Silkworm Genome Informatics Database

Gene

KWMTBOMO02471 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002719

Annotation

PREDICTED:_translation_initiation_factor_eIF-2B_subunit_delta_[Bombyx_mori]

Location

Bomo_Chr5(-):2884467-2896302 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.841 Nuclear Reliability : 1.941

CDS

ATGTCTTCTAATGAAATCCCACCAAAGTCTAGAGATGAAATTAAAGCTGCTCGACAGGCAAAAAAAGCTGCCAAACTAAAAGTAAACAACAAGACCACTGAAAATCCTCAACTGACAAAAGAAATAGAGAATCTTAATGAAAACAACATAAATTCTAAACCTAAAGTAGAAAGCACAGATGAAGTAGACAAATCTGTTGTAATAAATCCTAATGCTGTAGATATAAGTACTAGTAGAGAACAGATCAAAGCAGATAGAGCTGCCAAGAAATCTGCCAAACAGTTAAAGAAAAAAGGAGCTGCCGATGGTGAAAGTAATGTGCAAAGCTCTGTAAAAAAAGAACTTAAAGAAGATGATTCTGTGAAACAAAATGAAGATATGACTGTAAAAGATGTTGTTGAAACTTTAAAAAACATAGTTAGTGTTGCCAAGGAGGTTAATGAAATTACGACAAAAGTAAGTGCCTTGGATTTGGGAGGTAAAAAGCAAGAAGAGACAGGCAAGAGTAAAGCAGAACTTCGGGCTGAACGACGCGCCAAACAGGAGGCTCAGAGAGCTGCCAAACAAGCTGCCGAAAAAAAAGTAGTCAAGCCTAAACTTGAAGCTCCTACAGTAAATGTGGATGTTCCGAAGAAAGAGGAAAAAGTTATTAAATCAAAAACCTTGGAGAAGTCGAAAACAAAGTTGCAGCTCGCACAGCGCTTCAACTGGTTTCAGCATCTTTACACTGAGTTTGACAAGAATCCTTTGAAGAAGATACCCATTAATTCCAACCTACACCCCGCCATCGTGAAACTTGGAGTCCAGTTGTCGTCGCGAGTGGTGAAGGGATCGAACGCCAGATGCATCGCTCTGCTGGACGCCCTCAACAAAATGGTGAGGGACTACGTTCTGCCAGCGAAGACTGAGTTCTCCCGCGGCCTGGAGTCGCACCTGGCCTCCAGCCTGGAGTTCCTGTGGACGACGCGCGAGCCCTGCGCCTCGCAGATCAACGCCGTCAAGTTCTTCCGGCACCACCTCGCGCAGCTACCCAACAACGTCGACGAGTTCGATGCCAAAAAAACCCTTCAAGAAGAGATCGATCGCTACATCAGAGAACAGATCGAAATGGCGGGAGAAGCGATCAGCATCGCCGTTAGAAACAAGATCTCCAATGGCGACACTATACTCACTTATGGATGCTCGTCGCTGATCGAGCAGATACTGTGCGAGGCGTGGGAGGCGGGGCTGCAGTTCCGCACGCTGGTGGTGGGCTCGCGCGTGTCCCCCGACGCCGCGGAGATGCTGCGGCGGCTGTGCGCGCGCGGCCTGCCCTGCACCTACGTAGACTTCACCGCCGTCAACTATGTCATGAAGACCGTGAGCAAGGTGGTGCTGGGCGCGGGCGCGCTGCTGGCCAACGGCGCGGTGGTGAGCGCGGCGGGCACGGCGGGCGTGGCGCTGGCGGCGCGCGCTCGCAACCGCCCCGTGCTCGTCGCCTGCCACACGCACAAGTTCATCGACAGCCTCTACACCGACGCCTTCATGCACAACCAGATAGGAGACCCCGACGATCTTCTGGAAAAATCGGATGATAATTCACCACTAAAAGATTGGAGATCGAATTTAAACTTAACACCACTGAACCTGACTTATGACGTCACACCTCCGTGCCTCATCACCGCCGTCGTCACAGAACTTGCCATATTGCCTTGCACCAGCGCTCCCGTTGTACTCAGATTTAAACTCTCCGAATATGGTGTATAA

Protein

MSSNEIPPKSRDEIKAARQAKKAAKLKVNNKTTENPQLTKEIENLNENNINSKPKVESTDEVDKSVVINPNAVDISTSREQIKADRAAKKSAKQLKKKGAADGESNVQSSVKKELKEDDSVKQNEDMTVKDVVETLKNIVSVAKEVNEITTKVSALDLGGKKQEETGKSKAELRAERRAKQEAQRAAKQAAEKKVVKPKLEAPTVNVDVPKKEEKVIKSKTLEKSKTKLQLAQRFNWFQHLYTEFDKNPLKKIPINSNLHPAIVKLGVQLSSRVVKGSNARCIALLDALNKMVRDYVLPAKTEFSRGLESHLASSLEFLWTTREPCASQINAVKFFRHHLAQLPNNVDEFDAKKTLQEEIDRYIREQIEMAGEAISIAVRNKISNGDTILTYGCSSLIEQILCEAWEAGLQFRTLVVGSRVSPDAAEMLRRLCARGLPCTYVDFTAVNYVMKTVSKVVLGAGALLANGAVVSAAGTAGVALAARARNRPVLVACHTHKFIDSLYTDAFMHNQIGDPDDLLEKSDDNSPLKDWRSNLNLTPLNLTYDVTPPCLITAVVTELAILPCTSAPVVLRFKLSEYGV

Similarity

Belongs to the eIF-2B alpha/beta/delta subunits family.

Uniprot

H9IZN4 A0A2A4J0V0 A0A194QVU5 A0A194Q3Y7 A0A212ERH4

Pubmed

19121390 26354079 22118469

EMBL

BABH01014535 BABH01014536 NWSH01004519 PCG65003.1 KQ461103 KPJ09439.1 + More
KQ459465 KPJ00257.1 AGBW02013039 OWR44054.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000007151

PRIDE

H9IZN4

Pfam

PF01008   IF-2B        + More
PF08544   GHMP_kinases_C
PF00288   GHMP_kinases_N
PF10509   GalKase_gal_bdg

Interpro

IPR000649   IF-2B-related        + More
IPR037171   NagB/RpiA_transferase-like
IPR020568   Ribosomal_S5_D2-typ_fold
IPR000705   Galactokinase
IPR019539   GalKase_gal-bd
IPR019741   Galactokinase_CS
IPR014721   Ribosomal_S5_D2-typ_fold_subgr
IPR006204   GHMP_kinase_N_dom
IPR036554   GHMP_kinase_C_sf
IPR006203   GHMP_knse_ATP-bd_CS
IPR013750   GHMP_kinase_C_dom

SUPFAM

SSF100950   SSF100950        + More
SSF54211   SSF54211
SSF55060   SSF55060

Gene 3D

3.30.230.10

ProteinModelPortal

H9IZN4 A0A2A4J0V0 A0A194QVU5 A0A194Q3Y7 A0A212ERH4

PDB

6O9Z E-value=4.36681e-66, Score=640

KEGG

101745260 K03680 translation initiation factor eIF-2B subunit delta | (RefSeq) translation initiation factor e

PATHWAY

03013 RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0044237 GO:0004335 GO:0005524 GO:0006012 GO:0005534 GO:0003743 GO:0005783 GO:0006486 GO:0016021 GO:0031122 GO:0003924 GO:0005525 GO:0004518 GO:0006281 GO:0048384

Length:

581

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

13.85403

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01793

outside

1 - 581

Pi

296.200751

Theta

176.357639

Tajima's D

1.638425

CLR

0.534908

CSRT

0.816259187040648

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics