Gene

KWMTBOMO02453

Pre Gene Modal

BGIBMGA002730

Annotation

PREDICTED:_epidermal_retinal_dehydrogenase_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr5(-):2541184-2543430      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.051

CDS

ATGTTACTACGACTCTATTCATTTTGCATTTTGATGGTGGATGTTGCTTGGGTTGTGTTCAATGCAATATGCGCAACATTTCAAGCTGCATATGAATTGTTCAGACCGCCACCATTGAAAACTGTCAGATTGGAAACTGCTATGGTCATTGGCTCCGGAAGAGGTGTTGGACGACAAATAGCTATGCAACTTGCAGATCTAGGGGCAATAGTACTGTGTATTGACATCAATCATCAGAATAATGAAGATACTGTGGACCACATCAAACTTAGAGGTGGATCAGCAGCCAGTTACATTTGTGATGTTACAAGAAGAGAGAAAATAGAAGAATTAGCAGCACAAATTAAGAAAGATGTTGGTTTTGTCAGCATGTTGTTCTATTGCTGTGGTATACCCAGCCCTAGGTCTTTAATGACACAACCACCTCAAGATATACACAAAACATTGGATTTGACATTGACATCATATTTCTGGCTCATAGACAACTTCTTACCAGAAATGAAAACCAGAGACCACGGGCACATTGTGGCTTTGACTTCTGTAGCTGGTCTCAGCTACATAAAAGATAAGATGCCGCTCAGTGTTGCTCAGTTTGCAGTGCAGGGGTTAGCGGAGTCGCTGATGGAGGATCTCAGAATAAATAAGATTGATAATGTGCATGTGACATTGATTCACATATATCCTTTCATCGTGAATGATGAGTATCACGATGTGAAATTAAGGATACCCAGCTATTTCGGGACTATATCACCTGTAGAAGCAGCATCATCGATCCTGGACAGCGTCAGGAGGAACTACCCGGAAGCATCAGTTCCAAAACATTTGTTATGTCTTGGTCATTTGTTACGTATTCTACCGCGCCGAGCAACAGTACTAATAAGGGACTTACTCGACACAGGTGTTGATTTTGCTTGA

Protein

MLLRLYSFCILMVDVAWVVFNAICATFQAAYELFRPPPLKTVRLETAMVIGSGRGVGRQIAMQLADLGAIVLCIDINHQNNEDTVDHIKLRGGSAASYICDVTRREKIEELAAQIKKDVGFVSMLFYCCGIPSPRSLMTQPPQDIHKTLDLTLTSYFWLIDNFLPEMKTRDHGHIVALTSVAGLSYIKDKMPLSVAQFAVQGLAESLMEDLRINKIDNVHVTLIHIYPFIVNDEYHDVKLRIPSYFGTISPVEAASSILDSVRRNYPEASVPKHLLCLGHLLRILPRRATVLIRDLLDTGVDFA

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

Q1HQ03   H9IZP5   A0A2W1BNJ1   A0A2A4IUS6   A0A2H1WW30   A0A194Q412   + More
A0A212F2P0   S4PU03   A0A0L7L1Z5   A0A1Q3G5G9   A0A1Q3G5G5   A0A336K307   A0A2J7QD11   A0A0L7QVI3   F4W5L9   A0A087ZW96   A0A154P4Y5   A0A195ES88   A0A067QRK2   A0A158NSD5   A0A151JQG8   B0XHQ8   A0A0J7KMJ8   A0A2A3EMZ6   A0A023EMZ5   A0A1Q3FCP9   A0A182G8F2   A0A151WLN3   Q176M2   K7IU33   A0A182IMS1   A0A2M4AY87   A0A2P8YVI5   W5J961   A0A182LVD2   A0A084VAM0   A0A2M4AY85   A0A310SCI8   A0A026X000   U5EWJ5   E2AVV7   A0A182SCV0   A0A3L8D4F6   A0A182P9A1   A0A182YHJ7   A0A1S4GF86   Q7QC74   A0A2C9GRF4   A0A182N526   A0A151I2E0   A0A1J1I3C7   A0A182QLF7   A0A182R3V2   A0A182XHZ4   A0A182VG36   A0A182LF18   A0A182UEN5   A0A182VWP4   A0A182FKW1   A0A2M4AYX8   A0A182K4D0   A0A146MDQ4   B4Q0N3   A0A0K8T673   A0A146KSE4   A0A0A9XL74   B4IKW1   B3MRJ7   B4L823   A0A0N7Z933   B3NY14   K7IU30   A0A212EHJ0   B0WZ23   A0A1J1J5V5   A0A1Q3FQL1   T1IBK9   A0A224XGH6   Q9W3K9   Q8SWZ9   Q7PRW2   A0A0V0G980   A0A2C9GPE1   A0A1W4VXC3   A0A0M5J2W9   B4NEJ5   W5JLV1   A0A1L8DKW9   A0A182TE30   S4PKB0   A0A182L878   A0A182YH69   A0A182PSU8   A0A182UQG1   A0A182XBY7   A0A084VNW2   A0A182MHI6   A0A182W5M3   A0A023F371   A0A182RHK9  

Pubmed

19121390    28756777    26354079    22118469    23622113    26227816    + More
21719571    24845553    21347285    24945155    26483478    17510324    20075255    29403074    20920257    23761445    24438588    24508170    20798317    30249741    25244985    12364791    20966253    26823975    17994087    17550304    25401762    27129103    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    14747013    17210077    25474469   

EMBL

DQ443249    ABF51338.1    BABH01014571    KZ149951    PZC76632.1    NWSH01006033    + More
PCG63727.1    ODYU01011494    SOQ57258.1    KQ459465    KPJ00282.1    AGBW02010715    OWR47992.1    GAIX01011138    JAA81422.1    JTDY01003501    KOB69455.1    GEYN01000195    JAV44794.1    GEYN01000198    JAV44791.1    UFQS01000011    UFQT01000011    SSW97153.1    SSX17539.1    NEVH01015832    PNF26469.1    KQ414727    KOC62511.1    GL887655    EGI70516.1    KQ434819    KZC06947.1    KQ981993    KYN31036.1    KK853021    KDR12385.1    ADTU01024835    KQ978642    KYN29484.1    DS233191    EDS28565.1    LBMM01005480    KMQ91479.1    KZ288215    PBC32519.1    JXUM01007904    GAPW01002856    KQ560249    JAC10742.1    KXJ83576.1    GFDL01009777    JAV25268.1    JXUM01007910    KXJ83577.1    KQ982956    KYQ48799.1    CH477385    EAT42125.1    EAT42126.1    AAZX01009366    AAZX01016310    GGFK01012419    MBW45740.1    PYGN01000337    PSN48256.1    ADMH02002026    ETN59918.1    AXCM01007361    ATLV01004131    KE524190    KFB35014.1    GGFK01012420    MBW45741.1    KQ769068    OAD52993.1    KK107061    EZA61336.1    GANO01002927    JAB56944.1    GL443213    EFN62379.1    QOIP01000014    RLU15116.1    AAAB01008859    EAA08199.4    APCN01000376    KQ976543    KYM80964.1    CVRI01000039    CRK94699.1    AXCN02000175    GGFK01012670    MBW45991.1    GDHC01001477    JAQ17152.1    CM000162    EDX02304.1    GBRD01004802    GBRD01004801    JAG61019.1    GDHC01020487    JAP98141.1    GBHO01023203    JAG20401.1    CH480859    EDW52732.1    CH902622    EDV34402.1    CH933814    EDW05598.2    GDKW01001667    JAI54928.1    CH954180    EDV47535.1    AAZX01011807    AGBW02014879    OWR40948.1    DS232203    EDS37337.1    CVRI01000073    CRL07775.1    GFDL01005134    JAV29911.1    ACPB03013753    GFTR01004841    JAW11585.1    AE014298    BT044131    AAF46316.1    ACH92196.1    AY094928    AAM11281.1    AAAB01008846    EAA06477.6    GECL01001744    JAP04380.1    APCN01001259    CP012528    ALC48624.1    CH964239    EDW82164.2    ADMH02001200    ETN63754.1    GFDF01007094    JAV06990.1    GAIX01004600    JAA87960.1    ATLV01014931    KE524996    KFB39656.1    AXCM01002712    GBBI01003106    JAC15606.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000037510    UP000235965    + More
UP000053825    UP000007755    UP000005203    UP000076502    UP000078541    UP000027135    UP000005205    UP000078492    UP000002320    UP000036403    UP000242457    UP000069940    UP000249989    UP000075809    UP000008820    UP000002358    UP000075880    UP000245037    UP000000673    UP000075883    UP000030765    UP000053097    UP000000311    UP000075901    UP000279307    UP000075885    UP000076408    UP000007062    UP000075840    UP000075884    UP000078540    UP000183832    UP000075886    UP000075900    UP000076407    UP000075903    UP000075882    UP000075902    UP000075920    UP000069272    UP000075881    UP000002282    UP000001292    UP000007801    UP000009192    UP000008711    UP000015103    UP000000803    UP000192221    UP000092553    UP000007798   

PRIDE

Q1HQ03    H9IZP5    Q9W3K9    Q8SWZ9   

Pfam

PF00106   adh_short        + More
PF00294   PfkB

Interpro

IPR002347   SDR_fam        + More
IPR036291   NAD(P)-bd_dom_sf       
IPR029056   Ribokinase-like       
IPR011611   PfkB_dom       
IPR034093   KHK       
IPR020904   Sc_DH/Rdtase_CS       

SUPFAM

SSF51735   SSF51735        + More
SSF53613   SSF53613       

Gene 3D

3.40.1190.20    

CDD

cd01939  Ketohexokinase

ProteinModelPortal

Q1HQ03   H9IZP5   A0A2W1BNJ1   A0A2A4IUS6   A0A2H1WW30   A0A194Q412   + More
A0A212F2P0   S4PU03   A0A0L7L1Z5   A0A1Q3G5G9   A0A1Q3G5G5   A0A336K307   A0A2J7QD11   A0A0L7QVI3   F4W5L9   A0A087ZW96   A0A154P4Y5   A0A195ES88   A0A067QRK2   A0A158NSD5   A0A151JQG8   B0XHQ8   A0A0J7KMJ8   A0A2A3EMZ6   A0A023EMZ5   A0A1Q3FCP9   A0A182G8F2   A0A151WLN3   Q176M2   K7IU33   A0A182IMS1   A0A2M4AY87   A0A2P8YVI5   W5J961   A0A182LVD2   A0A084VAM0   A0A2M4AY85   A0A310SCI8   A0A026X000   U5EWJ5   E2AVV7   A0A182SCV0   A0A3L8D4F6   A0A182P9A1   A0A182YHJ7   A0A1S4GF86   Q7QC74   A0A2C9GRF4   A0A182N526   A0A151I2E0   A0A1J1I3C7   A0A182QLF7   A0A182R3V2   A0A182XHZ4   A0A182VG36   A0A182LF18   A0A182UEN5   A0A182VWP4   A0A182FKW1   A0A2M4AYX8   A0A182K4D0   A0A146MDQ4   B4Q0N3   A0A0K8T673   A0A146KSE4   A0A0A9XL74   B4IKW1   B3MRJ7   B4L823   A0A0N7Z933   B3NY14   K7IU30   A0A212EHJ0   B0WZ23   A0A1J1J5V5   A0A1Q3FQL1   T1IBK9   A0A224XGH6   Q9W3K9   Q8SWZ9   Q7PRW2   A0A0V0G980   A0A2C9GPE1   A0A1W4VXC3   A0A0M5J2W9   B4NEJ5   W5JLV1   A0A1L8DKW9   A0A182TE30   S4PKB0   A0A182L878   A0A182YH69   A0A182PSU8   A0A182UQG1   A0A182XBY7   A0A084VNW2   A0A182MHI6   A0A182W5M3   A0A023F371   A0A182RHK9  

PDB

1YB1     E-value=4.07133e-22,     Score=257

KEGG

733110    no KO assigned | (RefSeq) epidermal retinal dehydrogenase

GO

GO:0016021   GO:0005811   GO:0004454   GO:0006000   GO:0016491   GO:0005783   GO:0004745  

Length:

304

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

20.4272099999999

Exp number, first 60 AAs:

20.3826

Total prob of N-in:

0.88010

POSSIBLE N-term signal

sequence

inside

1  -  6

TMhelix

7  -  29

outside

30  -  304

 

 

Pi

211.431169

Theta

193.011212

Tajima's D

0.238224

CLR

0.340932

CSRT

0.437578121093945

Interpretation

Uncertain