SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02505
Pre Gene Modal
BGIBMGA002586
Annotation
PREDICTED:_uncharacterized_protein_LOC106133542_[Amyelois_transitella]
Location in the cell
PlasmaMembrane   Reliability : 4.664
 

Sequence

CDS
ATGGCCAAGTCGATCGAAGACAAGAAAACTAGTGAAGATAATACCAACATGGACGGGTACAGCGACGAGGAACTCGGCCGCATCGGGAGGTTCATGGTCTGGATGCGCATCAATCCGAACTTAATTATGTTAAAAGTGACTCTTTTTGTGATGTACGGAGCTACTGCTTCTCTTCTACCTTATTTAACGATTCACATGCAGAGTATAGGTTTGACTGTTCCTGAAATATCTTTTGTTTATCTAGCTTTACCGTTTACGACATTTCTTAGTCCTCCGATAACTGGATTTTTGGTGGATCGGTTTGGGGAGTATAAGCCTGTTGTGATAACGGCTCTTATTTTGAACGCCGCATTCCATCATTCTTTACTTCTGATACCTCACCAGGAGACGCCTGGTGTTATGCCATCGGCATACGTAATGAGACACCCGATCACGAACAGTGTAGAGATCTGGTGGAGCCCTTGTCCGAGCAGAGAGTGTCCTGATGAAGATGAAACCGTTGATTTTGTACTGGACCGTTGCGTAGATCACTGTCAATTGTTTAAGCCTCCAGAGAGTCCTTTCACGAAACCTTCGGGAGACGATGAAAACGATGACCTTGACTTTCATATCAGCCACAAGATCCAACCACCGAACTTATCCAACAGCAGCCTTTTGAATTTGACTGATAGCGATGAAGATTACAATGATGCTGCATTCTTCTTGATAGAAGTACACGATGATTTAGGTGAACCAAAAGAGCAGCTAGGGATCGAAATGGAAAGAGACGAGGATGATCAAGTAACGGATTTTCGATCGAGATTTGGCGAGAAGCTTCTGATAACTCAAGGCGTGAATATAACTGCGCTCGACAAGGAAGACCTCAGATGTGGAGGTCTTGTCATGTTACACAACATGACGAAGCTTTCACAGCAAAGGCTGGAGATACTGTCTGCAGATTGCATGGTCCAAAAATGTGATTTTAGGAGGGGAGGTCCAGAAATATGCCCACCAGATTACAAGGAAAGTGACGATAAAACCTTCTACATATATTTCTTTCTGCGCTTCATGGGTACTATCATGCTATCAGCTGGCGTTACGATAATGGATCCCATAGCTTTGACCATGATACAGAAATACGGCGGCGATTTCGGAAGGGAAAGATTGTTTTCGAGTATCGGAATGGCTATATTTTCACCTATCACCGGTATGCTTATAGATATGGGTAGCAAACAAGTCGGTTACACCGATTATTCTGCTGCGTTTTACACGTACGACGTTTTGTTGTTGATATCGGCAATCACGGTCGCCGTGATGCCATTAGGAGCTAAGCTGCCCGCCGACAACCTCCTAAGGGATTTGGTCAACATCATAAAAATGCCACACATCATAATATTTATATTTTTCCTATTCGCCCTCGGAAACTTTTGGGGATTTATCGAGTCTTATCTGTTCATTTATTTAAAGGAATTAGGAGCACCTAATTTTTTGTTAGGAATAACCGTGACCGTGGGCACATTGAGCAGCATTCCTTTTCTGTACGGGGCGGATGCGATCACCGCTCGCATTGGCCACGTCAATGTTATCATCGTTGCGTTCTTCTCCCACGCCGCCAGGCTCGTCGGCTATTCGTTTATCGAGAATTCATGGTGGTGTTTTCCATTCGAAGCGATGGAATCTCTCTCGGTGCATTTAATGTGGGTAGCAGCAGCCACTTACTGCGCTATGTTGGCTCCTAAAAGTCTACTGGCAACACTTATTGGTGTTTTGGGAATGGCGCATTTTAGTCTTGGGAGAGGTAGCGGTAGTTTTGGTGGCGGTTTACTCATTGCTCAGCTGGGTACTCGAGAAGCATTTCGCTACATGGGACTGATCGCTTTCCTTGGGGGAATATTATACGGACTATTGCATTACTTTTGGCTGAGGAATATCAGTATGACGGGAATCGATGATGCCTGTGAACAGGATACGGAAAGTGGTGAAGGTGACAAGATGAACAGTGAACCACTGAGAAAAGATGCTGAAACGATGGTATCTCTAGAGCGGCTTCATATGTTCACACGACTGAATCCTTTGGGTTCTCTGCACTCATTGCCAAGAGGTTCTAGGTCAAGGTTCTCACAAGGGGACATCAATGAATGTAGAAGTCGCAGTGGCAGTAACAGTCAGCGACGAGGAAGTAATTACGAGGGTTCGGCTTCAAAGGGGGATATGCTTCAATCTGCGTTAGAGATCAGTAACCATCATGGAAAAGGACACATATCTAATCCAGTTCTATCGATCTCCATTCGAAATCCAAACGTTTATAAGCAGAACCACAGTGCACCGAAGCTAGCAATGGCTGGTCTGGCGCAACGCAACAATATCTCCCAACCAATCCTATCTGAATTCGATTCGAGACGCCGAGATTCCATACCAGAAGAGGCAGACGAAGACAAACTCATGCCTCCAGCGAAAGCACCAACGAAGACTAAAAGCGACCATCTTCCCCCACCCCCCAGCTATGATGAGGCTATTAATGAGCACAGGAAAAGCTGGCATTCCGATGACAGCACACCAGCTTAG
Protein
MAKSIEDKKTSEDNTNMDGYSDEELGRIGRFMVWMRINPNLIMLKVTLFVMYGATASLLPYLTIHMQSIGLTVPEISFVYLALPFTTFLSPPITGFLVDRFGEYKPVVITALILNAAFHHSLLLIPHQETPGVMPSAYVMRHPITNSVEIWWSPCPSRECPDEDETVDFVLDRCVDHCQLFKPPESPFTKPSGDDENDDLDFHISHKIQPPNLSNSSLLNLTDSDEDYNDAAFFLIEVHDDLGEPKEQLGIEMERDEDDQVTDFRSRFGEKLLITQGVNITALDKEDLRCGGLVMLHNMTKLSQQRLEILSADCMVQKCDFRRGGPEICPPDYKESDDKTFYIYFFLRFMGTIMLSAGVTIMDPIALTMIQKYGGDFGRERLFSSIGMAIFSPITGMLIDMGSKQVGYTDYSAAFYTYDVLLLISAITVAVMPLGAKLPADNLLRDLVNIIKMPHIIIFIFFLFALGNFWGFIESYLFIYLKELGAPNFLLGITVTVGTLSSIPFLYGADAITARIGHVNVIIVAFFSHAARLVGYSFIENSWWCFPFEAMESLSVHLMWVAAATYCAMLAPKSLLATLIGVLGMAHFSLGRGSGSFGGGLLIAQLGTREAFRYMGLIAFLGGILYGLLHYFWLRNISMTGIDDACEQDTESGEGDKMNSEPLRKDAETMVSLERLHMFTRLNPLGSLHSLPRGSRSRFSQGDINECRSRSGSNSQRRGSNYEGSASKGDMLQSALEISNHHGKGHISNPVLSISIRNPNVYKQNHSAPKLAMAGLAQRNNISQPILSEFDSRRRDSIPEEADEDKLMPPAKAPTKTKSDHLPPPPSYDEAINEHRKSWHSDDSTPA

Summary

Pfam
PF12832   MFS_1_like
Interpro
IPR020846   MFS_dom        + More
IPR036259   MFS_trans_sf       
IPR024989   MFS_assoc_dom       
SUPFAM
SSF103473   SSF103473       
PDB
2Y5Y     E-value=0.0797033,     Score=87

Ontologies

Topology

Length:
847
Number of predicted TMHs:
10
Exp number of AAs in TMHs:
235.05099
Exp number, first 60 AAs:
19.77278
Total prob of N-in:
0.92851
POSSIBLE N-term signal
sequence
inside
1  -  40
TMhelix
41  -  63
outside
64  -  75
TMhelix
76  -  98
inside
99  -  344
TMhelix
345  -  367
outside
368  -  381
TMhelix
382  -  401
inside
402  -  413
TMhelix
414  -  436
outside
437  -  455
TMhelix
456  -  478
inside
479  -  484
TMhelix
485  -  507
outside
508  -  516
TMhelix
517  -  539
inside
540  -  559
TMhelix
560  -  582
outside
583  -  611
TMhelix
612  -  634
inside
635  -  847
 
 

Population Genetic Test Statistics

Pi
242.733909
Theta
158.271616
Tajima's D
1.056963
CLR
0.786956
CSRT
0.678666066696665
Interpretation
Uncertain
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