SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02461
Pre Gene Modal
BGIBMGA002566
Annotation
PREDICTED:_glycine-rich_cell_wall_structural_protein-like_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.173
 

Sequence

CDS
ATGAAACAGACGGTGCGGTCCTGTATCGTCCTTTGCCTTTTTGTAGGCTTAGGAAATGCATCAGTAAGAGTGCGTCGAGGCTATGGAGGTAGCGTTGGAGGGGGAGGGGGAGGAGGAGGAGGTGGTGGAGGAGGATTCGGTTTCGGAGGCGGTGGCGGTGGTGGATTCGGCTTCGGAGGCGGTAGCGGGGGCGCCTTCGGAGGAGGCCTCGATACGATCCGGGAAGGTGTTGGCAATATTATCGGAAAGGTTCACGCCGGTCTCTCCGGTTTGGGTGGCGGAGGCTTTGGCGCTGGAGGCGGCGGAGGTTTTGGCGCCGGAGGCGGCGGAGGTTTTGGCACTGGAGGCGGTGGAGGTCTTGGAGGTGGTAGTCACGGTGGATTTGGAGGATCTAATGAAAAAACGATCTACACGAAATCGAACGATGGAAAATCTGGTGGTTTCGCCTTCACCGGTACATTAGATGGCGGAAAAGGTGGTTACGGCGGTGGCGGTGGATACAGTAATGGCGGTAATGGAGGCGGCGGCTACGGTGGCGGCGCTGGGTTCGGTGCCGGAGGAGGCTTAGGTAGCGGTGGATCAGGAGAAGGTGCTGGCGGGCACAGCGGCAGTGGAAACGGAAAGTACAATGGGGCGAGTGGATCCGGAAATAACGGCTACGGAGGCAGCAGCGGCGGAGCATTCGGTGCGGGAGGTGGATTTGGAGGGGGTGCTGGCGGTGGCCTGGGCGGTGGTGGAGCAGCAGGGGGACTAAGCAGTGGCAGTGGAAAATACGGTGGCTCCGGAAGCGGTGGCTATGGAAGCAGTGGAAGTGGAGGATTTGGCGGAGGTGCAGGTTTTGGAGGGGGAGCCGGTGGTAGTAAACACAGCAGTGGCGGTCACAGTGGTGGAGGAGGCTTCGGTGCCAGTGGTGGATTTGGCGGAGGAGGAGGTGGAGGAGGTGGTGGTGGTTCTGGATCTCATGAAAATTCTGGAAGTGAAGAATATGGATCAAATGAAAATGAATTTCACGTAAAAGGCGACGGTAATGGCGGCAGTAGTGGTGGAGGGCTGGGAGGTGGTGCGGGCGGTGGATTTGGAGGTGGAAGTGGCCACGGCGGCAGTATTAGTGGTGGTTATGGTAGTCACGGTGGAAATAAAGGAACCGGCAACGTTGGTTATGGCGGTGGCGCTGGAGGGGGCTATGGCGGTGGCACTGGAGGGGGTTTAGGCGGCGGTACCGATGGCAGCTTTGGGTTGGGCCTCACAGCTGGATTTTCTGGGATCGGCGCCGGAAAAGGAGGTGGATTTGGTAGCGGTGGAGGAGGACTGGGCGCCGGAGCAGGTACGAGCCACAGCGGTGGATTCGGCGGATCACTTGGCTTTGGTGGTGGACACGGTGGTTATGGCGGAAGTGGAGGAAGTAGCCATAGTGGTTCCGGTGGATATGGCGGAAGTGGAGGAAGTGGCCACAGTGGATCCGGTGGATATGGCGGAAGTGGTCACGGTGGTTCAGGTGGTGGCTGTACTTCCGGTTGCGGTGGCAGCGGTGGTTACGAAAGCCATAGTAATGCCTTTGCCTCTGCTAGTGCTAAAGCTTCAGCCTCTGCTAGTGTCGGAAGCTATGGCAAATGA
Protein
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

Summary

Uniprot
ProteinModelPortal

Ontologies

GO

Topology

SignalP
Position:   1 - 20,         Likelihood:  0.958721
 
 
Length:
537
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
55.2947200000001
Exp number, first 60 AAs:
30.99237
Total prob of N-in:
0.91639
POSSIBLE N-term signal
sequence
inside
1  -  6
TMhelix
7  -  24
outside
25  -  43
TMhelix
44  -  66
inside
67  -  86
TMhelix
87  -  109
outside
110  -  537
 
 

Population Genetic Test Statistics

Pi
149.304895
Theta
122.062181
Tajima's D
0.601997
CLR
0.048014
CSRT
0.550472476376181
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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