Gene

KWMTBOMO02488

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr5(+):3281972-3283299      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.233

CDS

ATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCTTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCAAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGTTAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCGGTCTCACGGATCGTTTGGAACCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGGTCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAGCGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA

Protein

MTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSLVQERRSKLVSEVENSLGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPGLTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR

Uniprot

Q6UV17   Q5KTM5   A0A2H1VFZ3   A0A0P4VXU0   A0A3D5S1K1   J9GT67   + More
T2M6M7   A0A1Y1S3P2   A0A1E1XGQ7   A0A131Y4I8   A0A131Y4Q4   A0A147BU27   A0A147BJQ0   A0A0P4VVV8   A0A1E1XN74   A0A1E1XNW6   A0A1E1XNL1   A0A1E1X2T1   A0A147BNQ9   A0A147BJ69   A0A090XE26   A0A131XQR9   A0A131XRE4   A0A2B4RTL1   A0A131Y3E3   A0A131XT39   A0A0P4VTV9   A0A2H9T3F5   A0A1E1X2P5   A0A2G8KET5   A0A1G4M5I2   A0A147BQ97   A0A1G4M3N1   A0A147BNC9   A0A147BLD9   A0A2I0UC10   A0A147BB29   A0A147BJZ1   A0A1E1XGC7   A0A0K8RPQ6   A0A1E1X2R3   A0A2H9T4Q5   A0A1E1XVU2   A0A1E1XPS6   A0A147BBR8   A0A2H9T4Y5   A0A1E1XM20   W4ZGQ7   A0A147BMA3   A0A147BMF5   A0A1E1XN53   A0A2S6A1F0   A0A2H9T4F1   A0A147BPB7   A0A2H9T2R7   A0A2H9T5P0   K7F115   A0A2H9T2Z5   K7EZ61   A0A210QEX7   K7EXB4   A0A147BI04   K7EW64   A0A2H9T2V7   A0A131XV56   W4ZIH4   K7EYW0   K7F016   K7EWB0   A0A2B4RFN8   A0A147BKM4   K7EWE8   K7F0H6   A0A147BJE1   W4Z5Z2   A0A1E1WW75   K7F012   A0A147BK71   A0A147BRL4   A0A147BL51   K7F0V3   K7EY14   K7EX25   K7EY42   A0A147BKN8   K7EY70   A0A2I0UEM9   K7EZY9  

Pubmed

30148503    23251564    24065732    28345194    28503490    29652888    + More
29209593    25970599    29150518    29023486    17381049    28812685   

EMBL

AY359886    AAQ57129.1    AB126052    BAD86652.1    ODYU01002162    SOQ39302.1    + More
GDRN01105059    JAI57791.1    DPOC01000269    HCX22453.1    AMCI01002135    EJX03495.1    HAAD01001474    CDG67706.1    LWDP01000391    ORD92879.1    GFAC01000919    JAT98269.1    GEFM01002394    JAP73402.1    GEFM01002324    JAP73472.1    GEGO01001118    JAR94286.1    GEGO01004433    JAR90971.1    GDRN01111277    JAI56804.1    GFAA01002657    JAU00778.1    GFAA01002479    JAU00956.1    GFAA01002514    JAU00921.1    GFAC01005646    JAT93542.1    GEGO01003312    JAR92092.1    GEGO01004630    JAR90774.1    GBIH01002577    JAC92133.1    GEFM01006417    JAP69379.1    GEFM01005882    JAP69914.1    LSMT01000297    PFX20951.1    GEFM01002419    JAP73377.1    GEFM01006421    JAP69375.1    GDRN01111334    JAI56796.1    NSIT01000412    PJE77717.1    GFAC01005665    JAT93523.1    MRZV01000639    PIK46517.1    FLMD02000280    SCV66640.1    GEGO01002473    JAR92931.1    FLMD02000154    SCV66010.1    GEGO01003111    JAR92293.1    GEGO01003794    JAR91610.1    KZ505886    PKU43598.1    GEGO01007438    JAR87966.1    GEGO01004295    JAR91109.1    GFAC01000861    JAT98327.1    GADI01001229    JAA72579.1    GFAC01005670    JAT93518.1    NSIT01000239    PJE78188.1    GFAA01000066    JAU03369.1    GFAA01002385    JAU01050.1    GEGO01007187    JAR88217.1    NSIT01000218    PJE78268.1    GFAA01003161    JAU00274.1    AAGJ04096877    GEGO01003518    JAR91886.1    GEGO01003427    JAR91977.1    GFAA01002726    JAU00709.1    PSZC01000087    PPJ25136.1    NSIT01000271    PJE78081.1    GEGO01002794    JAR92610.1    NSIT01000538    PJE77518.1    NSIT01000164    PJE78524.1    AGCU01164164    NSIT01000477    PJE77602.1    AGCU01081420    NEDP02004020    OWF47171.1    AGCU01093320    GEGO01005479    JAR89925.1    AGCU01055496    NSIT01000532    PJE77527.1    GEFM01006250    JAP69546.1    AAGJ04095885    AGCU01046616    AGCU01148809    AGCU01168427    LSMT01000588    PFX15986.1    GEGO01004061    JAR91343.1    AGCU01003726    AGCU01096477    GEGO01004497    JAR90907.1    AAGJ04079835    GFAC01007905    JAT91283.1    AGCU01135984    GEGO01004248    JAR91156.1    GEGO01002025    JAR93379.1    GEGO01003895    JAR91509.1    AGCU01111641    AGCU01156992    AGCU01018596    AGCU01190758    GEGO01004056    JAR91348.1    AGCU01143107    KZ505822    PKU44500.1    AGCU01064953   

Proteomes

UP000225706    UP000230750    UP000007110    UP000239874    UP000007267    UP000242188    + More

PRIDE

Q6UV17    Q5KTM5   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF08159   NUC153
PF03372   Exo_endo_phos
PF01425   Amidase

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036322   WD40_repeat_dom_sf       
IPR040382   NOL10/Enp2       
IPR012580   NUC153       
IPR001680   WD40_repeat       
IPR000120   Amidase       
IPR036928   AS_sf       
IPR023631   Amidase_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF50978   SSF50978       
SSF75304   SSF75304       

Gene 3D

3.60.10.10     3.90.1300.10    

ProteinModelPortal

Q6UV17   Q5KTM5   A0A2H1VFZ3   A0A0P4VXU0   A0A3D5S1K1   J9GT67   + More
T2M6M7   A0A1Y1S3P2   A0A1E1XGQ7   A0A131Y4I8   A0A131Y4Q4   A0A147BU27   A0A147BJQ0   A0A0P4VVV8   A0A1E1XN74   A0A1E1XNW6   A0A1E1XNL1   A0A1E1X2T1   A0A147BNQ9   A0A147BJ69   A0A090XE26   A0A131XQR9   A0A131XRE4   A0A2B4RTL1   A0A131Y3E3   A0A131XT39   A0A0P4VTV9   A0A2H9T3F5   A0A1E1X2P5   A0A2G8KET5   A0A1G4M5I2   A0A147BQ97   A0A1G4M3N1   A0A147BNC9   A0A147BLD9   A0A2I0UC10   A0A147BB29   A0A147BJZ1   A0A1E1XGC7   A0A0K8RPQ6   A0A1E1X2R3   A0A2H9T4Q5   A0A1E1XVU2   A0A1E1XPS6   A0A147BBR8   A0A2H9T4Y5   A0A1E1XM20   W4ZGQ7   A0A147BMA3   A0A147BMF5   A0A1E1XN53   A0A2S6A1F0   A0A2H9T4F1   A0A147BPB7   A0A2H9T2R7   A0A2H9T5P0   K7F115   A0A2H9T2Z5   K7EZ61   A0A210QEX7   K7EXB4   A0A147BI04   K7EW64   A0A2H9T2V7   A0A131XV56   W4ZIH4   K7EYW0   K7F016   K7EWB0   A0A2B4RFN8   A0A147BKM4   K7EWE8   K7F0H6   A0A147BJE1   W4Z5Z2   A0A1E1WW75   K7F012   A0A147BK71   A0A147BRL4   A0A147BL51   K7F0V3   K7EY14   K7EX25   K7EY42   A0A147BKN8   K7EY70   A0A2I0UEM9   K7EZY9  

KEGG

105842661    no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964   GO:0004519   GO:0005634   GO:0016021   GO:0004040  

PANTHER

PTHR14927   PTHR11895  

Length:

329

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.71347

Exp number, first 60 AAs:

0.71344

Total prob of N-in:

0.04468

outside

1  -  329

 

 

Pi

37.071416

Theta

51.646961

Tajima's D

-1.706621

CLR

1.147623

CSRT

0.0343982800859957

Interpretation

Uncertain