Silkworm Genome Informatics Database

Gene

KWMTBOMO02474

Annotation

PREDICTED:_gastrula_zinc_finger_protein_XlCGF28.1-like_[Papilio_machaon]

Location

Bomo_Chr5(-):2917841-2922822 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 3.571

CDS

ATGAATGAAATTTCAAAAGTGTGTCGTGCATGCCTAACAGTATGTGAGAACACCACTTACGAACTTTTTGAAAATGTGTCGGCCGATTTGTTTTACTATTGCACTTCGATTAAGCTATACAAAGATGAGAAATTGCCAAAAGTGATTTGCGAAATTTGCCACAAATTACTTGTACAATATTCTGAATTCAAAAATACTTGTATCACATCCCAAAATGCACTGCTTGGTTTGAAAAAATCTGTAAAAAATGAAAGTACTGAAGCAGATACAAGTTGGGATGATGACAATGACTATGGAAATCTCTACATTGACAAAAATGAAAAAGAGGAGAAGAGACACAATGATTATCAAAATTTTGTTGTAAAAGTTGAAAAATTGCATCCTGAATACAATGGGTTGCCGTTGCAAGATTTTAATGCTGAAACTATTGTAGAAGACATTAAGCCAAAGGAAAGAAAATTAAAGATACAGTTAAAACTACAAGGAAATAAAAGAAAAAAGAAAAATATTGTGAAACAGAAGAATCATTTCATATTTACATGTGATATTTGCAATAAAAAATTCAATTATTTAGATAGATTTCAAGCGCACAAATTGGAGCATGAAGGCAAAGTTACATCTATATTCTGTCAACCGTGCAACAAAACATTTGTGACGTGGAGCGGTCTACGTCGACACAAGGAGAACGAACACACACAAGTTAAGCTGGAAAGTTTGAAATGTAAGGTCTGCGGCAAGTTGAGTAAGAACAAACACACACTTAAGGTTCACGAGCGGATACACGGGGAGAGACCTTTACTGATGTGCGACGTTTGCGGAAAGGGATTCACGACCGCAGTCATTTTGAAAACACATTTAGAGACCCACAACGAGCACAGAGAGAGAAGGTTCACGTGCGAACAGTGCGGCCGGAAGTTCTTAACGCAGACCGTGCTCCACACGCACGTGGCCCGCCGCCACTCCGACCGCCGCTACATCTGCCACGTCTGCGACCAACCCTTCATCGACAAATACAACTTGGCCCAACATTTGATCAGGCACAACAGCGCCGACCGCAAGCGCAATTAA

Protein

MNEISKVCRACLTVCENTTYELFENVSADLFYYCTSIKLYKDEKLPKVICEICHKLLVQYSEFKNTCITSQNALLGLKKSVKNESTEADTSWDDDNDYGNLYIDKNEKEEKRHNDYQNFVVKVEKLHPEYNGLPLQDFNAETIVEDIKPKERKLKIQLKLQGNKRKKKNIVKQKNHFIFTCDICNKKFNYLDRFQAHKLEHEGKVTSIFCQPCNKTFVTWSGLRRHKENEHTQVKLESLKCKVCGKLSKNKHTLKVHERIHGERPLLMCDVCGKGFTTAVILKTHLETHNEHRERRFTCEQCGRKFLTQTVLHTHVARRHSDRRYICHVCDQPFIDKYNLAQHLIRHNSADRKRN

Uniprot

H9IZN2 A0A2H1WF88 A0A2A4IZ32 A0A194Q4H9 A0A194QVE2 A0A194Q5H0 + More
A0A194QV77 A0A2H1WF96 A0A2A4J0T1 A0A2J7PGM4 A0A0T6AZJ0 A0A067R1T9 A0A1W4WWE3 A0A1W4X3I9 D6X4Z7

Pubmed

19121390 26354079 24845553 18362917 19820115

EMBL

BABH01014532 ODYU01008294 SOQ51750.1 NWSH01004519 PCG65021.1 KQ459465 + More
KPJ00254.1 KQ461103 KPJ09437.1 KPJ00255.1 KPJ09438.1 SOQ51749.1 PCG65022.1 NEVH01025175 PNF15481.1 LJIG01016431 KRT80623.1 KK852775 KDR16795.1 KQ971381 EEZ97217.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240 UP000235965 UP000027135 + More
UP000192223 UP000007266

PRIDE

H9IZN2

Pfam

PF00096 zf-C2H2 + More
PF07776 zf-AD

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type
IPR012934   Znf_AD

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9IZN2 A0A2H1WF88 A0A2A4IZ32 A0A194Q4H9 A0A194QVE2 A0A194Q5H0 + More
A0A194QV77 A0A2H1WF96 A0A2A4J0T1 A0A2J7PGM4 A0A0T6AZJ0 A0A067R1T9 A0A1W4WWE3 A0A1W4X3I9 D6X4Z7

PDB

2I13 E-value=1.66317e-13, Score=184

KEGG

101744961 no KO assigned | (RefSeq) zinc finger protein 184-like

GO

GO:0003676 GO:0005634 GO:0008270 GO:0046872 GO:0005737 GO:0008152 GO:0016301 GO:0016773 GO:0006281 GO:0048384

Length:

355

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00262

Exp number, first 60 AAs:

0.00153

Total prob of N-in:

0.08663

outside

1 - 355

Pi

172.507679

Theta

169.768991

Tajima's D

0.62181

CLR

2.81715

CSRT

0.549822508874556

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics