SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02501  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA002708
Annotation
PREDICTED:_conserved_oligomeric_Golgi_complex_subunit_3_[Bombyx_mori]
Full name
Conserved oligomeric Golgi complex subunit 3      
Alternative Name
Component of oligomeric Golgi complex 3
Location in the cell
Cytoplasmic   Reliability : 1.499 Golgi   Reliability : 1.031 Nuclear   Reliability : 1.53
 

Sequence

CDS
ATGGATACGATGAGTTTAAAAGAAATACAAAGCAAGTTATTGTTGTGGGAATCGTCTGAAAATCCACTTGCGCCACTCAACTCGGACCAGAGGGAAGCGATTTTGGATCTTGAATCTTTGATTTTAGGAGTTAATGATGAGGGTGGAGAAAATGGACCAATAGAAAAAGAGACTGTTGACCAAAAATCTATACCATCTGTAGATACAACATATGACTTTTTGGAATGGTATGAGCGACTCTGTGATGATAATATGAAGACTGAAGATGTCCCTTACCAATGCTATTATAAACAATTAGAAGATAGAAGAAATGAATGTATTTCTTTAAACGAACAGATCAACGAGGCGATGTCGGATCTGCATAAACTAACAGAGCAATACAATTTTGTTTCAAATAAAACAAATGCTCTACACAACATGAGTGAGCAGCTACTGGCTGATCAAAATAAACTATCTGGTATAGGAGACGACATAAAAAAAAGGCTTCATTATTTCACGCAAGTGGAGCATTTGTCGCAACGCCTCAACAGCCCAACTATGTCGGTCAATAGTGACGCATTCTTTAATGTACTGGCAAAGATCGACGAGTGCTTGGATTATATGAGAGAGAACAGCAACTACAAAGAGTCCCACACGTATCTAGTGAAGTATCGTCATCTGCAAAATCGTGCGATTTCCGTGATACGTTCGTACGTGAACCACGTGTTGGACCACGCGACGGAGCAGGTGCTGGGGCCGCAGGAGGACGCCGGCTCCGAGGAAGAGAACGTGGACACAGCTTACGCGGTCTTCTTCGGGAAATTTCAAGCTGCCGCCCCGAAGCTAAGGAAAGTCATAGGGGAAATCGAACAGCGAGCCGAAACGAATTCTGACTACGCGTCGCTGCTGTCGGACATGGAGCGCGAGTACGCGTCGCGGCGGCGGCGGGTGGCGGGCGGCGCGGTGGGGGGCGCGGTGGGCGGCGCGGCGCGGCGGCTGGCGCGGGACAGCTGCGCCCTGCTGCGCGCGTGCTGCTCGCTGCTCGCGCACGCCTGCCGCGACGAGTGCGCCCTCTACCATCACTTCTTCACGCAATCCTCACAGGCCCTTGAAGAATACCTGCAGTCCCTCTGCAACGGCTTATACGAAACTCTACGGCCGCACATCATCCACATCAACCATTTGGAAACGCTCGCCGAGTTGTGTGTCATACTGCGGATCGAAGTTATCGAGGAACAAGTCAACAACGACCCGGTGAGTCTGCGCGCGCTGGGCACGTGCGCGGGCGCGCTGCTGCAGGACGCGGCGGAGCGGCTGGTGTTCCGCGCGCACGTGCACCTCCGCGCCGACGTGCTGCTGTACCGCCCCGCGCCCGGCGACCTCGCCTACCCCAACAAGCTGCTCATGATGGAGCAAATCGCGCTCTCCATTCAAGAGCAGAGCCTGAAGCGGAGCGACTCGCGCAACTCCATGGTGTCTGACGTGTCGGCCACGTCGCAAGAGGTCGCCAACATCAACGTTGAGGCGCAGCGCCGACCTCACGCGTCCCCGGCCGACCTGCACGGCATGTGGTACCCCACCGTCCGGAGAACCCTGGCGGCCTTGTCGCGCCTGTACAGGTGCTTGGAGAAGAGAGTCTTCCAGGGTCTCGCTCAAGAAGCCATCTCGCTGTGCGTCCAGAGCGTGGACACCGCGGCCAGGCTAATAACGGCAAACGCGACCAGCGTCGACGGCGAACTGTTTCAAATAAAACACTTGCTGATCTTGAGGGAGCAGATCGCGCCGTTTCAAGTCGACTTCGTGATCAAAGAGACGACCTTGGACTTTAGTAACGTCAAAAACGCAGCCTACGGCCTCATACAGAGGCCCCGGCAGATATTCTCGCTCAGTTCGAACAACGCGCTGCTGGAGTTCCTCCTGGAGGGGACGCCGATGGTCCGGGAGCATCTGCTGGACTCGAGGAAGGAAGTGGACAGGCAGCTGAAGAGCTGCTGTGAAACGTTCATCAAGAACGCGACGGAGCTGCTGGCCGGGCCCATGGCCGTGTTCACTGACAAGGCTCAAGCATTCACACCGATAGACCAGTTAAAGTCTGAGCCCTGGGCGACGCCTGAACAACTAGCGGTTGTCGTTAAAGAAGTACAAAAGCGTATAAAAGCTCATCTCGCTCCGTTGCAGCGCTCGATGCAGTTGTACTTAGCCAATAAGGAGACTGAATTTATCTTGTTCAAGCCGATTAGGAATAACGTTGTCGGCTACTTCGTCCAAATAGAACAACTTCTGGTGAACGCTGGCTACTCGTACGAGGATACTCTGATTGTCGCGTGTCCCACTCCTGAGCAAATATCAGTTTTTATATCATCTGCTAGCCTTATCAGCCACAGTGAGCCAGTGTTGCCATACGGCACTAAGGCGAAGCCAAGTGTGGTCCGTAAACCGAGTGTTACCAGCGTACCGGAGAAACTAGAAGAAAAGGCGACGGCGGAGACGGTTTAA
Protein
MDTMSLKEIQSKLLLWESSENPLAPLNSDQREAILDLESLILGVNDEGGENGPIEKETVDQKSIPSVDTTYDFLEWYERLCDDNMKTEDVPYQCYYKQLEDRRNECISLNEQINEAMSDLHKLTEQYNFVSNKTNALHNMSEQLLADQNKLSGIGDDIKKRLHYFTQVEHLSQRLNSPTMSVNSDAFFNVLAKIDECLDYMRENSNYKESHTYLVKYRHLQNRAISVIRSYVNHVLDHATEQVLGPQEDAGSEEENVDTAYAVFFGKFQAAAPKLRKVIGEIEQRAETNSDYASLLSDMEREYASRRRRVAGGAVGGAVGGAARRLARDSCALLRACCSLLAHACRDECALYHHFFTQSSQALEEYLQSLCNGLYETLRPHIIHINHLETLAELCVILRIEVIEEQVNNDPVSLRALGTCAGALLQDAAERLVFRAHVHLRADVLLYRPAPGDLAYPNKLLMMEQIALSIQEQSLKRSDSRNSMVSDVSATSQEVANINVEAQRRPHASPADLHGMWYPTVRRTLAALSRLYRCLEKRVFQGLAQEAISLCVQSVDTAARLITANATSVDGELFQIKHLLILREQIAPFQVDFVIKETTLDFSNVKNAAYGLIQRPRQIFSLSSNNALLEFLLEGTPMVREHLLDSRKEVDRQLKSCCETFIKNATELLAGPMAVFTDKAQAFTPIDQLKSEPWATPEQLAVVVKEVQKRIKAHLAPLQRSMQLYLANKETEFILFKPIRNNVVGYFVQIEQLLVNAGYSYEDTLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPEKLEEKATAETV

Summary

Description
Involved in ER-Golgi transport.
Subunit
Component of the conserved oligomeric Golgi complex which is composed of eight different subunits and is required for normal Golgi morphology and localization.
Similarity
Belongs to the COG3 family.
Keywords
Complete proteome   Golgi apparatus   Membrane   Protein transport   Reference proteome   Transport   Phosphoprotein  
Feature
chain  Conserved oligomeric Golgi complex subunit 3
EMBL
BABH01014476    BABH01014477    BABH01014478    NWSH01000617    PCG75280.1    AGBW02013516    + More
OWR43308.1    KQ459606    KPI91780.1    GANO01000739    JAB59132.1    CM000157    EDW87538.1    CH477487    EAT40119.1    JXUM01061258    KQ562142    KXJ76586.1    CH954177    EDV57621.1    CH676463    EDW44611.1    CM002910    KMY87892.1    CH902624    EDV33230.1    CH963920    EDW78166.1    KK852415    KDR24411.1    CH479180    EDW28543.1    CH933807    EDW11461.1    GGFJ01001599    MBW50740.1    GGFJ01001598    MBW50739.1    AE014134    AY051613    GGFJ01001600    MBW50741.1    CH379060    EAL33473.1    GAMC01007638    JAB98917.1    JXJN01024952    CH940649    EDW64786.1    CH916368    EDW04049.1    OUUW01000004    SPP79839.1    GBXI01005945    GBXI01004650    JAD08347.1    JAD09642.1    GDHF01028787    JAI23527.1    AXCM01000259    GGFM01003762    MBW24513.1    GGFK01006474    MBW39795.1    ADMH02001344    ETN62947.1    AAAB01008978    EAA13620.5    JRES01001272    KNC24040.1    GGFK01006482    MBW39803.1    GGFK01006643    MBW39964.1    CP012523    ALC38893.1    DS231958    EDS29041.1    APCN01002694    GEBQ01015513    JAT24464.1    AXCN02000286    ATLV01026741    KE525419    KFB53319.1    GDAI01000362    JAI17241.1    GECZ01007175    JAS62594.1    CM000361    EDX03615.1    JXUM01010952    JXUM01010953    KQ560320    KXJ83077.1    GFDF01003665    JAV10419.1    GFDF01003669    JAV10415.1    GBXI01013768    JAD00524.1    SPP79840.1    AJWK01025537    AJWK01025538    DS235886    EEB20407.1    NNAY01000294    OXU29409.1    LBMM01007821    KMQ89398.1    KQ434787    KZC05319.1    ADTU01022722    CVRI01000035    CRK92758.1    KQ760551    OAD59852.1    GL449813    EFN81917.1    KQ414792    KOC60747.1    GL766616    EFZ14886.1    GL887844    EGI69846.1    GL437703    EFN70102.1    KQ976745    KYM75450.1    KZ288285    PBC29452.1    KQ982409    KYQ56698.1    KQ976914    KYN07123.1    KK107238    EZA54844.1    QOIP01000007    RLU20272.1    KQ982014    KYN30665.1    KQ978730    KYN28936.1    JH431849    GDIQ01164301    GDIQ01147421    GDIQ01114626    GDIQ01113334    GDIQ01051050    JAN43687.1    GDIQ01148864    JAL02862.1    GDIQ01148863    JAL02863.1    GDIQ01001533    JAN93204.1    GDIQ01228538    GDIQ01164300    GDIQ01114625    GDIQ01113333    GDIQ01095424    GDIQ01051049    JAK87425.1    GDIQ01200752    GDIQ01144524    GDIQ01144522    GDIQ01098682    GDIQ01049603    GDIQ01046859    JAL07204.1    GDIQ01200751    GDIQ01199505    GDIQ01144523    GDIQ01115830    GDIQ01101142    GDIQ01049604    GDIQ01042352    JAN45133.1    GDIP01083792    JAM19923.1   
Pfam
PF04136   Sec34
Interpro
IPR007265   COG_su3        + More
IPR027267   AH/BAR_dom_sf       
IPR016159   Cullin_repeat-like_dom_sf       
SUPFAM
SSF103657   SSF103657        + More
SSF74788   SSF74788       

Ontologies

Topology

Subcellular location
Golgi apparatus membrane  
Length:
824
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00655
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00034
outside
1  -  824
 
 

Population Genetic Test Statistics

Pi
200.906034
Theta
172.624794
Tajima's D
-1.837799
CLR
241.899812
CSRT
0.0264986750662467
Interpretation
Possibly Positive selection
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