Gene

KWMTBOMO02452

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr5(+):2401372-2404466      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon BS      

Alternative Name

Reverse transcriptase

Location in the cell

Nuclear   Reliability : 2.188

CDS

ATGGTCAGGAACGACAGGCTCTCTGCTCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCATCCCACTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGCATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATTAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGCATCAGCCTAGCTGAATCTGATCCACCATCGCTACCGTTTAGCCCGGACTCTACCCCGTCTTCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCACGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTGCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCTGATGTGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTATAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTATTCAACATGGGTGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTTAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCCAGTAGAAACAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTCTTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGTATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGTCAATCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATTTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACGCACATAGACACCCTTCAATCTCTACAATCCCGCTTTTGCAGGTTAGCCGTCGGAGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCTATACAGAAATACATGAAGTCAGCGTCGGAACGGTACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTAGCCGCCACTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTCGCACTAGACGCCTTCAGCTCTAGGAGCAGGCTTAGGGACCTCGGTAACCGTACTCGCCGAACTCGACAAAGAGTTCGCCGTGCAACCTAA

Protein

MVRNDRLSARGGGTVIYYRRALHCIPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRVRFRPPSRRYEARSRSRFRSRHEDCGGLAHAGISLAESDPPSLPFSPDSTPSSQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLTAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDVLPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFSQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMKSASERYFDKAMRHDNRLIVAATDYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSRSRLRDLGNRTRRTRQRVRRAT

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon BS

Uniprot

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
V5GNJ2   V5GNF3   A0A139WA11   A0A2S2PR14   A0A2S2Q352   A0A2S2QEE0   A0A023EYS8   A0A2H8U0H5   A0A224XF24   J9KCZ4   A0A2J7R7D0   A0A1Y1LKN6   A0A2S2PX53   X1WNI2   A0A2J7RS81   A0A2S2NGV8   A0A023F6S4   A0A2S2RAN7   A0A224XB44   A0A2J7PQB5   A0A023EZE6   A0A0C9RJA4   J9LC21   A0A2J7Q627   A0A2J7R8R8   A0A2M4BD67   A0A069DZC5   X1WZH0   A0A2M4BDV6   A0A069DW01   A0A2J7PDM0   X1WN18   A0A1L8DIZ6   J9M522   K7IN67   A0A2S2Q383   X1WTA1   A0A2S2R9D4   A0A224X6U5   Q95SX7   A0A1Y1KFR3   A0A2J7QTW2   A0A224XI99   A0A2S2PBB4   A0A2A4K918   A0A224X6Q4   J9KPF1   A0A224XIB0   A0A0A9YJ00   A0A023F7D1   A0A0J7MYU2  

EC Number

2.7.7.49

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
25474469    26334808    20075255    7753626    12537569    25401762   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GALX01005299    JAB63167.1    GALX01005359    JAB63107.1    KQ971729    KYB24751.1    GGMR01019198    MBY31817.1    GGMS01002955    MBY72158.1    GGMS01006359    MBY75562.1    GBBI01004395    JAC14317.1    GFXV01007093    MBW18898.1    GFTR01008038    JAW08388.1    ABLF02008463    NEVH01006736    PNF36716.1    GEZM01053022    JAV74219.1    GGMS01000737    MBY69940.1    ABLF02008153    ABLF02008462    ABLF02008464    NEVH01000269    PNF43694.1    GGMR01003407    MBY16026.1    GBBI01001646    JAC17066.1    GGMS01017914    MBY87117.1    GFTR01008262    JAW08164.1    NEVH01022639    PNF18527.1    GBBI01004571    JAC14141.1    GBYB01008290    JAG78057.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01017542    PNF24034.1    NEVH01006721    PNF37225.1    GGFJ01001858    MBW50999.1    GBGD01000880    JAC88009.1    ABLF02034467    GGFJ01001857    MBW50998.1    GBGD01000799    JAC88090.1    NEVH01026386    PNF14434.1    ABLF02021177    ABLF02027367    ABLF02066338    GFDF01007661    JAV06423.1    ABLF02024246    GGMS01002992    MBY72195.1    ABLF02037660    GGMS01017365    MBY86568.1    GFTR01008251    JAW08175.1    AY060438    AAL25477.1    GEZM01084969    JAV60363.1    NEVH01011193    PNF32021.1    GFTR01008256    JAW08170.1    GGMR01014053    MBY26672.1    NWSH01000032    PCG80496.1    GFTR01008279    JAW08147.1    ABLF02041767    GFTR01008246    JAW08180.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GBBI01001570    JAC17142.1    LBMM01013518    KMQ85605.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000235965    UP000002358    UP000218220    + More
UP000036403   

PRIDE

Q93137    Q9XXW0    Q9BPQ0    Q95SX7   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
V5GNJ2   V5GNF3   A0A139WA11   A0A2S2PR14   A0A2S2Q352   A0A2S2QEE0   A0A023EYS8   A0A2H8U0H5   A0A224XF24   J9KCZ4   A0A2J7R7D0   A0A1Y1LKN6   A0A2S2PX53   X1WNI2   A0A2J7RS81   A0A2S2NGV8   A0A023F6S4   A0A2S2RAN7   A0A224XB44   A0A2J7PQB5   A0A023EZE6   A0A0C9RJA4   J9LC21   A0A2J7Q627   A0A2J7R8R8   A0A2M4BD67   A0A069DZC5   X1WZH0   A0A2M4BDV6   A0A069DW01   A0A2J7PDM0   X1WN18   A0A1L8DIZ6   J9M522   K7IN67   A0A2S2Q383   X1WTA1   A0A2S2R9D4   A0A224X6U5   Q95SX7   A0A1Y1KFR3   A0A2J7QTW2   A0A224XI99   A0A2S2PBB4   A0A2A4K918   A0A224X6Q4   J9KPF1   A0A224XIB0   A0A0A9YJ00   A0A023F7D1   A0A0J7MYU2  

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0006313  

Length:

833

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.65582000000001

Exp number, first 60 AAs:

0.05869

Total prob of N-in:

0.06905

outside

1  -  833

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.693315

CSRT

0

Interpretation

Uncertain