATAGCAAAAACAAGGTTAGCGATATAGCGGCCAGTGAGACCCGACAGCCGGTTCCGGGCGTGCTACTCATGGATTACCAACAACGAGGAGGAACCCCACAAACACAAACGACTAACGGTGTCACCGATACAGTTACAAATAGCACTAGTAATTCCACTCCAGCTGTGAGCAATAACAGTACCACGACTTCGCCGGGGACGACGCCCGGAGCCAAAGATCAGCTCATGTATCTCTCGCAGCTCCTCGGATTTACAGTGCAGTTTTCAGATTTTCCTAAGCGCAACCACGGGGAGTACCTGTCGCTGGTGTCGCTGTCGACCGAGCCGCCCGTGATGTGCCACGGCGGCGGCGCCTCCACCGCGCACTCGCACGAGCAGTGCGCCCGCGCCGCCCTGCGCGCGCTCGCGCTCATGGGGCTGGACGCGCCCGACCACGCCGCTGTTCCGAGTACTCCGAGCAAACCGAGCGTCGCCATCACAAACGGAATAACAGAGTGA

Protein

MPTVELNALAMKLCQPAIYTSLPAVAGCGRGARGRGYGGGVFARVLPALVYRVRVDVGGRAWLGEGATPQAARHDAAARALHDLRPHPAPAAAALAPHDTNAATDENGEGGDLLNSEVKSPVSLVHEIALKRNLTVDFAVKSERGPPHMRVFVTTCTVGEIETEGEGNGKKVSKRRAAERMLEEMRHRWPLAALRPRPPERRRPHPAKKKPRNLIKEGSVCSGSGGGSPGGDNPISRLAVVRHAARARSPHYAVLEERGAARRREFLVRCDAPPHSATGRGPNKKTAKRRAAHNVLLAMEMITNGSTGNTATVNGSELSTSASSDGSKSNGTDSKNKVSDIAASETRQPVPGVLLMDYQQRGGTPQTQTTNGVTDTVTNSTSNSTPAVSNNSTTTSPGTTPGAKDQLMYLSQLLGFTVQFSDFPKRNHGEYLSLVSLSTEPPVMCHGGGASTAHSHEQCARAALRALALMGLDAPDHAAVPSTPSKPSVAITNGITE

Uniprot

H9IZL0   A0A194QVP3   A0A212EGQ7   A0A194PEV3   D6W7Y5   A0A139WP93   + More
A0A1Y1KDU1   A0A1Y1KDG6   A0A1Y1KA70   A0A1Y1KA74   A0A1W4X2T5   N6U8A9   U4UWI0   V5GT21   H6VUG7   A0A224XIY9   A0A069DWK1   A0A0V0G529   A0A023FAA5   R4WDR9   A0A1J1HYV3   A0A0K8TDZ4   A0A182JUH3   A0A182UGI2   A0A182WJ85   A0A182KRC5   E2A715   A0A182V5B7   A0A182X3R3   A0A026VVA6   A0A3L8D4J2   A0A0A9W467   A0A0A9YH86   A0A0A9YCR2   A0A0J7NVM0   A0A182I3A6   E9IE48   Q7PT34   A0A1S4GW06   A0A151X1K8   A0A195CJM7   A0A158NFF6   A0A195E5J9   A0A195B433   A0A195ETI1   F4W478   A0A087UJT1   A0A1B6KNN6   A0A3R7QWM2   A0A182LSD9   A0A2J7QF76   A0A2J7QF64   A0A2T7PEL5   A0A2J7QF80   A0A2I9LPS0   A0A023GNM1  

Pubmed

19121390    26354079    22118469    18362917    19820115    28004739    + More
23537049    23828787    26334808    25474469    23691247    20966253    20798317    24508170    30249741    25401762    21282665    12364791    21347285    21719571    29248469   

EMBL

BABH01014383    BABH01014384    KQ461103    KPJ09394.1    AGBW02015043    OWR40673.1    + More
KQ459606    KPI91807.1    KQ971307    EFA11564.2    KYB29818.1    GEZM01087944    JAV58380.1    GEZM01087943    JAV58381.1    GEZM01087945    JAV58379.1    GEZM01087942    JAV58382.1    APGK01039173    KB740967    ENN76886.1    KB632399    ERL94625.1    GALX01003679    JAB64787.1    JN882649    AFA41503.1    GFTR01007874    JAW08552.1    GBGD01000614    JAC88275.1    GECL01002956    JAP03168.1    GBBI01000305    JAC18407.1    AK417918    BAN21133.1    CVRI01000035    CRK92730.1    GBRD01002014    GBRD01002013    JAG63807.1    GL437252    EFN70747.1    KK107796    EZA47672.1    QOIP01000013    RLU15144.1    GBHO01042321    GBHO01009618    JAG01283.1    JAG33986.1    GBHO01040540    GBHO01034776    GBHO01014709    GBHO01011831    GBHO01006875    JAG03064.1    JAG08828.1    JAG28895.1    JAG31773.1    JAG36729.1    GBHO01040555    GBHO01034721    GBHO01032170    GBHO01018238    GBHO01014711    GBHO01014705    GBHO01014704    GBHO01009625    JAG03049.1    JAG08883.1    JAG11434.1    JAG25366.1    JAG28893.1    JAG28899.1    JAG28900.1    JAG33979.1    LBMM01001364    KMQ96440.1    APCN01000204    GL762556    EFZ21197.1    AAAB01008807    EAA04622.5    KQ982585    KYQ54303.1    KQ977642    KYN00935.1    ADTU01001532    KQ979609    KYN20172.1    KQ976625    KYM79035.1    KQ981979    KYN31466.1    GL887491    EGI71074.1    KK120142    KFM77620.1    GEBQ01026908    JAT13069.1    QCYY01001055    ROT80874.1    AXCM01006463    NEVH01015301    PNF27242.1    PNF27241.1    PZQS01000004    PVD31863.1    PNF27239.1    GFWZ01000396    MBW20386.1    GBBM01000645    JAC34773.1   

Proteomes

UP000005204    UP000053240    UP000007151    UP000053268    UP000007266    UP000192223    + More
UP000019118    UP000030742    UP000183832    UP000075881    UP000075902    UP000075920    UP000075882    UP000000311    UP000075903    UP000076407    UP000053097    UP000279307    UP000036403    UP000075840    UP000007062    UP000075809    UP000078542    UP000005205    UP000078492    UP000078540    UP000078541    UP000007755    UP000054359    UP000283509    UP000075883    UP000235965    UP000245119   

PRIDE

H9IZL0   

Pfam

PF00035   dsrm        + More
PF16482   Staufen_C
PF00651   BTB
PF00106   adh_short

Interpro

IPR032478   Staufen_C        + More
IPR014720   dsRBD_dom       
IPR011333   SKP1/BTB/POZ_sf       
IPR000210   BTB/POZ_dom       
IPR036291   NAD(P)-bd_dom_sf       
IPR002347   SDR_fam       

SUPFAM

SSF54695   SSF54695        + More
SSF51735   SSF51735       

CDD

cd00048  DSRM

ProteinModelPortal

H9IZL0   A0A194QVP3   A0A212EGQ7   A0A194PEV3   D6W7Y5   A0A139WP93   + More
A0A1Y1KDU1   A0A1Y1KDG6   A0A1Y1KA70   A0A1Y1KA74   A0A1W4X2T5   N6U8A9   U4UWI0   V5GT21   H6VUG7   A0A224XIY9   A0A069DWK1   A0A0V0G529   A0A023FAA5   R4WDR9   A0A1J1HYV3   A0A0K8TDZ4   A0A182JUH3   A0A182UGI2   A0A182WJ85   A0A182KRC5   E2A715   A0A182V5B7   A0A182X3R3   A0A026VVA6   A0A3L8D4J2   A0A0A9W467   A0A0A9YH86   A0A0A9YCR2   A0A0J7NVM0   A0A182I3A6   E9IE48   Q7PT34   A0A1S4GW06   A0A151X1K8   A0A195CJM7   A0A158NFF6   A0A195E5J9   A0A195B433   A0A195ETI1   F4W478   A0A087UJT1   A0A1B6KNN6   A0A3R7QWM2   A0A182LSD9   A0A2J7QF76   A0A2J7QF64   A0A2T7PEL5   A0A2J7QF80   A0A2I9LPS0   A0A023GNM1  

PDB

6HTU     E-value=5.30063e-19,     Score=233

KEGG

101740158    K17597 double-stranded RNA-binding protein Staufen | (RefSeq) maternal effect protein staufen

GO

GO:0003723   GO:0016021  

Length:

497

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03667

Exp number, first 60 AAs:

0.0362

Total prob of N-in:

0.00249

outside

1  -  497

 

 

Pi

221.472669

Theta

167.51928

Tajima's D

1.096899

CLR

0.138699

CSRT

0.686465676716164

Interpretation

Uncertain