Gene
KWMTBOMO02484
Pre Gene Modal
BGIBMGA002714
Annotation
PREDICTED:_syndecan_isoform_X2_[Bombyx_mori]
Full name
Syndecan
Location in the cell
Cytoplasmic Reliability : 1.065 Nuclear Reliability : 1.669
Sequence
CDS
ATGGGGAAAAGTAGAATTTTGCGGAACAGCGACATCTATCGAAAGAATAGTCACTTAAAATTGAAAGCTCTGAAATTTGCCAACACTGGAGGTGCGCTCTCTGACGACAAACTCACAAAGTTTTCCGCTAAAGCCTGCGCGTTCTGGCATCTGTCGGCGGCATTCGGGAACCCGCAGAGTATTCCTGAGCCTGTCGCTGAATCGCCGTCAATCAACTTATCGCTTCCACTGAACGACGGCGTCGCGTCAGACCAGAGCACGTTCGTCGACGCCGATGAAGGTTCCGGCCTAGAGACAGACGAGAGCTCGGGCTCCGGTTGGGGAGCCGGCCCCGGGCCCGACGACGAGGACAGCTCAGGTGAAGCGCCCACCGACCACGATGAACTACCACCAGACGACGAGGATTACACGACCTCGACCGACGCGGCTCCCACCGATGACCACGAGAGGAAACTCATTTCGGACTTCTACGACGAAACCGAAGTAGAAATAGAAAAAGAGTCCGAACAAACAGATACCCCGATCACCCCGGCCACCCCGGTCACTGAACCTCCGCCTCTAGAGCCCGAAATACACCCAGAAGTATTTGTTCCTGTGAACAAACCAAGCGGGGGTGAGGTGGAACCGCACGGCGCGGGGGAGGAGCGACCCTCGCGCCCTGATCAGAACGGCGAAATCAACATCTCTGAAGAAGACACCAATCCGGCAATTGACCAGGAGCAGGCGGGCACTAACGTGGATCCTGATTCGCGGCCGTCAGAAGTGTTCATCATGAACGCCAAGCCGGAAGACAGAGCGATCAGCTTCTTCGCGCAGCCTGGCATACTCGCCGCTGTGATCGGTGGTGCTGTAGTAGGGTTATTATGCGCAATCCTTGTGGTCATGTTCATAGTATACCGCATGCGTAAGAAGGATGAAGGTTCCTATGCCCTCGACGAGCCGAAGAGAAGTCCAGCGGCAGCCTCGTACGGGAAAGGACACAACAACCGCGAGTTCTACGCGTGA
Protein
MGKSRILRNSDIYRKNSHLKLKALKFANTGGALSDDKLTKFSAKACAFWHLSAAFGNPQSIPEPVAESPSINLSLPLNDGVASDQSTFVDADEGSGLETDESSGSGWGAGPGPDDEDSSGEAPTDHDELPPDDEDYTTSTDAAPTDDHERKLISDFYDETEVEIEKESEQTDTPITPATPVTEPPPLEPEIHPEVFVPVNKPSGGEVEPHGAGEERPSRPDQNGEINISEEDTNPAIDQEQAGTNVDPDSRPSEVFIMNAKPEDRAISFFAQPGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDEPKRSPAAASYGKGHNNREFYA
Summary
Description
Cell surface proteoglycan.
Similarity
Belongs to the syndecan proteoglycan family.
Uniprot
EMBL
Proteomes
PRIDE
Pfam
PF01034 Syndecan
Interpro
ProteinModelPortal
Ontologies
PANTHER
Topology
Subcellular location
Membrane
Length:
334
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
23.12109
Exp number, first 60 AAs:
0.00096
Total prob of N-in:
0.02029
outside
1 - 274
TMhelix
275 - 297
inside
298 - 334
Population Genetic Test Statistics
Pi
239.877595
Theta
185.722709
Tajima's D
0.78258
CLR
0
CSRT
0.5989200539973
Interpretation
Uncertain
