Silkworm Genome Informatics Database

Gene

KWMTBOMO02507 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002703

Annotation

32_kDa_apolipoprotein_precursor_[Bombyx_mori]

Location

Bomo_Chr5(-):3763197-3764375 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.463

CDS

ATGCAGAACGCCTACGCAGTGCTAGATCGATTCAAGATTTCTAGGACATTCTTCGTGAAAACCAACCAGGCTGACTGCACGATCCTACCCGACCCGGTGGCCATCCCGATAGAAGCGAAGTCTGCTGATGTTATTAAGAACGTAGATATTAAAGTTAAAGAGAAAGAGCCCGTAGAGGATTCGGATTCTGTTAAGAAGCAAATAATCGACGAAGTCGTGGAAGAACGGTCGGCGGTGCCAGAAATTTCTTTTGAACCCAAACCCGTACCTGTACCAGAAATGATATTGACAGAGAACGAGAAAAAAGGGGAAAATATGGAAGAACCTAAAGCGGAAGACAAGGCAGAAGCAGTGGAACCTAAGGCTGTTGAAACCACCACAATATAA

Protein

MQNAYAVLDRFKISRTFFVKTNQADCTILPDPVAIPIEAKSADVIKNVDIKVKEKEPVEDSDSVKKQIIDEVVEERSAVPEISFEPKPVPVPEMILTENEKKGENMEEPKAEDKAEAVEPKAVETTTI

Similarity

Belongs to the calycin superfamily. Lipocalin family.

Uniprot

H9IZL8 B9VTR5 A0A2A4JUV9 A0A2A4JUH0 A0A0L7LHU6 A0A2H1WZF6 + More
A0A212FG74 A0A194PGG0 A0A194QVB0 B0X2C5 A0A0J7NQV0 E2BV02 B0WRA7 A0A182NU62 A0A195C8Y6 A0A0C9R4U6 A0A151X5N1

Pubmed

19121390 26227816 22118469 26354079 20798317

EMBL

BABH01014467 FJ602775 ACM24341.1 NWSH01000617 PCG75273.1 PCG75274.1 + More
JTDY01001081 KOB74934.1 ODYU01012209 SOQ58392.1 AGBW02008706 OWR52732.1 KQ459606 KPI91794.1 KQ461103 KPJ09407.1 DS232286 EDS39148.1 LBMM01002434 KMQ94840.1 GL450776 EFN80482.1 DS232053 EDS33291.1 KQ978072 KYM97292.1 GBYB01011314 JAG81081.1 KQ982515 KYQ55590.1

Proteomes

UP000005204 UP000218220 UP000037510 UP000007151 UP000053268 UP000053240 + More
UP000002320 UP000036403 UP000008237 UP000075884 UP000078542 UP000075809

PRIDE

H9IZL8 B9VTR5

Pfam

PF00061 Lipocalin + More
PF08212 Lipocalin_2

Interpro

IPR000566   Lipocln_cytosolic_FA-bd_dom        + More
IPR012674   Calycin
IPR003057   Invtbrt_color
IPR022272   Lipocalin_CS
IPR022271   Lipocalin_ApoD
IPR002969   ApolipopD

SUPFAM

SSF50814 SSF50814

Gene 3D

2.40.128.20

ProteinModelPortal

H9IZL8 B9VTR5 A0A2A4JUV9 A0A2A4JUH0 A0A0L7LHU6 A0A2H1WZF6 + More
A0A212FG74 A0A194PGG0 A0A194QVB0 B0X2C5 A0A0J7NQV0 E2BV02 B0WRA7 A0A182NU62 A0A195C8Y6 A0A0C9R4U6 A0A151X5N1

KEGG

100286767 K03098 apolipoprotein D and lipocalin family protein | (RefSeq) 32 kDa apolipoprotein

GO

GO:0031409 GO:0007568 GO:0008289 GO:0006869

Length:

128

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00023

Exp number, first 60 AAs:

0.00023

Total prob of N-in:

0.37514

outside

1 - 128

Pi

213.101736

Theta

142.807256

Tajima's D

1.090198

CLR

0

CSRT

0.683065846707665

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
29197581	SAVPEISFEPKPVPVPEMIITENEK	96.15	6e-11
31223520	TNQADCTILPDPVAIPIEAK	100.00	8e-11
29197581	SAVPEISFEPK	96.00	3e-10
31223520	ERLPSLMAMQNAYAVLDR	100.00	3e-08
29197581	FIGTWYEAER	100.00	3e-06

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics